WebProtégé: A collaborative Web-based platform for editing biomedical ontologies

Bioinformatics

Volumn 30, Issue 16, 2014, Pages 2384-2385

  Horridge, Matthew ^a   Tudorache, Tania ^a   Nuylas, Csongor ^a   Vendetti, Jennifer ^a   Noy, Natalya F ^a   Musen, Mark A ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL ONTOLOGY; COMPUTER PROGRAM; COOPERATION; INTERNET;

BIOLOGICAL ONTOLOGIES; COOPERATIVE BEHAVIOR; INTERNET; SOFTWARE;

EID: 84906213269     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu256     Document Type: Article

References (11)

1. Day-Richter, J. et al. (2007) OBO-Edit-an ontology editor for biologists. Bioinformatics, 23, 2198-2200.
2. Gonçalves, R.S. et al. (2012) Ecco: a hybrid diff tool for OWL 2 ontologies. In: Klinov, P. and Horridge, M. (eds) Proceedings of OWL: Experiences and Directions Workshop 2012. Vol. 849, CEUR Workshop Proceedings. http://ceur-ws.org.
3. Horridge, M. et al. (2006) Supporting early adoption of OWL 1.1 with Protégé- OWL and FaCT++. In: Cuenca Grau, B. et al. (ed.) OWL: Experiences and Directions (OWLED). Vol. 216, CEUR Workshop Proceedings.
4. Horridge, M. and Bechhofer, S. (2011) The OWL API: a Java API for OWL ontologies. Semant. Web, 2, 11-21.
5. Larson, S.D. and Martone, M.E. (2013) NeuroLex.org: an online framework for neuroscience knowledge. Front. Neuroinform., 7, 18.
6. Malone, J. et al. (2010) Modelling sample variables with and experimental factor ontology. Bioinformatics, 26, 1112-1118.
7. Motik, B. et al. (2009) OWL 2 Web Ontology Language Structural Specification and Functional Style Syntax. W3C Recommendation, W3C-World Wide Web Consortium. http://www.w3.org/TR/owl2-syntax/ (May 2014, date last accessed).
8. Mungall, C.J. et al. (2011) Obo flat file format 1.4 syntax and semantics [draft]. Technical report, Lawrence Berkeley National Laboratory.
9. Noy, N.F. et al. (2009) BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res., 37, W170-W173.
10. Smith, B. et al. (2007) The OBO Foundary: coordinated evolution of ontology to support biomedical data integration. Nat. Biotechnol., 25, 1251-1255.
11. Xiang, Z. et al. (2011) Ontobee: a linked data server and browser for ontology terms. In: Smith, B. et al. (ed.) ICBO International Conference on Biomedical Ontology, Buffalo, New York, USA. http://icbo.buffalo.edu/ICBO-2011- Proceedings.pdf.