Digital holographic microscopy and focusing methods based on image sharpness

Journal of Microscopy

Volumn 255, Issue 3, 2014, Pages 138-149

  Ilhan, Hazar A ^a   Doǧar, Mert ^a   Ozcan, Meriç ^a  

^a SABANCI UNIVERSITY   (Turkey)

Author keywords

Autofocusing; Digital holographic microscopy; Hologram reconstruction; Hologram scaling; Sharpness metrics

Indexed keywords

ELECTRON HOLOGRAPHY; LITHOGRAPHY; MICROSCOPIC EXAMINATION; PHASE MEASUREMENT;

AUTO-FOCUSING; COMPUTATIONAL POWER; DIGITAL HOLOGRAPHIC MICROSCOPY; HIGH RESOLUTION; HOLOGRAM RECONSTRUCTION; HOLOGRAM SCALING; IMAGE SHARPNESS; PHASE OBJECT; SCALINGS; SHARPNESS METRICS;

HOLOGRAMS;

ARTICLE; CHEEK MUCOSA; DIGITAL HOLOGRAPHIC MICROSCOPY; EPITHELIUM CELL; FOURIER TRANSFORMATION; HISTOGRAM; HUMAN; IMAGE PROCESSING; IMAGE QUALITY; IMAGE SHARPNESS; IMAGING AND DISPLAY; MATHEMATICAL ANALYSIS; MICROSCOPE; MICROSCOPY; PRIORITY JOURNAL; SCALE UP; SIMULATION; STATISTICAL ANALYSIS; COMPUTER ASSISTED DIAGNOSIS; EQUIPMENT DESIGN; HOLOGRAPHY; IMAGE ENHANCEMENT; PROCEDURES;

EQUIPMENT DESIGN; HOLOGRAPHY; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICROSCOPY;

EID: 84906100850     PISSN: 00222720     EISSN: 13652818     Source Type: Journal    
DOI: 10.1111/jmi.12144     Document Type: Article

References (25)

1. Ahrenberg, L., Page, A.J., Hennelly, B.M., McDonald, J.B. & Naughton, T.J. (2009) Using commodity graphics hardware for real-time digital hologram view-reconstruction. J. Disp. Technol. 5, 111-119.
2. Brenner, J.F., Dew, B.S., Horton, J.B., King, T., Neurath, P.W. & Selles, W.D. (1976) An automated microscope for cytologic research a preliminary evaluation. J. Histochem. Cytochem. 24(1), 100-111.
3. Doǧar, M., İlhan, H.A. & Özcan, M. (2013) Real-time, auto-focusing digital holographic microscope using graphics processors. Rev. Sci. Instrum. 84, 083704-083704-7.
4. Dubois, F., Schockaert, C., Callens, N. & Yourassowsky, C. (2006) Focus plane detection criteria in digital holography microscopy by amplitude analysis. Opt. Express, 14, 5895-5908.
5. Emery, Y., Cuche, E., Colomb, T., Depeursinge, C., Rappaz, B., Marquet, P. & Magistretti, P. (2007) DHM (Digital Holography Microscope) for imaging cells. J. Phys. Conf. Ser. 61, 1317-1321.
6. Firestone, L., Cook, K., Culp, K., Talsania, N. & Preston, K. (1991) Comparison of autofocus methods for automated microscopy. Cytometry, 12, 195-206.
7. Gillespie, J. & King, R.A. (1989) The use of self-entropy as a focus measure in digital holography. Pattern Recogn. Lett. 9, 19-25.
8. Goodman, J.W. (1996) Introduction to Fourier Optics. 2nd edn. McGraw-Hill Companies, Inc., New York.
9. Groen, F.C.A., Young, I.T. & Ligthart, G. (1985) A comparison of different focus functions for use in autofocus algorithms. Cytometry, 6, 81-91.
10. İlhan, H.A., Doǧar, M. & Özcan, M. (2013a) Fast autofocusing in digital holography using scaled holograms. Opt. Commun. 287, 81-84.
11. İlhan, H.A., Doǧar, M. & Özcan, M. (2013b) Autofocusing in digital holography. Proc. SPIE 8644, 86440C-11.
12. Langehanenberg, P., Kemper, B., Dirksen, D. & von Bally, G. (2008) Autofocusing in digital holographic phase contrast microscopy on pure phase objects for live cell imaging. Appl. Opt. 47(19), D176-D182.
13. Li, W., Loomis, N.C., Hu, Q. & Davis, C.S. (2007) Focus detection from in-line holograms based on spectral l1 norms. J. Opt. Soc. Am. 24, 3054-3062.
14. Liebling, M. & Unser, M. (2004) Autofocus for digital fresnel holograms by use of a fresnelet-sparsity criterion. J. Opt. Soc. Am. 21, 2424-2430.
15. Mallat, S. (2009) A Wavelet Tour of Signal Processing. 3rd edn. Elsevier Inc., Burlington, Massachusetts.
16. Memmolo, P., Distante, C., Paturzo, M., Finizio, A., Ferraro, P. & Javidi, B. (2011) Automatic focusing in digital holography and its application to stretched holograms. Opt. Lett. 36, 1945-1947.
17. Muller, R.A. & Buffington, A. (1974) Real-time correction of atmospherically degraded telescope images through image sharpening. J. Opt. Soc. Am. 64, 1200-1210.
18. Özcan, M. & Bayraktar, M. (2009) Digital holography image reconstruction methods. Proc. SPIE 7233, 72330B-10.
19. Schnars, U. & Jüptner, W.P.O. (2002) Digital recording and numerical reconstruction of holograms. Meas. Sci. Technol. 13, R85-R101.
20. Shimobaba, T., Sato, Y., Miura, J., Takenouchi, M. & Ito, T. (2008) Real-time digital holographic microscopy using the graphic processing unit. Opt. Express, 16, 11776-11781.
21. Sun, Y., Duthaler, S. & Nelson, B.J. (2004) Autofocusing in computer microscopy: selecting the optimal focus algorithm. Microsc. Res. Techniq. 65, 139-149.
22. Takaki, Y., Kawai, H. & Ohzu, H. (1999) Hybrid holographic microscopy free of conjugate and zero-order images. Appl. Opt. 38, 4990-4996.
23. Vollath, D. (1987) Automatic focusing by correlative methods. J. Microsc. 147, 279-288.
24. Yang, G. & Nelson, B.J. (2003) Wavelet-based auto-focusing and unsupervised segmentation of microscopic images. Proc. IEEE/RSJ International Conference on Intelligent Robots and Systems, 3, 2143-2148.
25. Yeo, T.T.E., Ong, S.H., Jayasooriah & Sinniah, R. (1993) Autofocusing for tissue microscopy. Image Vision Comput. 11, 629-639.