Simiduia litorea sp. nov., isolated from seashore sediments of the Sea of Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 8, 2014, Pages 2688-2692

  Tanaka, Naoto ^a   Romanenko, Lyudmila A ^b   Svetashev, Vassilii I ^c   Mikhailov, Valery V ^b  

^a TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^b PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^c INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; RNA 16S; UBIQUINONE; UBIQUINONE Q 8; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEASHORE; SEDIMENT; SEQUENCE ANALYSIS; SIMIDUIA LITOREA; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; UBIQUINONE;

EID: 84906070202     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.061846-0     Document Type: Article

References (20)

1. Collins, M. D. & Shah, H. N. (1984). Fatty acid, menaquinone and polar lipid composition ofRothia dentosacariosa. Arch Microbiol 137, 247-249.
2. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
3. Folch, J., Lees, M. & Sloane Stanley, G. H. (1957). A simple method for the isolation and purification of total lipids from animal tissues. J Biol Chem 226, 497-509.
4. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
5. Kim, B. C., Poo, H., Lee, K. H., Kim, M. N., Park, D. S., Oh, H. W., Lee, J. M. & Shin, K. S. (2012). Simiduia areninigraesp. nov., an agarolytic bacterium isolated from sea sand. Int J Syst Evol Microbiol 62, 906-911.
6. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
7. Mitchell, K. & Fallon, R. J. (1990). The determination of ubiquinone profiles by reversed-phase high-performance thin-layer chromatography as an aid to the speciation ofLegionellaceae. J Gen Microbiol 136, 2035-2041.
8. Owen, R. J., Hill, L. R. & Lapage, S. P. (1969). Determination of DNA base compositions from melting profiles in dilute buffers. Biopolymers 7, 503-516.
9. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
10. Romanenko, L. A., Schumann, P., Rohde, M., Mikhailov, V. V. & Stackebrandt, E. (2004). Reinekea marinisedimentorumgen. nov., sp. nov., a novel gammaproteobacterium from marine coastal sediments. Int J Syst Evol Microbiol 54, 669-673.
11. Romanenko, L. A., Tanaka, N., Svetashev, V. I., Kurilenko, V. V. & Mikhailov, V. V. (2013a). Luteimonas vadosasp. nov., isolated from seashore sediment. Int J Syst Evol Microbiol 63, 1261-1266.
12. Romanenko, L. A., Tanaka, N. & Svetashev, V. I. (2013b). Devosia submarina sp. nov., isolated from deep-sea surface sediments. Int J Syst Evol Microbiol 63, 3079-3085.
13. Sasser, M. (1990). Microbial identification by gas chromatographic analysis of fatty acid methyl esters (GC-FAME). Technical Note 101. Newark, DE: MIDI.
14. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genusPaenibacillus. Int J Syst Bacteriol 47, 289-298.
15. Shieh, W. Y., Liu, T. Y., Lin, S. Y., Jean, W. D. & Chen, J. S. (2008). Simiduia agarivorans gen. nov., sp. nov., a marine, agarolytic bacterium isolated from shallow coastal water from Keelung, Taiwan. Int J Syst Evol Microbiol 58, 895-900.
16. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
18. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
19. Thompson, J. D., Gibson, T. J. & Higgins, D. G. (2002). Multiple sequence alignment using CLUSTALW andCLUSTALX. In Current Protocols in Bioinformatics, 2. 3. 1-2. 3. 22. Edited by A. D. Baxevanis L. D. Stein, G. D. Stormo & J. R. Yates III. Hoboken, NJ: Wiley.
20. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.