메뉴 건너뛰기




Volumn 21, Issue 4, 2014, Pages 380-386

A quantitative real time PCR based method for the detection of Phytophthora infestans causing late blight of potato, in infested soil

Author keywords

Detection; ITS; Oospores; P. infestans; PCR

Indexed keywords


EID: 84905989771     PISSN: 1319562X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.sjbs.2013.09.012     Document Type: Article
Times cited : (27)

References (49)
  • 1
    • 0032453731 scopus 로고    scopus 로고
    • Indications of soil borne inoculum of Phytophthora infestans
    • Andersson B., SandstroÈm M., StroÈmberg A. Indications of soil borne inoculum of Phytophthora infestans. Potato Res. 1998, 41:305-310.
    • (1998) Potato Res. , vol.41 , pp. 305-310
    • Andersson, B.1    SandstroÈm, M.2    StroÈmberg, A.3
  • 2
    • 0029189609 scopus 로고
    • Biology, ecology, and epidemiology of the potato late blight pathogen Phytophthora infestans in soil
    • Andrivon D. Biology, ecology, and epidemiology of the potato late blight pathogen Phytophthora infestans in soil. Phytopathology 1995, 85:1053-1056.
    • (1995) Phytopathology , vol.85 , pp. 1053-1056
    • Andrivon, D.1
  • 3
    • 0035026519 scopus 로고    scopus 로고
    • The application of real time PCR to the identification detection, and quantification of Pyrenophora species in barley seed
    • Bates J.A., Taylor E.J.A., Kenyon D.M., Thomas J.E. The application of real time PCR to the identification detection, and quantification of Pyrenophora species in barley seed. Mol. Plant Pathol. 2001, 2:49-57.
    • (2001) Mol. Plant Pathol. , vol.2 , pp. 49-57
    • Bates, J.A.1    Taylor, E.J.A.2    Kenyon, D.M.3    Thomas, J.E.4
  • 4
    • 0344034410 scopus 로고
    • Potato cull piles as a source of late blight infection
    • Bonde R., Schultz E.S. Potato cull piles as a source of late blight infection. Am. Potato J. 1943, 20:112-118.
    • (1943) Am. Potato J. , vol.20 , pp. 112-118
    • Bonde, R.1    Schultz, E.S.2
  • 5
    • 0038637278 scopus 로고    scopus 로고
    • Identification of Phytophthora species on the basis of restriction enzyme fragment analysis of the internal transcribed spacer regions of ribosomal RNA
    • Cooke D.E.L., Duncan J.M., Williams N.A., Hagenaar-de Weerdt M., Bonants P.J.M. Identification of Phytophthora species on the basis of restriction enzyme fragment analysis of the internal transcribed spacer regions of ribosomal RNA. Bull. OEPP 2000, 30:519-523.
    • (2000) Bull. OEPP , vol.30 , pp. 519-523
    • Cooke, D.E.L.1    Duncan, J.M.2    Williams, N.A.3    Hagenaar-de Weerdt, M.4    Bonants, P.J.M.5
  • 6
    • 47349107142 scopus 로고    scopus 로고
    • The effects of enhanced methionine synthesis on amino acid and anthocyanin content of potato tubers
    • Dancs G., Kondrak M., Banfalvi Z. The effects of enhanced methionine synthesis on amino acid and anthocyanin content of potato tubers. BMC Plant Biol. 2008, 8:65.
    • (2008) BMC Plant Biol. , vol.8 , pp. 65
    • Dancs, G.1    Kondrak, M.2    Banfalvi, Z.3
  • 7
    • 0005958280 scopus 로고
    • The influence of host resistance and climate on the initial appearance of foliar late blight of potato from infected seed tubers
    • Doster M.A., Sweigard J.A., Fry W.E. The influence of host resistance and climate on the initial appearance of foliar late blight of potato from infected seed tubers. Am. Potato J. 1986, 66:226-233.
    • (1986) Am. Potato J. , vol.66 , pp. 226-233
    • Doster, M.A.1    Sweigard, J.A.2    Fry, W.E.3
  • 8
    • 0000495602 scopus 로고
    • Sporulation of Phytophthora infestans (Mont.) de Bary on the surface of diseased potatoes and tuber-to-tuber spread of infection during handling
    • Dowley L.J., O'Sullivan E.O. Sporulation of Phytophthora infestans (Mont.) de Bary on the surface of diseased potatoes and tuber-to-tuber spread of infection during handling. Potato Res. 1991, 34:295-296.
    • (1991) Potato Res. , vol.34 , pp. 295-296
    • Dowley, L.J.1    O'Sullivan, E.O.2
  • 9
    • 0029103743 scopus 로고
    • Formation and survival of oospores of Phytophthora infestans under natural conditions
    • Drenth A., Janssen E.M., Govers F. Formation and survival of oospores of Phytophthora infestans under natural conditions. Plant. Pathol. 1995, 44:86-94.
    • (1995) Plant. Pathol. , vol.44 , pp. 86-94
    • Drenth, A.1    Janssen, E.M.2    Govers, F.3
  • 10
    • 0001110101 scopus 로고
    • Bacterial and fungal activities in soil: separation of bacteria by a rapid centrifugation technique
    • Faegri A., Torsvik V.L., Goksoyr J. Bacterial and fungal activities in soil: separation of bacteria by a rapid centrifugation technique. Soil Biol. Biochem. 1977, 9:105-112.
    • (1977) Soil Biol. Biochem. , vol.9 , pp. 105-112
    • Faegri, A.1    Torsvik, V.L.2    Goksoyr, J.3
  • 11
    • 0344211422 scopus 로고    scopus 로고
    • Direct quantification of fungal DNA from soil substrate using real time PCR
    • Filion M., St-Arnaud M., Jabaji-Hare S.H. Direct quantification of fungal DNA from soil substrate using real time PCR. J. Microbiol. Methods 2003, 53:67-76.
    • (2003) J. Microbiol. Methods , vol.53 , pp. 67-76
    • Filion, M.1    St-Arnaud, M.2    Jabaji-Hare, S.H.3
  • 13
    • 0000320986 scopus 로고
    • Factors affecting oospore germination of Phytophthora megasperma f. sp. medicaginis
    • Forster H., Ribeiro O.K., Erwin D.C. Factors affecting oospore germination of Phytophthora megasperma f. sp. medicaginis. Phytopathology 1983, 73:442-448.
    • (1983) Phytopathology , vol.73 , pp. 442-448
    • Forster, H.1    Ribeiro, O.K.2    Erwin, D.C.3
  • 15
    • 70349253925 scopus 로고    scopus 로고
    • Applied biotechnology to combat late blight in potato caused by Phytophthora infestans
    • Haverkort A.J., Struik P.C., Visser R.G.F., Jacobsen E. Applied biotechnology to combat late blight in potato caused by Phytophthora infestans. Potato Res. 2009, 52:249-264.
    • (2009) Potato Res. , vol.52 , pp. 249-264
    • Haverkort, A.J.1    Struik, P.C.2    Visser, R.G.F.3    Jacobsen, E.4
  • 16
    • 33747055048 scopus 로고    scopus 로고
    • TaqMan chemistry for Phytophthora ramorum detection and quantification with a comparison of diagnostic methods
    • Hayden K., Ivors K., Wilkinson C., Garbelotto M. TaqMan chemistry for Phytophthora ramorum detection and quantification with a comparison of diagnostic methods. Phytopathology 2006, 96:846-854.
    • (2006) Phytopathology , vol.96 , pp. 846-854
    • Hayden, K.1    Ivors, K.2    Wilkinson, C.3    Garbelotto, M.4
  • 17
    • 0023866522 scopus 로고
    • DNA probe method for the detection of specific microorganisms in the soil bacterial community
    • Holben W.E., Jansson J.K., Chelm B.K., Tiedje J.M. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 1983, 54:703-711.
    • (1983) Appl. Environ. Microbiol. , vol.54 , pp. 703-711
    • Holben, W.E.1    Jansson, J.K.2    Chelm, B.K.3    Tiedje, J.M.4
  • 18
    • 20444383214 scopus 로고    scopus 로고
    • Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil
    • Hussain S., Lees A.K., Duncan J.M., Cooke D.E.L. Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil. Plant. Pathol. 2005, 54:373-382.
    • (2005) Plant. Pathol. , vol.54 , pp. 373-382
    • Hussain, S.1    Lees, A.K.2    Duncan, J.M.3    Cooke, D.E.L.4
  • 19
    • 70249108524 scopus 로고    scopus 로고
    • Latent infection of potato seed tubers by Phytophthora infestans during long-term cold storage
    • Johnson D.A., Cummings T.F. Latent infection of potato seed tubers by Phytophthora infestans during long-term cold storage. Plant Dis. 2009, 93:940-946.
    • (2009) Plant Dis. , vol.93 , pp. 940-946
    • Johnson, D.A.1    Cummings, T.F.2
  • 20
    • 0033772617 scopus 로고    scopus 로고
    • Enhanced polymerase chain reaction methods for detecting and quantifying Phytophthora infestans in plants
    • Judelson H.S., Tooley P.W. Enhanced polymerase chain reaction methods for detecting and quantifying Phytophthora infestans in plants. Phytopathology 2000, 90:1112-1119.
    • (2000) Phytopathology , vol.90 , pp. 1112-1119
    • Judelson, H.S.1    Tooley, P.W.2
  • 22
    • 34248390885 scopus 로고    scopus 로고
    • Quantification of Cylindrocarpon destructans f. sp. panacis in soils by real-time PCR
    • Kernaghan G., Hoke S.M., Reeleder R. Quantification of Cylindrocarpon destructans f. sp. panacis in soils by real-time PCR. Plant. Pathol. 2007, 56:508-516.
    • (2007) Plant. Pathol. , vol.56 , pp. 508-516
    • Kernaghan, G.1    Hoke, S.M.2    Reeleder, R.3
  • 23
    • 84891344563 scopus 로고    scopus 로고
    • Impact of different US genotypes of Phytophthora infestans on potato seed tuber rot and plant emergence in a range of cultivars and advanced breeding lines
    • Kirk W.W., Samen F.Abu el, Wharton P., Douches D., Tumbalam P., Thill C., Thompson A. Impact of different US genotypes of Phytophthora infestans on potato seed tuber rot and plant emergence in a range of cultivars and advanced breeding lines. Potato Res. 2009, 51:121-140.
    • (2009) Potato Res. , vol.51 , pp. 121-140
    • Kirk, W.W.1    Samen, F.A.E.2    Wharton, P.3    Douches, D.4    Tumbalam, P.5    Thill, C.6    Thompson, A.7
  • 24
    • 0041666538 scopus 로고    scopus 로고
    • Single strand-conformation polymorphism of ribosomal DNA for rapid species differentiation in genus Phytophthora
    • Kong P., Hong C., Richardson P.A., Gallegly M.E. Single strand-conformation polymorphism of ribosomal DNA for rapid species differentiation in genus Phytophthora. Fungal Genet. Biol. 2003, 39:238-249.
    • (2003) Fungal Genet. Biol. , vol.39 , pp. 238-249
    • Kong, P.1    Hong, C.2    Richardson, P.A.3    Gallegly, M.E.4
  • 26
    • 0031048915 scopus 로고    scopus 로고
    • Differences in tuber rot development for North American clones of Phytophthora infestans
    • Lambert D.H., Currier A.I. Differences in tuber rot development for North American clones of Phytophthora infestans. Am. Potato J. 1997, 74:39-43.
    • (1997) Am. Potato J. , vol.74 , pp. 39-43
    • Lambert, D.H.1    Currier, A.I.2
  • 27
    • 0027291689 scopus 로고
    • Allelic discrimination by nick-translation PCR with fluorogenic probes
    • Lee L.G., Connell C.R., Bloch W. Allelic discrimination by nick-translation PCR with fluorogenic probes. Nucleic Acids Res. 1993, 21:3761-3766.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3761-3766
    • Lee, L.G.1    Connell, C.R.2    Bloch, W.3
  • 28
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • Livak K.J., Flood S.J., Marmaro J., Giusti W., Deetz K. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods Appl. 1995, 4:357-362.
    • (1995) PCR Methods Appl. , vol.4 , pp. 357-362
    • Livak, K.J.1    Flood, S.J.2    Marmaro, J.3    Giusti, W.4    Deetz, K.5
  • 29
    • 78649515317 scopus 로고
    • The development of blight in potatoes subsequent to digging
    • Murphy P., McKay R. The development of blight in potatoes subsequent to digging. J. Dep. Lds. Agric., Dublin 1924, 24:103-116.
    • (1924) J. Dep. Lds. Agric., Dublin , vol.24 , pp. 103-116
    • Murphy, P.1    McKay, R.2
  • 30
    • 0008611303 scopus 로고
    • Further experiments on the sources and development of blight infection in potato tubers
    • Murphy P., McKay R. Further experiments on the sources and development of blight infection in potato tubers. J. Dep. Lds. Agric., Dublin 1925, 25:10-21.
    • (1925) J. Dep. Lds. Agric., Dublin , vol.25 , pp. 10-21
    • Murphy, P.1    McKay, R.2
  • 32
    • 0031958679 scopus 로고    scopus 로고
    • Influence of relative humidity and temperature on development of Didymella rabiei on chickpea debris
    • Navas-Cort́es J.A., Trapero-Casas A., Jiḿenez-D́iaz R.M. Influence of relative humidity and temperature on development of Didymella rabiei on chickpea debris. Plant. Pathol. 1998, 47:57-66.
    • (1998) Plant. Pathol. , vol.47 , pp. 57-66
    • Navas-Cort́es, J.A.1    Trapero-Casas, A.2    Jiḿenez-D́iaz, R.M.3
  • 33
    • 33645054639 scopus 로고
    • Potential use of PCR-amplified ribosomal intergenic sequences in the detection and differentiation of Verticillium wilt pathogens
    • Nazar R.N., Hu X., Schmidt J., Culham D., Robb E.J. Potential use of PCR-amplified ribosomal intergenic sequences in the detection and differentiation of Verticillium wilt pathogens. Physiol. Mol. Plant Pathol. 1991, 39:1-11.
    • (1991) Physiol. Mol. Plant Pathol. , vol.39 , pp. 1-11
    • Nazar, R.N.1    Hu, X.2    Schmidt, J.3    Culham, D.4    Robb, E.J.5
  • 34
    • 29644443436 scopus 로고    scopus 로고
    • Real-time polymerase chain reaction: applications to studies on soilborne pathogens
    • Okubara P.A., Schroeder K.L., Paulitz T.C. Real-time polymerase chain reaction: applications to studies on soilborne pathogens. Can. J. Plant Pathol. 2005, 27:300-313.
    • (2005) Can. J. Plant Pathol. , vol.27 , pp. 300-313
    • Okubara, P.A.1    Schroeder, K.L.2    Paulitz, T.C.3
  • 35
    • 77955871444 scopus 로고    scopus 로고
    • Recent developments in managing tuber blight of potato (Solanum tuberosum) caused by Phytophthora infestans
    • Olanya M.O., Ojiambo P.S., Nyankanga R.O., Honeycutt C.W., Kirk W.W. Recent developments in managing tuber blight of potato (Solanum tuberosum) caused by Phytophthora infestans. Can. J. Plant Pathol. 2009, 31:280-289.
    • (2009) Can. J. Plant Pathol. , vol.31 , pp. 280-289
    • Olanya, M.O.1    Ojiambo, P.S.2    Nyankanga, R.O.3    Honeycutt, C.W.4    Kirk, W.W.5
  • 36
    • 76749108117 scopus 로고    scopus 로고
    • Armed and dangerous
    • Pennisi E. Armed and dangerous. Science 2010, 327:804-805.
    • (2010) Science , vol.327 , pp. 804-805
    • Pennisi, E.1
  • 37
    • 0028130968 scopus 로고
    • Viability germination and infection potential of oospores of Phytophthora infestans
    • Pittis J.E., Shattock R.C. Viability germination and infection potential of oospores of Phytophthora infestans. Plant. Pathol. 1994, 43:387-396.
    • (1994) Plant. Pathol. , vol.43 , pp. 387-396
    • Pittis, J.E.1    Shattock, R.C.2
  • 38
    • 0003129292 scopus 로고
    • PCR assays for the detection and quantification of Verticillium species in potato
    • CAB International, The Netherlands, M. Dewey, R. Oliver, A. Schots (Eds.)
    • Robb J., Hu X., Platt H., Nazar R.N. PCR assays for the detection and quantification of Verticillium species in potato. Modern Detection Assays for Plant Pathogenic Fungi 1994, 83-90. CAB International, The Netherlands. M. Dewey, R. Oliver, A. Schots (Eds.).
    • (1994) Modern Detection Assays for Plant Pathogenic Fungi , pp. 83-90
    • Robb, J.1    Hu, X.2    Platt, H.3    Nazar, R.N.4
  • 39
    • 0036759015 scopus 로고    scopus 로고
    • Real-time PCR and its application for rapid plant disease diagnostics
    • Schaad N.W., Frederick R.D. Real-time PCR and its application for rapid plant disease diagnostics. Can. J. Plant Pathol. 2002, 24:250-258.
    • (2002) Can. J. Plant Pathol. , vol.24 , pp. 250-258
    • Schaad, N.W.1    Frederick, R.D.2
  • 40
    • 8744263850 scopus 로고    scopus 로고
    • Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi
    • Schena L., Nigro F., Ippolito A., Gallitelli D. Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi. Eur. J. Plant Pathol. 2004, 110:893-908.
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 893-908
    • Schena, L.1    Nigro, F.2    Ippolito, A.3    Gallitelli, D.4
  • 41
    • 33744734019 scopus 로고    scopus 로고
    • Identification and quantification of pathogenic Pythium spp. from soils in eastern Washington using real-time polymerase chain reaction
    • Schroeder K.L., Okubara P.A., Tambong J.T., Lévesque C.A., Paulitz T.C. Identification and quantification of pathogenic Pythium spp. from soils in eastern Washington using real-time polymerase chain reaction. Phytopathology 2006, 96:637-647.
    • (2006) Phytopathology , vol.96 , pp. 637-647
    • Schroeder, K.L.1    Okubara, P.A.2    Tambong, J.T.3    Lévesque, C.A.4    Paulitz, T.C.5
  • 42
    • 84855329579 scopus 로고    scopus 로고
    • Technical Bulletin Central Potato Research Institute, Shimla-171-001, Himachal Pradesh, India
    • Singh B.P., Chakrabarti S.K., Rana R.K. Vision 2030 2011, Technical Bulletin Central Potato Research Institute, Shimla-171-001, Himachal Pradesh, India.
    • (2011) Vision 2030
    • Singh, B.P.1    Chakrabarti, S.K.2    Rana, R.K.3
  • 43
    • 78649506643 scopus 로고    scopus 로고
    • Management of foliar disease, early blight, late blight and white mold
    • APS Press, St. Paul, MN, USA, D.A. Johnson (Ed.)
    • Stevenson W.R., Kirk W.W., Atallah Z.K. Management of foliar disease, early blight, late blight and white mold. Potato Health Management 2007, 209-222. APS Press, St. Paul, MN, USA. D.A. Johnson (Ed.).
    • (2007) Potato Health Management , pp. 209-222
    • Stevenson, W.R.1    Kirk, W.W.2    Atallah, Z.K.3
  • 44
    • 0000676252 scopus 로고
    • Evaluation of tetrazolium bromide as a vital stain for fungal oospores
    • Sutherland E.D., Cohen S.D. Evaluation of tetrazolium bromide as a vital stain for fungal oospores. Phytopathology 1983, 173:1532-1535.
    • (1983) Phytopathology , vol.173 , pp. 1532-1535
    • Sutherland, E.D.1    Cohen, S.D.2
  • 45
    • 0030804086 scopus 로고    scopus 로고
    • Rapid detection of Phytophthora infestans in late blight-infected potato and tomato using PCR
    • Trout C.L., Ristaino J.B., Madritch M., Wangsomboondee T. Rapid detection of Phytophthora infestans in late blight-infected potato and tomato using PCR. Plant Dis. 1997, 89:1042-1048.
    • (1997) Plant Dis. , vol.89 , pp. 1042-1048
    • Trout, C.L.1    Ristaino, J.B.2    Madritch, M.3    Wangsomboondee, T.4
  • 46
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai Y.L., Olson B.H. Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol. 1991, 57(4):1070-1074.
    • (1991) Appl. Environ. Microbiol. , vol.57 , Issue.4 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 47
    • 0028842856 scopus 로고
    • Direct DNA extraction for PCR-mediated assays of soil organisms
    • Volossiouk T., Robb E.J., Nazar R.N. Direct DNA extraction for PCR-mediated assays of soil organisms. Appl. Environ. Microbiol. 1995, 61:3972-3976.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3972-3976
    • Volossiouk, T.1    Robb, E.J.2    Nazar, R.N.3
  • 48
    • 0002265772 scopus 로고
    • Population dynamics and survival of Phytophthora
    • American Phytopathological Society, St. Paul, MN, D.C. Erwin, S. Bartnickin Gracia, P.H.T. Sao (Eds.)
    • Weste G. Population dynamics and survival of Phytophthora. Phytophthora: Its Biology, Taxanomy, Ecology and Pathology 1983, 237-257. American Phytopathological Society, St. Paul, MN. D.C. Erwin, S. Bartnickin Gracia, P.H.T. Sao (Eds.).
    • (1983) Phytophthora: Its Biology, Taxanomy, Ecology and Pathology , pp. 237-257
    • Weste, G.1
  • 49
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Academic Press, New York, M.A. Innis, D.H. Gelf, T.J. Sninsky, T.J. White (Eds.)
    • White T.J., Bruns T., Lee S., Tyalor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press, New York. M.A. Innis, D.H. Gelf, T.J. Sninsky, T.J. White (Eds.).
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Tyalor, J.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.