Flavihumibacter solisilvae sp. nov., isolated from forest soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 8, 2014, Pages 2897-2901

  Lee, Hyo Jung ^a   Jeong, Sang Eun ^a   Cho, Myong Suk ^b   Kim, SeonHee ^b   Lee, Sang Suk ^c   Lee, Byoung Hee ^d   Jeon, Che Ok ^a  

^a Chung Ang University   (South Korea)

^b Sungkyunkwan University   (South Korea)

^c Sunchon National University   (South Korea)

^d National Institute of Biological Resources   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACTERIAL DNA; CARBENICILLIN; CATALASE; FATTY ACID; GENOMIC DNA; GENTAMICIN; ISOPRENOID; KANAMYCIN; LINCOMYCIN; LIPID; MENAQUINONE; NEOMYCIN; OLEANDOMYCIN; OXIDOREDUCTASE; PHOSPHATIDYLETHANOLAMINE; QUINONE DERIVATIVE; RNA 16S; TETRACYCLINE;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BOOTSTRAPPING; CELL MOTILITY; CHEMOTAXONOMY; COLONY FORMATION; DNA CONTENT; DNA DNA HYBRIDIZATION; FLAVIHUMIBACTER PETASEUS; FLAVIHUMIBACTER SOLISILVAE; FOREST SOIL; GENE SEQUENCE; GENETIC SIMILARITY; GRAM POSITIVE BACTERIUM; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; TEMPERATURE; VIET NAM;

BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHATIDYLETHANOLAMINES; PHYLOGENY; PIGMENTATION; POLYENES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TREES; VIETNAM; VITAMIN K 2;

EID: 84906060500     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.063669-0     Document Type: Article

References (24)

1. Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceaeand emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
2. Bowman, J. P. (2000). Description ofCellulophaga algicolasp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa(ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosacomb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
3. Felsenstein, J. (2002). PHYLIP(phylogeny inference package), version 3. 6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
4. Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
5. Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773.
6. Jeong, S. H., Park, M. S., Jin, H. M., Lee, K., Park, W. & Jeon, C. O. (2013). Aestuariibaculum suncheonensegen. nov., sp. nov., a marine bacterium of the familyFlavobacteriaceaeisolated from a tidal flat and emended descriptions of the generaGaetbulibacterandTamlana. Int J Syst Evol Microbiol 63, 332-338.
7. Jin, H. M., Kim, J. M., Lee, H. J., Madsen, E. L. & Jeon, C. O. (2012). Alteromonasas a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. Environ Sci Technol 46, 7731-7740.
8. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
9. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
10. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
12. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
13. Lee, S. H., Park, M. S., Jung, J. Y. & Jeon, C. O. (2012). Leuconostoc miyukkimchiisp. nov., isolated from brown algae (Undaria pinnatifida) kimchi. Int J Syst Evol Microbiol 62, 1098-1103.
14. Lee, H. J., Lee, S. H., Lee, S. S., Lee, J. S., Kim, Y., Kim, S. C. & Jeon, C. O. (2014). Ramlibacter solisilvaesp. nov., isolated from forest soil, and emended description of the genusRamlibacter. Int J Syst Evol Microbiol 64, 1317-1322.
15. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
16. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification ofNocardiaand related bacteria. Int J Syst Bacteriol 27, 104-117.
17. Rosselló-Mora, R. & Amann, R. (2001). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39-67.
18. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
19. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
20. Stamatakis, A., Ott, M. & Ludwig, T. (2005). RAxML-OMP: an efficient program for phylogenetic inference on SMPs. In Parallel Computing Technologies, vol. 3506, pp. 288-302. Edited by V. Malyshkin. Lecture Notes in Computer Science. Berlin: Springer.
21. Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73, 5261-5267.
22. Yurkov, V., Stackebrandt, E., Holmes, A., Fuerst, J. A., Hugenholtz, P., Golecki, J., Gad'on, N., Gorlenko, V. M., Kompantseva, E. I. & Drews, G. (1994). Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosumgen. nov., sp. nov., andErythrobacter litoralissp. nov. Int J Syst Bacteriol 44, 427-434.
23. Zhang, N. N., Qu, J. H., Yuan, H. L., Sun, Y. M. & Yang, J. S. (2010). Flavihumibacter petaseusgen. nov., sp. nov., isolated from soil of a subtropical rainforest. Int J Syst Evol Microbiol 60, 1609-1612.
24. Zhang, L., Wang, Y., Wei, L., Wang, Y., Shen, X. & Li, S. (2013). Taibaiella smilacinaegen. nov., sp. nov., an endophytic member of the familyChitinophagaceaeisolated from the stem of Smilacina japonica, and emended description ofFlavihumibacter petaseus. Int J Syst Evol Microbiol 63, 3769-3776.