메뉴 건너뛰기




Volumn 5, Issue AUG, 2014, Pages

Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria

Author keywords

16S rrna gene; Anammox bacteria; Biogeography; Brocadia; Co occurrence; Planctomycetes; Scalindua

Indexed keywords


EID: 84905653262     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00399     Document Type: Article
Times cited : (169)

References (110)
  • 2
    • 25144475996 scopus 로고    scopus 로고
    • Marine microorganisms and global nutrient cycles
    • doi: 10.1038/nature04159
    • Arrigo, K. R. (2005). Marine microorganisms and global nutrient cycles. Nature 437, 349-355. doi: 10.1038/nature04159
    • (2005) Nature , vol.437 , pp. 349-355
    • Arrigo, K.R.1
  • 3
    • 76349125984 scopus 로고    scopus 로고
    • Global ecological patterns in uncultured Archaea
    • doi: 10.1038/ismej.2009.109
    • Auguet, J. C., Barberan, A., and Casamayor, E. O. (2010). Global ecological patterns in uncultured Archaea. ISME J. 4, 182-190. doi: 10.1038/ismej.2009.109
    • (2010) ISME J , vol.4 , pp. 182-190
    • Auguet, J.C.1    Barberan, A.2    Casamayor, E.O.3
  • 4
    • 84899628475 scopus 로고    scopus 로고
    • Organic matter stoichiometry, flux, and oxygen control nitrogen loss in the ocean
    • doi: 10.1126/science.1248364
    • Babbin, A. R., Keil, R. G., Devol, A. H., and Ward, B. B. (2014). Organic matter stoichiometry, flux, and oxygen control nitrogen loss in the ocean. Science 344, 406-408. doi: 10.1126/science.1248364
    • (2014) Science , vol.344 , pp. 406-408
    • Babbin, A.R.1    Keil, R.G.2    Devol, A.H.3    Ward, B.B.4
  • 5
    • 84855949949 scopus 로고    scopus 로고
    • Using network analysis to explore co-occurrence patterns in soil microbial communities
    • doi: 10.1038/ismej.2011.119
    • Barberán, A., Bates, S. T., Casamayor, E. O., and Fierer, N. (2012). Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J. 6, 343-351. doi: 10.1038/ismej.2011.119
    • (2012) ISME J , vol.6 , pp. 343-351
    • Barberán, A.1    Bates, S.T.2    Casamayor, E.O.3    Fierer, N.4
  • 7
    • 84874550637 scopus 로고    scopus 로고
    • Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat
    • doi: 10.3389/fmicb.2012.00252
    • Biller, S. J., Mosier, A. C., Wells, G. F., and Francis, C. A. (2012). Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat. Front. Microbiol. 3:252. doi: 10.3389/fmicb.2012.00252
    • (2012) Front. Microbiol. , vol.3 , pp. 252
    • Biller, S.J.1    Mosier, A.C.2    Wells, G.F.3    Francis, C.A.4
  • 8
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • doi: 10.1073/pnas.75.10.4801
    • Brosius, J., Palmer, M. L., Kennedy, P. J., and Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 75, 4801-4805. doi: 10.1073/pnas.75.10.4801
    • (1978) Proc. Natl. Acad. Sci. U.S.A. , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.L.2    Kennedy, P.J.3    Noller, H.F.4
  • 9
    • 58049087972 scopus 로고    scopus 로고
    • Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents
    • doi: 10.1038/ismej.2008.72
    • Byrne, N., Strous, M., Crépeau, V., Kartal, B., Birrien, J. L., Schmid, M., et al. (2009). Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents. ISME J. 3, 117-123. doi: 10.1038/ismej.2008.72
    • (2009) ISME J , vol.3 , pp. 117-123
    • Byrne, N.1    Strous, M.2    Crépeau, V.3    Kartal, B.4    Birrien, J.L.5    Schmid, M.6
  • 10
  • 11
    • 0035984122 scopus 로고    scopus 로고
    • Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern
    • doi: 10.1046/j.1462-2920.2002.00297.x
    • Casamayor, E. O., Massana, R., Benlloch, S., Øvreås, L., Díez, B., Goddard, V. J., et al. (2002). Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ. Microbiol. 4, 338-348. doi: 10.1046/j.1462-2920.2002.00297.x
    • (2002) Environ. Microbiol. , vol.4 , pp. 338-348
    • Casamayor, E.O.1    Massana, R.2    Benlloch, S.3    Øvreås, L.4    Díez, B.5    Goddard, V.J.6
  • 12
    • 84905670707 scopus 로고    scopus 로고
    • The first report of a microdiverse anammox bacteria community in waters of Colombian pacific, a transition area between prominent oxygen minimum zones of the eastern tropical pacific
    • doi: 10.1111/1758-2229.12165. [Epub ahead of print]
    • Castro-González, M., Molina, V., Rodríguez-Rubio, E., and Ulloa, O. (2014). The first report of a microdiverse anammox bacteria community in waters of Colombian pacific, a transition area between prominent oxygen minimum zones of the eastern tropical pacific. Environ. Microbiol. Rep. doi: 10.1111/1758-2229.12165. [Epub ahead of print].
    • (2014) Environ. Microbiol. Rep
    • Castro-González, M.1    Molina, V.2    Rodríguez-Rubio, E.3    Ulloa, O.4
  • 13
    • 1642376424 scopus 로고    scopus 로고
    • Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time
    • doi: 10.1128/AEM.70.3.1494-1505.2004
    • Crump, B. C., Hopkinson, C. S., Sogin, M. L., and Hobbie, J. E. (2004). Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl. Environ. Microbiol. 70, 1494-1505. doi: 10.1128/AEM.70.3.1494-1505.2004
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1494-1505
    • Crump, B.C.1    Hopkinson, C.S.2    Sogin, M.L.3    Hobbie, J.E.4
  • 14
    • 65349094528 scopus 로고    scopus 로고
    • Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary
    • doi: 10.1111/j.1462-2920.2008.01850.x
    • Dale, O. R., Tobias, C. R., and Song, B. (2009). Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary. Environ. Microbiol. 11, 1194-1207. doi: 10.1111/j.1462-2920.2008.01850.x
    • (2009) Environ. Microbiol. , vol.11 , pp. 1194-1207
    • Dale, O.R.1    Tobias, C.R.2    Song, B.3
  • 15
    • 84864972038 scopus 로고    scopus 로고
    • Anammox and dentrification in the oxygen minimum zone of the eastern South Pacific
    • doi: 10.4319/lo.2012.57.5.1331
    • Dalsgaard, T., Thamdrup, B., Farías, L., and Revsbech, N. P. (2012). Anammox and dentrification in the oxygen minimum zone of the eastern South Pacific. Limnol. Oceanogr. 57, 1331-1346. doi: 10.4319/lo.2012.57.5.1331
    • (2012) Limnol. Oceanogr. , vol.57 , pp. 1331-1346
    • Dalsgaard, T.1    Thamdrup, B.2    Farías, L.3    Revsbech, N.P.4
  • 16
    • 78149442933 scopus 로고    scopus 로고
    • Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China
    • doi: 10.1128/AEM.01264-10
    • Dang, H., Chen, R., Wang, L., Guo, L., Chen, P., Tang, Z., et al. (2010). Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China. Appl. Environ. Microbiol. 76, 7036-7047. doi: 10.1128/AEM.01264-10
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 7036-7047
    • Dang, H.1    Chen, R.2    Wang, L.3    Guo, L.4    Chen, P.5    Tang, Z.6
  • 17
    • 84875986302 scopus 로고    scopus 로고
    • Molecular detection of Candidatus Scalindua pacifica and environmental responses of sediment anammox bacterial community in the Bohai Sea, China
    • doi: 10.1371/journal.pone.0061330
    • Dang, H., Zhou, H., Zhang, Z., Yu, Z., Hua, E., Liu, X., et al. (2013). Molecular detection of Candidatus Scalindua pacifica and environmental responses of sediment anammox bacterial community in the Bohai Sea, China. PLoS ONE 8:e61330. doi: 10.1371/journal.pone.0061330
    • (2013) PLoS ONE , vol.8
    • Dang, H.1    Zhou, H.2    Zhang, Z.3    Yu, Z.4    Hua, E.5    Liu, X.6
  • 18
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • doi: 10.1128/AEM.03006-05
    • DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072. doi: 10.1128/AEM.03006-05
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3    Rojas, M.4    Brodie, E.L.5    Keller, K.6
  • 19
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • doi: 10.1093/nar/gkh340
    • Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. doi: 10.1093/nar/gkh340
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 20
    • 0035084619 scopus 로고    scopus 로고
    • Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate
    • doi: 10.1007/s002030100255
    • Egli, K., Fanger, U., Alvarez, P. J. J., Siegrist, H., van der Meer, J. R., and Zehnder, A. J. B. (2001). Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate. Arch. Microbiol. 175, 198-207. doi: 10.1007/s002030100255
    • (2001) Arch. Microbiol. , vol.175 , pp. 198-207
    • Egli, K.1    Fanger, U.2    Alvarez, P.J.J.3    Siegrist, H.4    van der Meer, J.R.5    Zehnder, A.J.B.6
  • 21
    • 34248178641 scopus 로고    scopus 로고
    • New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation
    • doi: 10.1038/ismej.2007.8
    • Francis, C. A., Beman, J. M., and Kuypers, M. M. M. (2007). New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. ISME J. 1, 19-27. doi: 10.1038/ismej.2007.8
    • (2007) ISME J , vol.1 , pp. 19-27
    • Francis, C.A.1    Beman, J.M.2    Kuypers, M.M.M.3
  • 22
    • 6344257178 scopus 로고    scopus 로고
    • Diversity of ammonia monooxygenase (amoA) genes across environmental gradients in Chesapeake Bay sediments
    • doi: 10.1046/j.1472-4669.2003.00010.x
    • Francis, C. A., O'Mullan, G. D., and Ward, B. B. (2003). Diversity of ammonia monooxygenase (amoA) genes across environmental gradients in Chesapeake Bay sediments. Geobiology 1, 129-140. doi: 10.1046/j.1472-4669.2003.00010.x
    • (2003) Geobiology , vol.1 , pp. 129-140
    • Francis, C.A.1    O'Mullan, G.D.2    Ward, B.B.3
  • 23
    • 84870431038 scopus 로고    scopus 로고
    • CD-HIT: accelerated for clustering the next-generation sequencing data
    • doi: 10.1093/bioinformatics/bts565
    • Fu, L., Niu, B., Zhu, Z., Wu, S., and Li, W. (2012). CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 28, 3150-3152. doi: 10.1093/bioinformatics/bts565
    • (2012) Bioinformatics , vol.28 , pp. 3150-3152
    • Fu, L.1    Niu, B.2    Zhu, Z.3    Wu, S.4    Li, W.5
  • 24
    • 84859571764 scopus 로고    scopus 로고
    • Free-living and aggregate-associated Planctomycetes in the Black Sea
    • doi: 10.1111/j.1574-6941.2012.01306.x
    • Fuchsman, C. A., Staley, J. T., Oakley, B. B., Kirkpatrick, J. B., and Murray, J. W. (2012). Free-living and aggregate-associated Planctomycetes in the Black Sea. FEMS Microbiol. Ecol. 80, 402-416. doi: 10.1111/j.1574-6941.2012.01306.x
    • (2012) FEMS Microbiol. Ecol. , vol.80 , pp. 402-416
    • Fuchsman, C.A.1    Staley, J.T.2    Oakley, B.B.3    Kirkpatrick, J.B.4    Murray, J.W.5
  • 25
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
    • doi: 10.1093/bioinformatics/12.6.543
    • Galtier, N., Gouy, M., and Gautier, C. (1996). SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Bioinformatics 12, 543-548. doi: 10.1093/bioinformatics/12.6.543
    • (1996) Bioinformatics , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 26
    • 81855220912 scopus 로고    scopus 로고
    • The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida
    • doi: 10.1042/BST20110707
    • Gori, F., Tringe, S. G., Kartal, B., Marchiori, E., Machiori, E., and Jetten, M. S. M. (2011). The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida.' Biochem. Soc. Trans. 39, 1799-1804. doi: 10.1042/BST20110707
    • (2011) ' Biochem. Soc. Trans. , vol.39 , pp. 1799-1804
    • Gori, F.1    Tringe, S.G.2    Kartal, B.3    Marchiori, E.4    Machiori, E.5    Jetten, M.S.M.6
  • 27
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • doi: 10.1080/10635150390235520
    • Guindon, S., and Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704. doi: 10.1080/10635150390235520
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 28
    • 70449722860 scopus 로고    scopus 로고
    • Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany)
    • doi: 10.1016/j.syapm.2009.07.009
    • Hamersley, M. R., Woebken, D., Boehrer, B., Schultze, M., Lavik, G., and Kuypers, M. M. M. (2009). Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany). Syst. Appl. Microbiol. 32, 571-582. doi: 10.1016/j.syapm.2009.07.009
    • (2009) Syst. Appl. Microbiol. , vol.32 , pp. 571-582
    • Hamersley, M.R.1    Woebken, D.2    Boehrer, B.3    Schultze, M.4    Lavik, G.5    Kuypers, M.M.M.6
  • 29
    • 84876693362 scopus 로고    scopus 로고
    • More refined diversity of anammox bacteria recovered and distribution in different ecosystems
    • doi: 10.1007/s00253-013-4756-6
    • Han, P., and Gu, J. D. (2013). More refined diversity of anammox bacteria recovered and distribution in different ecosystems. Appl. Microbiol. Biotechnol. 97, 3653-3663. doi: 10.1007/s00253-013-4756-6
    • (2013) Appl. Microbiol. Biotechnol. , vol.97 , pp. 3653-3663
    • Han, P.1    Gu, J.D.2
  • 30
    • 79951511604 scopus 로고    scopus 로고
    • Anammox bacterial diversity in various aquatic ecosystems based on the detection of hydrazine oxidase genes (hzoA/hzoB)
    • doi: 10.1007/s00248-010-9743-1
    • Hirsch, M. D., Long, Z. T., and Song, B. (2011). Anammox bacterial diversity in various aquatic ecosystems based on the detection of hydrazine oxidase genes (hzoA/hzoB). Microb. Ecol. 61, 264-276. doi: 10.1007/s00248-010-9743-1
    • (2011) Microb. Ecol. , vol.61 , pp. 264-276
    • Hirsch, M.D.1    Long, Z.T.2    Song, B.3
  • 31
    • 79960583718 scopus 로고    scopus 로고
    • Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: analyses of marker gene abundance with physical chemical parameters
    • doi: 10.1007/s00248-011-9849-0
    • Hong, Y. G., Li, M., Cao, H., and Gu, J. D. (2011a). Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: analyses of marker gene abundance with physical chemical parameters. Microb. Ecol. 62, 36-47. doi: 10.1007/s00248-011-9849-0
    • (2011) Microb. Ecol. , vol.62 , pp. 36-47
    • Hong, Y.G.1    Li, M.2    Cao, H.3    Gu, J.D.4
  • 32
    • 79952535981 scopus 로고    scopus 로고
    • Diversity and abundance of anammox bacterial community in the deep-ocean surface sediment from equatorial Pacific
    • doi: 10.1007/s00253-010-2925-4
    • Hong, Y. G., Yin, B., and Zheng, T. L. (2011b). Diversity and abundance of anammox bacterial community in the deep-ocean surface sediment from equatorial Pacific. Appl. Microbiol. Biotechnol. 89, 1233-1241. doi: 10.1007/s00253-010-2925-4
    • (2011) Appl. Microbiol. Biotechnol. , vol.89 , pp. 1233-1241
    • Hong, Y.G.1    Yin, B.2    Zheng, T.L.3
  • 33
    • 84886677864 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation (anammox) bacterial diversity, abundance, and activity in marsh sediments of the Yangtze Estuary
    • doi: 10.1002/jgrg.20108
    • Hou, L., Zheng, Y., Liu, M., Gong, J., Zhang, X., Yin, G., et al. (2013). Anaerobic ammonium oxidation (anammox) bacterial diversity, abundance, and activity in marsh sediments of the Yangtze Estuary. J. Geophys. Res. 118, 1237-1246. doi: 10.1002/jgrg.20108
    • (2013) J. Geophys. Res. , vol.118 , pp. 1237-1246
    • Hou, L.1    Zheng, Y.2    Liu, M.3    Gong, J.4    Zhang, X.5    Yin, G.6
  • 35
    • 84863376263 scopus 로고    scopus 로고
    • The influence of intense chemical pollution on the community composition, diversity and abundance of anammox bacteria in the Jiaojiang Estuary (China)
    • doi: 10.1371/journal.pone.0033826
    • Hu, B. L., Shen, L. D., Du, P., Zheng, P., Xu, X., and Zeng, J. (2012a). The influence of intense chemical pollution on the community composition, diversity and abundance of anammox bacteria in the Jiaojiang Estuary (China). PLoS ONE 7:e33826. doi: 10.1371/journal.pone.0033826
    • (2012) PLoS ONE , vol.7
    • Hu, B.L.1    Shen, L.D.2    Du, P.3    Zheng, P.4    Xu, X.5    Zeng, J.6
  • 36
    • 84876813111 scopus 로고    scopus 로고
    • Enrichment of an anammox bacterial community from a flooded paddy soil. Environ
    • doi: 10.1111/1758-2229.12038
    • Hu, B. L., Shen, L. D., Liu, S., Cai, C., Chen, T. T., Kartal, B., et al. (2013). Enrichment of an anammox bacterial community from a flooded paddy soil. Environ. Microbiol. Rep. 5, 483-489. doi: 10.1111/1758-2229.12038
    • (2013) Microbiol. Rep. , vol.5 , pp. 483-489
    • Hu, B.L.1    Shen, L.D.2    Liu, S.3    Cai, C.4    Chen, T.T.5    Kartal, B.6
  • 37
    • 84867178866 scopus 로고    scopus 로고
    • Distribution and diversity of anaerobic ammonium-oxidizing bacteria in the sediments of the Qiantang River
    • doi: 10.1111/j.1758-2229.2012.00360.x
    • Hu, B. L., Shen, L. D., Zheng, P., Hu, A. H., Chen, T. T., Cai, C., et al. (2012b). Distribution and diversity of anaerobic ammonium-oxidizing bacteria in the sediments of the Qiantang River. Environ. Microbiol. Rep. 4, 540-547. doi: 10.1111/j.1758-2229.2012.00360.x
    • (2012) Environ. Microbiol. Rep. , vol.4 , pp. 540-547
    • Hu, B.L.1    Shen, L.D.2    Zheng, P.3    Hu, A.H.4    Chen, T.T.5    Cai, C.6
  • 38
    • 77957295884 scopus 로고    scopus 로고
    • Identification and quantification of anammox bacteria in eight nitrogen removal reactors
    • doi: 10.1016/j.watres.2010.07.021
    • Hu, B. L., Zheng, P., Tang, C. J., Chen, J. W., van der Biezen, E., Zhang, L., et al. (2010). Identification and quantification of anammox bacteria in eight nitrogen removal reactors. Water Res. 44, 5014-5020. doi: 10.1016/j.watres.2010.07.021
    • (2010) Water Res , vol.44 , pp. 5014-5020
    • Hu, B.L.1    Zheng, P.2    Tang, C.J.3    Chen, J.W.4    van der Biezen, E.5    Zhang, L.6
  • 39
    • 84873299746 scopus 로고    scopus 로고
    • Metagenome analysis of a complex community reveals the metabolic blueprint of anammox bacterium Candidatus Jettenia asiatica
    • doi: 10.3389/fmicb.2012.00366
    • Hu, Z., Speth, D. R., Francoijs, K. J., Quan, Z. X., and Jetten, M. S. M. (2012c). Metagenome analysis of a complex community reveals the metabolic blueprint of anammox bacterium "Candidatus Jettenia asiatica." Front. Microbiol. 3:366. doi: 10.3389/fmicb.2012.00366
    • (2012) Front. Microbiol. , vol.3 , pp. 366
    • Hu, Z.1    Speth, D.R.2    Francoijs, K.J.3    Quan, Z.X.4    Jetten, M.S.M.5
  • 40
    • 77149154647 scopus 로고    scopus 로고
    • Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity
    • doi: 10.1038/ismej.2009.125
    • Humbert, S., Tarnawski, S., Fromin, N., Mallet, M. P., Aragno, M., and Zopfi, J. (2010). Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity. ISME J. 4, 450-454. doi: 10.1038/ismej.2009.125
    • (2010) ISME J , vol.4 , pp. 450-454
    • Humbert, S.1    Tarnawski, S.2    Fromin, N.3    Mallet, M.P.4    Aragno, M.5    Zopfi, J.6
  • 41
    • 75749096744 scopus 로고    scopus 로고
    • Molecular evidence for anaerobic ammonium-oxidizing (anammox) bacteria in continental shelf and slope sediments off northwest Africa
    • doi: 10.4319/lo.2010.55.1.0365
    • Jaeschke, A., Abbas, B., Zabel, M., Hopmans, E. C., Schouten, S., and Sinninghe Damsté, J. S. (2010). Molecular evidence for anaerobic ammonium-oxidizing (anammox) bacteria in continental shelf and slope sediments off northwest Africa. Limnol. Oceanogr. 55, 365-376. doi: 10.4319/lo.2010.55.1.0365
    • (2010) Limnol. Oceanogr. , vol.55 , pp. 365-376
    • Jaeschke, A.1    Abbas, B.2    Zabel, M.3    Hopmans, E.C.4    Schouten, S.5    Sinninghe Damsté, J.S.6
  • 42
    • 80052962331 scopus 로고    scopus 로고
    • Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium
    • doi: 10.1038/ismej.2011.44
    • Jensen, M. M., Lam, P., Revsbech, N. P., Nagel, B., Gaye, B., Jetten, M. S. M., et al. (2011). Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium. ISME J. 5, 1660-1670. doi: 10.1038/ismej.2011.44
    • (2011) ISME J , vol.5 , pp. 1660-1670
    • Jensen, M.M.1    Lam, P.2    Revsbech, N.P.3    Nagel, B.4    Gaye, B.5    Jetten, M.S.M.6
  • 45
    • 33750311308 scopus 로고    scopus 로고
    • Adaptation of a freshwater anammox population to high salinity wastewater
    • doi: 10.1016/j.jbiotec.2006.05.012
    • Kartal, B., Koleva, M., Arsov, R., van der Star, W. R., Jetten, M. S. M., and Strous, M. (2006). Adaptation of a freshwater anammox population to high salinity wastewater. J. Biotechnol. 126, 546-553. doi: 10.1016/j.jbiotec.2006.05.012
    • (2006) J. Biotechnol. , vol.126 , pp. 546-553
    • Kartal, B.1    Koleva, M.2    Arsov, R.3    van der Star, W.R.4    Jetten, M.S.M.5    Strous, M.6
  • 46
    • 33845714911 scopus 로고    scopus 로고
    • Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria
    • doi: 10.1016/j.syapm.2006.03.004
    • Kartal, B., Rattray, J., van Niftrik, L. A., van de Vossenberg, J., Schmid, M. C., Webb, R. I., et al. (2007). Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Syst. Appl. Microbiol. 30, 39-49. doi: 10.1016/j.syapm.2006.03.004
    • (2007) Syst. Appl. Microbiol. , vol.30 , pp. 39-49
    • Kartal, B.1    Rattray, J.2    van Niftrik, L.A.3    van de Vossenberg, J.4    Schmid, M.C.5    Webb, R.I.6
  • 47
  • 48
    • 60449094818 scopus 로고    scopus 로고
    • Anammox in tidal marsh sediments: the role of salinity, nitrogen loading, and marsh vegetation
    • doi: 10.1007/s12237-008-9131-y
    • Koop-Jakobsen, K., and Giblin, A. E. (2009). Anammox in tidal marsh sediments: the role of salinity, nitrogen loading, and marsh vegetation. Estuaries Coasts 32, 238-245. doi: 10.1007/s12237-008-9131-y
    • (2009) Estuaries Coasts , vol.32 , pp. 238-245
    • Koop-Jakobsen, K.1    Giblin, A.E.2
  • 49
    • 0000408280 scopus 로고    scopus 로고
    • Extraordinary anaerobic ammonium oxidizing bacteria
    • Kuenen, J. G., and Jetten, M. S. M. (2001). Extraordinary anaerobic ammonium oxidizing bacteria. Am. Soc. Microbiol. News 67, 456-463.
    • (2001) Am. Soc. Microbiol. News , vol.67 , pp. 456-463
    • Kuenen, J.G.1    Jetten, M.S.M.2
  • 50
    • 18144367022 scopus 로고    scopus 로고
    • Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation
    • doi: 10.1073/pnas.0502088102
    • Kuypers, M. M. M., Lavik, G., Woebken, D., Schmid, M. C., Fuchs, B. M., Amann, R., et al. (2005). Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. Proc. Natl. Acad. Sci. U.S.A. 102, 6478-6483. doi: 10.1073/pnas.0502088102
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 6478-6483
    • Kuypers, M.M.M.1    Lavik, G.2    Woebken, D.3    Schmid, M.C.4    Fuchs, B.M.5    Amann, R.6
  • 51
    • 0242515747 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation by anammox bacteria in the Black Sea
    • doi: 10.1038/nature01472
    • Kuypers, M. M. M., Sliekers, A. O., Lavik, G., Schmid, M. C., Jørgensen, B. B., Kuenen, J. G., et al. (2003). Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 422, 608-611. doi: 10.1038/nature01472
    • (2003) Nature , vol.422 , pp. 608-611
    • Kuypers, M.M.M.1    Sliekers, A.O.2    Lavik, G.3    Schmid, M.C.4    Jørgensen, B.B.5    Kuenen, J.G.6
  • 52
    • 78650936059 scopus 로고    scopus 로고
    • Microbial nitrogen cycling processes in oxygen minimum zones
    • doi: 10.1146/annurev-marine-120709-142814
    • Lam, P., and Kuypers, M. M. M. (2011). Microbial nitrogen cycling processes in oxygen minimum zones. Annu. Rev. Marine Sci. 3, 317-345. doi: 10.1146/annurev-marine-120709-142814
    • (2011) Annu. Rev. Marine Sci. , vol.3 , pp. 317-345
    • Lam, P.1    Kuypers, M.M.M.2
  • 53
    • 78149471109 scopus 로고    scopus 로고
    • Molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in high-temperature petroleum reservoirs
    • doi: 10.1007/s00248-010-9733-3
    • Li, H., Chen, S., Mu, B. Z., and Gu, J. D. (2010). Molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in high-temperature petroleum reservoirs. Microb. Ecol. 60, 771-783. doi: 10.1007/s00248-010-9733-3
    • (2010) Microb. Ecol. , vol.60 , pp. 771-783
    • Li, H.1    Chen, S.2    Mu, B.Z.3    Gu, J.D.4
  • 54
    • 84888435699 scopus 로고    scopus 로고
    • Community structure and transcript responses of anammox bacteria, AOA, and AOB in mangrove sediment microcosms amended with ammonium and nitrite
    • doi: 10.1007/s00253-012-4683-y
    • Li, M., and Gu, J. D. (2013). Community structure and transcript responses of anammox bacteria, AOA, and AOB in mangrove sediment microcosms amended with ammonium and nitrite. Appl. Microbiol. Biotechnol. 97, 9859-9874. doi: 10.1007/s00253-012-4683-y
    • (2013) Appl. Microbiol. Biotechnol. , vol.97 , pp. 9859-9874
    • Li, M.1    Gu, J.D.2
  • 55
    • 84880048169 scopus 로고    scopus 로고
    • Community structures and distribution of anaerobic ammonium oxidizing and nirS-encoding nitrite-reducing bacteria in surface sediments of the South China Sea
    • doi: 10.1007/s00248-012-0175-y
    • Li, M., Hong, Y., Cao, H., and Gu, J. D. (2013). Community structures and distribution of anaerobic ammonium oxidizing and nirS-encoding nitrite-reducing bacteria in surface sediments of the South China Sea. Microb. Ecol. 66, 281-296. doi: 10.1007/s00248-012-0175-y
    • (2013) Microb. Ecol. , vol.66 , pp. 281-296
    • Li, M.1    Hong, Y.2    Cao, H.3    Gu, J.D.4
  • 56
    • 80054942788 scopus 로고    scopus 로고
    • Mangrove trees affect the community structure and distribution of anammox bacteria at an anthropogenic-polluted mangrove in the Pearl River Delta reflected by 16S rRNA and hydrazine oxidoreductase (HZO) encoding gene analyses
    • doi: 10.1007/s10646-011-0711-4
    • Li, M., Hong, Y. G., Cao, H. L., and Gu, J. D. (2011). Mangrove trees affect the community structure and distribution of anammox bacteria at an anthropogenic-polluted mangrove in the Pearl River Delta reflected by 16S rRNA and hydrazine oxidoreductase (HZO) encoding gene analyses. Ecotoxicology 20, 1780-1790. doi: 10.1007/s10646-011-0711-4
    • (2011) Ecotoxicology , vol.20 , pp. 1780-1790
    • Li, M.1    Hong, Y.G.2    Cao, H.L.3    Gu, J.D.4
  • 57
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • doi: 10.1128/AEM.71.12.8228-8235.2005
    • Lozupone, C. A., and Knight, R. (2005). UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235. doi: 10.1128/AEM.71.12.8228-8235.2005
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.A.1    Knight, R.2
  • 58
    • 34547433545 scopus 로고    scopus 로고
    • Global patterns in bacterial diversity
    • doi: 10.1073/pnas.0611525104
    • Lozupone, C. A., and Knight, R. (2007). Global patterns in bacterial diversity. Proc. Natl. Acad. Sci. U.S.A. 104, 11436-11440. doi: 10.1073/pnas.0611525104
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 11436-11440
    • Lozupone, C.A.1    Knight, R.2
  • 59
    • 84991528732 scopus 로고    scopus 로고
    • AXIOME: automated exploration of microbial diversity
    • doi: 10.1186/2047-217X-2-3
    • Lynch, M. D., Masella, A. P., Hall, M. W., Bartram, A. K., and Neufeld, J. D. (2013). AXIOME: automated exploration of microbial diversity. GigaScience 2:3. doi: 10.1186/2047-217X-2-3
    • (2013) GigaScience , vol.2 , pp. 3
    • Lynch, M.D.1    Masella, A.P.2    Hall, M.W.3    Bartram, A.K.4    Neufeld, J.D.5
  • 60
    • 80052251699 scopus 로고    scopus 로고
    • Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater
    • doi: 10.1021/es201243t
    • Moore, T. A., Xing, Y., Lazenby, B., Lynch, M. D., Schiff, S., Robertson, W. D., et al. (2011). Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater. Environ. Sci. Technol. 45, 7217-7225. doi: 10.1021/es201243t
    • (2011) Environ. Sci. Technol. , vol.45 , pp. 7217-7225
    • Moore, T.A.1    Xing, Y.2    Lazenby, B.3    Lynch, M.D.4    Schiff, S.5    Robertson, W.D.6
  • 61
    • 0028940437 scopus 로고
    • Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor
    • doi: 10.1111/j.1574-6941.1995.tb00281.x
    • Mulder, A., van de Graaf, A. A., Robertson, L. A., and Kuenen, J. G. (1995). Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor. FEMS Microbiol. Ecol. 16, 177-183. doi: 10.1111/j.1574-6941.1995.tb00281.x
    • (1995) FEMS Microbiol. Ecol. , vol.16 , pp. 177-183
    • Mulder, A.1    van de Graaf, A.A.2    Robertson, L.A.3    Kuenen, J.G.4
  • 62
    • 37249019141 scopus 로고    scopus 로고
    • Enrichment of anammox bacteria from marine environment for the construction of a bioremediation reactor
    • doi: 10.1007/s00253-007-1247-7
    • Nakajima, J., Sakka, M., Kimura, T., Furukawa, K., and Sakka, K. (2008). Enrichment of anammox bacteria from marine environment for the construction of a bioremediation reactor. Appl. Microbiol. Biotechnol. 77, 1159-1166. doi: 10.1007/s00253-007-1247-7
    • (2008) Appl. Microbiol. Biotechnol. , vol.77 , pp. 1159-1166
    • Nakajima, J.1    Sakka, M.2    Kimura, T.3    Furukawa, K.4    Sakka, K.5
  • 63
    • 84890037468 scopus 로고    scopus 로고
    • Infernal 1.1: 100-fold faster RNA homology searches
    • doi: 10.1093/bioinformatics/btt509
    • Nawrocki, E. P., and Eddy, S. R. (2013). Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics 29, 2933-2935. doi: 10.1093/bioinformatics/btt509
    • (2013) Bioinformatics 29 , pp. 2933-2935
    • Nawrocki, E.P.1    Eddy, S.R.2
  • 65
    • 84865961410 scopus 로고    scopus 로고
    • Temperature dependence for anammox bacteria enriched from freshwater sediments
    • doi: 10.1016/j.jbiosc.2012.05.003
    • Osaka, T., Kimura, Y., Otsubo, Y., Suwa, Y., Tsuneda, S., and Isaka, K. (2012). Temperature dependence for anammox bacteria enriched from freshwater sediments. J. Biosci. Bioeng. 114, 429-434. doi: 10.1016/j.jbiosc.2012.05.003
    • (2012) J. Biosci. Bioeng. , vol.114 , pp. 429-434
    • Osaka, T.1    Kimura, Y.2    Otsubo, Y.3    Suwa, Y.4    Tsuneda, S.5    Isaka, K.6
  • 66
    • 79958106145 scopus 로고    scopus 로고
    • Physiological characteristics of the anaerobic ammonium-oxidizing bacterium "Candidatus Brocadia sinica."
    • doi: 10.1099/mic.0.048595-0
    • Oshiki, M., Shimokawa, M., Fujii, N., Satoh, H., and Okabe, S. (2011). Physiological characteristics of the anaerobic ammonium-oxidizing bacterium "Candidatus Brocadia sinica." Microbiology 157, 1706-1713. doi: 10.1099/mic.0.048595-0
    • (2011) Microbiology , vol.157 , pp. 1706-1713
    • Oshiki, M.1    Shimokawa, M.2    Fujii, N.3    Satoh, H.4    Okabe, S.5
  • 67
    • 77957314110 scopus 로고    scopus 로고
    • Impact of inocula and growth mode on the molecular microbial ecology of anaerobic ammonia oxidation (anammox) bioreactor communities
    • doi: 10.1016/j.watres.2010.07.022
    • Park, H., Rosenthal, A., Jezek, R., Ramalingam, K., Fillos, J., and Chandran, K. (2010). Impact of inocula and growth mode on the molecular microbial ecology of anaerobic ammonia oxidation (anammox) bioreactor communities. Water Res. 44, 5005-5013. doi: 10.1016/j.watres.2010.07.022
    • (2010) Water Res , vol.44 , pp. 5005-5013
    • Park, H.1    Rosenthal, A.2    Jezek, R.3    Ramalingam, K.4    Fillos, J.5    Chandran, K.6
  • 68
    • 79954622990 scopus 로고    scopus 로고
    • Comparison of primer sets for the study of Planctomycetes communities in lentic freshwater ecosystems
    • doi: 10.1111/j.1758-2229.2010.00219.x
    • Pollet, T., Tadonléké, R. D., and Humbert, J. F. (2011). Comparison of primer sets for the study of Planctomycetes communities in lentic freshwater ecosystems. Environ. Microbiol. Rep. 3, 254-261. doi: 10.1111/j.1758-2229.2010.00219.x
    • (2011) Environ. Microbiol. Rep. , vol.3 , pp. 254-261
    • Pollet, T.1    Tadonléké, R.D.2    Humbert, J.F.3
  • 69
    • 52949144536 scopus 로고    scopus 로고
    • Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor
    • doi: 10.1111/j.1462-2920.2008.01642.x
    • Quan, Z. X., Rhee, S. K., Zuo, J. E., Yang, Y., Bae, J. W., Park, J. R., et al. (2008). Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor. Environ. Microbiol. 10, 3130-3139. doi: 10.1111/j.1462-2920.2008.01642.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 3130-3139
    • Quan, Z.X.1    Rhee, S.K.2    Zuo, J.E.3    Yang, Y.4    Bae, J.W.5    Park, J.R.6
  • 71
    • 38649094238 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments
    • doi: 10.1007/s00248-007-9277-3
    • Rich, J. J., Dale, O. R., Song, B., and Ward, B. B. (2008). Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments. Microb. Ecol. 55, 311-320. doi: 10.1007/s00248-007-9277-3
    • (2008) Microb. Ecol. , vol.55 , pp. 311-320
    • Rich, J.J.1    Dale, O.R.2    Song, B.3    Ward, B.B.4
  • 73
    • 84884257773 scopus 로고    scopus 로고
    • Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin
    • doi: 10.3389/fmicb.2013.00219
    • Russ, L., Kartal, B., Op Den Camp, H. J. M., Sollai, M., Le Bruchec, J., Caprais, J. C., et al. (2013). Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin. Front. Microbiol. 4:219. doi: 10.3389/fmicb.2013.00219
    • (2013) Front. Microbiol. , vol.4 , pp. 219
    • Russ, L.1    Kartal, B.2    Op Den Camp, H.J.M.3    Sollai, M.4    Le Bruchec, J.5    Caprais, J.C.6
  • 74
    • 0032944999 scopus 로고    scopus 로고
    • Effects of salinity on NH+4 adsorption capacity, nitrification, and denitrification in Danish estuarine sediments
    • doi: 10.2307/1352923
    • Rysgaard, S., Thastum, P., Dalsgaard, T., Christensen, P. B., and Sloth, N. P. (1999). Effects of salinity on NH+4 adsorption capacity, nitrification, and denitrification in Danish estuarine sediments. Estuaries Coasts 22, 21-30. doi: 10.2307/1352923
    • (1999) Estuaries Coasts , vol.22 , pp. 21-30
    • Rysgaard, S.1    Thastum, P.2    Dalsgaard, T.3    Christensen, P.B.4    Sloth, N.P.5
  • 75
    • 40949097432 scopus 로고    scopus 로고
    • Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary
    • doi: 10.1111/j.1462-2920.2007.01547.x
    • Santoro, A. E., Francis, C. A., De Sieyes, N. R., and Boehm, A. B. (2008). Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ. Microbiol. 10, 1068-1079. doi: 10.1111/j.1462-2920.2007.01547.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 1068-1079
    • Santoro, A.E.1    Francis, C.A.2    De Sieyes, N.R.3    Boehm, A.B.4
  • 76
    • 34248587996 scopus 로고    scopus 로고
    • Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity
    • doi: 10.1111/j.1462-2920.2007.01266.x
    • Schmid, M. C., Risgaard-Petersen, N., van de Vossenberg, J., Kuypers, M. M. M., Lavik, G., Petersen, J., et al. (2007). Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity. Environ. Microbiol. 9, 1476-1484. doi: 10.1111/j.1462-2920.2007.01266.x
    • (2007) Environ. Microbiol. , vol.9 , pp. 1476-1484
    • Schmid, M.C.1    Risgaard-Petersen, N.2    van de Vossenberg, J.3    Kuypers, M.M.M.4    Lavik, G.5    Petersen, J.6
  • 77
    • 0034096495 scopus 로고    scopus 로고
    • Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation
    • doi: 10.1016/S0723-2020(00)80050-8
    • Schmid, M. C., Twachtmann, U., Klein, M., Strous, M., Juretschko, S., Jetten, M. S. M., et al. (2000). Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. Syst. Appl. Microbiol. 23, 93-106. doi: 10.1016/S0723-2020(00)80050-8
    • (2000) Syst. Appl. Microbiol. , vol.23 , pp. 93-106
    • Schmid, M.C.1    Twachtmann, U.2    Klein, M.3    Strous, M.4    Juretschko, S.5    Jetten, M.S.M.6
  • 78
    • 10744230197 scopus 로고    scopus 로고
    • Candidatus "Scalindua brodae," sp. nov., Candidatus "Scalindua wagneri," sp. nov., two new species of anaerobic ammonium oxidizing bacteria
    • doi: 10.1078/072320203770865837
    • Schmid, M. C., Walsh, K., Webb, R., Rijpstra, W. I., van de Pas-Schoonen, K. T., Verbruggen, M. J., et al. (2003). Candidatus "Scalindua brodae," sp. nov., Candidatus "Scalindua wagneri," sp. nov., two new species of anaerobic ammonium oxidizing bacteria. Syst. Appl. Microbiol. 26, 529-538. doi: 10.1078/072320203770865837
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 529-538
    • Schmid, M.C.1    Walsh, K.2    Webb, R.3    Rijpstra, W.I.4    van de Pas-Schoonen, K.T.5    Verbruggen, M.J.6
  • 79
    • 33748305565 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika)
    • doi: 10.1111/j.1462-2920.2006.01074.x
    • Schubert, C. J., Durisch-Kaiser, E., Wehrli, B., Lam, P., and Kuypers, M. M. M. (2006). Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika). Environ. Microbiol. 8, 1857-1863. doi: 10.1111/j.1462-2920.2006.01074.x
    • (2006) Environ. Microbiol. , vol.8 , pp. 1857-1863
    • Schubert, C.J.1    Durisch-Kaiser, E.2    Wehrli, B.3    Lam, P.4    Kuypers, M.M.M.5
  • 80
    • 84895077467 scopus 로고    scopus 로고
    • Deep-sea methane seep sediments in the Okhotsk Sea sustain diverse and abundant anammox bacteria
    • doi: 10.1111/1574-6941.12241
    • Shao, S., Luan, X., Dang, H., Zhou, H., Zhao, Y., Liu, H., et al. (2014). Deep-sea methane seep sediments in the Okhotsk Sea sustain diverse and abundant anammox bacteria. FEMS Microbiol. Ecol. 87, 503-516. doi: 10.1111/1574-6941.12241
    • (2014) FEMS Microbiol. Ecol. , vol.87 , pp. 503-516
    • Shao, S.1    Luan, X.2    Dang, H.3    Zhou, H.4    Zhao, Y.5    Liu, H.6
  • 81
    • 84884171238 scopus 로고    scopus 로고
    • Broad distribution of diverse anaerobic ammonium-oxidizing bacteria in Chinese agricultural soils
    • doi: 10.1128/AEM.00884-13
    • Shen, L. D., Liu, S., Lou, L. P., Liu, W. P., Xu, X. Y., Zheng, P., et al. (2013). Broad distribution of diverse anaerobic ammonium-oxidizing bacteria in Chinese agricultural soils. Appl. Environ. Microbiol. 79, 6167-6172. doi: 10.1128/AEM.00884-13
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 6167-6172
    • Shen, L.D.1    Liu, S.2    Lou, L.P.3    Liu, W.P.4    Xu, X.Y.5    Zheng, P.6
  • 82
    • 84862336430 scopus 로고    scopus 로고
    • Ammonia transformations and abundance of ammonia oxidizers in a clay soil underlying a manure pond
    • doi: 10.1111/j.1574-6941.2012.01347.x
    • Sher, Y., Baram, S., Dahan, O., Ronen, Z., and Nejidat, A. (2012). Ammonia transformations and abundance of ammonia oxidizers in a clay soil underlying a manure pond. FEMS Microbiol. Ecol. 81, 145-155. doi: 10.1111/j.1574-6941.2012.01347.x
    • (2012) FEMS Microbiol. Ecol. , vol.81 , pp. 145-155
    • Sher, Y.1    Baram, S.2    Dahan, O.3    Ronen, Z.4    Nejidat, A.5
  • 83
    • 84875885048 scopus 로고    scopus 로고
    • Benthic nitrogen loss in the Arabian Sea off Pakistan
    • doi: 10.3389/fmicb.2012.00395
    • Sokoll, S., Holtappels, M., Lam, P., Collins, G., Schlüter, M., Lavik, G., et al. (2012). Benthic nitrogen loss in the Arabian Sea off Pakistan. Front. Microbiol. 3:395. doi: 10.3389/fmicb.2012.00395
    • (2012) Front. Microbiol. , vol.3 , pp. 395
    • Sokoll, S.1    Holtappels, M.2    Lam, P.3    Collins, G.4    Schlüter, M.5    Lavik, G.6
  • 84
    • 84888250559 scopus 로고    scopus 로고
    • Wastewater effluent impacts ammonia-oxidizing prokaryotes of the Grand River, Canada
    • doi: 10.1128/AEM.02202-13
    • Sonthiphand, P., Cejudo, E., Schiff, S. L., and Neufeld, J. D. (2013). Wastewater effluent impacts ammonia-oxidizing prokaryotes of the Grand River, Canada. Appl. Environ. Microbiol. 79, 7454-7465. doi: 10.1128/AEM.02202-13
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 7454-7465
    • Sonthiphand, P.1    Cejudo, E.2    Schiff, S.L.3    Neufeld, J.D.4
  • 85
    • 84874706783 scopus 로고    scopus 로고
    • Evaluating primers for profiling anaerobic ammonia oxidizing bacteria within freshwater environments
    • doi: 10.1371/journal.pone.0057242
    • Sonthiphand, P., and Neufeld, J. D. (2013). Evaluating primers for profiling anaerobic ammonia oxidizing bacteria within freshwater environments. PLoS ONE 8:e57242. doi: 10.1371/journal.pone.0057242
    • (2013) PLoS ONE , vol.8
    • Sonthiphand, P.1    Neufeld, J.D.2
  • 86
    • 84873311598 scopus 로고    scopus 로고
    • Comparative genomics of two independently enriched "Candidatus Kuenenia stuttgartiensis" anammox bacteria
    • doi: 10.3389/fmicb.2012.00307
    • Speth, D. R., Hu, B., Bosch, N., Keltjens, J. T., Stunnenberg, H. G., and Jetten, M. S. M. (2012). Comparative genomics of two independently enriched "Candidatus Kuenenia stuttgartiensis" anammox bacteria. Front. Microbiol. 3:307. doi: 10.3389/fmicb.2012.00307
    • (2012) Front. Microbiol. , vol.3 , pp. 307
    • Speth, D.R.1    Hu, B.2    Bosch, N.3    Keltjens, J.T.4    Stunnenberg, H.G.5    Jetten, M.S.M.6
  • 87
    • 0031762559 scopus 로고    scopus 로고
    • The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms
    • doi: 10.1007/s002530051340
    • Strous, M., Heijnen, J., Kuenen, J. G., and Jetten, M. S. M. (1998). The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms. Appl. Microbiol. Biotechnol. 50, 589-596. doi: 10.1007/s002530051340
    • (1998) Appl. Microbiol. Biotechnol. , vol.50 , pp. 589-596
    • Strous, M.1    Heijnen, J.2    Kuenen, J.G.3    Jetten, M.S.M.4
  • 89
    • 33645741019 scopus 로고    scopus 로고
    • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
    • doi: 10.1038/nature04647
    • Strous, M., Pelletier, E., Mangenot, S., Rattei, T., Lehner, A., Taylor, M. W., et al. (2006). Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440, 790-794. doi: 10.1038/nature04647
    • (2006) Nature , vol.440 , pp. 790-794
    • Strous, M.1    Pelletier, E.2    Mangenot, S.3    Rattei, T.4    Lehner, A.5    Taylor, M.W.6
  • 90
    • 84892538632 scopus 로고    scopus 로고
    • Molecular diversity and distribution of anammox community in sediments of the Dongjiang River, a drinking water source of Hong Kong
    • doi: 10.1111/jam.12367
    • Sun, W., Xu, M. Y., Wu, W. M., Guo, J., Xia, C. Y., Sun, G. P., et al. (2014). Molecular diversity and distribution of anammox community in sediments of the Dongjiang River, a drinking water source of Hong Kong. J. Appl. Microbiol. 116, 464-476. doi: 10.1111/jam.12367
    • (2014) J. Appl. Microbiol. , vol.116 , pp. 464-476
    • Sun, W.1    Xu, M.Y.2    Wu, W.M.3    Guo, J.4    Xia, C.Y.5    Sun, G.P.6
  • 91
    • 0035705893 scopus 로고    scopus 로고
    • The CANON system (completely autotrophic nitrogen-removal over nitrite) under ammonium limitation: interaction and competition between three groups of bacteria
    • doi: 10.1078/0723-2020-00077
    • Third, K., Sliekers, A. O., Kuenen, J. G., and Jetten, M. S. M. (2001). The CANON system (completely autotrophic nitrogen-removal over nitrite) under ammonium limitation: interaction and competition between three groups of bacteria. Syst. Appl. Microbiol. 24, 588-596. doi: 10.1078/0723-2020-00077
    • (2001) Syst. Appl. Microbiol. , vol.24 , pp. 588-596
    • Third, K.1    Sliekers, A.O.2    Kuenen, J.G.3    Jetten, M.S.M.4
  • 92
    • 84865159612 scopus 로고    scopus 로고
    • The environmental distribution, activity and ecology of anammox
    • eds B. B. Ward, M. G. Klotz, and D. J. Arp (Washington, DC: ASM Press)
    • Trimmer, M., and Engström, P. (2011). "The environmental distribution, activity and ecology of anammox," in Nitrification, eds B. B. Ward, M. G. Klotz, and D. J. Arp (Washington, DC: ASM Press), 201-235.
    • (2011) Nitrification , pp. 201-235
    • Trimmer, M.1    Engström, P.2
  • 93
    • 84888215440 scopus 로고    scopus 로고
    • Stark contrast in denitrification and anammox across the deep Norwegian trench in the Skagerrak
    • doi: 10.1128/AEM.01970-13
    • Trimmer, M., Engström, P., and Thamdrup, B. (2013). Stark contrast in denitrification and anammox across the deep Norwegian trench in the Skagerrak. Appl. Environ. Microbiol. 79, 7381-7389. doi: 10.1128/AEM.01970-13
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 7381-7389
    • Trimmer, M.1    Engström, P.2    Thamdrup, B.3
  • 94
    • 0242489226 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation measured in sediments along the Thames estuary, United Kingdom
    • doi: 10.1128/AEM.69.11.6447-6454.2003
    • Trimmer, M., Nicholls, J. C., and Deflandre, B. (2003). Anaerobic ammonium oxidation measured in sediments along the Thames estuary, United Kingdom. Appl. Environ. Microbiol. 69, 6447-6454. doi: 10.1128/AEM.69.11.6447-6454.2003
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6447-6454
    • Trimmer, M.1    Nicholls, J.C.2    Deflandre, B.3
  • 96
    • 33846946594 scopus 로고    scopus 로고
    • Startup of reactors for anoxic ammonium oxidation: experiences from the first full-scale anammox reactor in Rotterdam
    • doi: 10.1016/j.watres.2007.03.044
    • van der Star, W. R., Abma, W. R., Blommers, D., Mulder, J. W., Tokutomi, T., Strous, M., et al. (2007). Startup of reactors for anoxic ammonium oxidation: experiences from the first full-scale anammox reactor in Rotterdam. Water Res. 41, 4149-4163. doi: 10.1016/j.watres.2007.03.044
    • (2007) Water Res , vol.41 , pp. 4149-4163
    • van der Star, W.R.1    Abma, W.R.2    Blommers, D.3    Mulder, J.W.4    Tokutomi, T.5    Strous, M.6
  • 99
    • 52949118049 scopus 로고    scopus 로고
    • Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production
    • doi: 10.1111/j.1462-2920.2008.01643.x
    • van de Vossenberg, J., Rattray, J. E., Geerts, W., Kartal, B., van Niftrik, L. A., van Donselaar, E. G., et al. (2008). Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production. Environ. Microbiol. 10, 3120-3129. doi: 10.1111/j.1462-2920.2008.01643.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 3120-3129
    • van de Vossenberg, J.1    Rattray, J.E.2    Geerts, W.3    Kartal, B.4    van Niftrik, L.A.5    van Donselaar, E.G.6
  • 100
    • 84876498355 scopus 로고    scopus 로고
    • The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium
    • doi: 10.1111/j.1462-2920.2012.02774.x
    • van de Vossenberg, J., Woebken, D., Maalcke, W. J., Wessels, H. J., Dutilh, B. E., Kartal, B., et al. (2013). The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium. Environ. Microbiol. 15, 1275-1289. doi: 10.1111/j.1462-2920.2012.02774.x
    • (2013) Environ. Microbiol. , vol.15 , pp. 1275-1289
    • van de Vossenberg, J.1    Woebken, D.2    Maalcke, W.J.3    Wessels, H.J.4    Dutilh, B.E.5    Kartal, B.6
  • 101
    • 0034742536 scopus 로고    scopus 로고
    • The SHARON-Anammox process for treatment of ammonium rich wastewater
    • van Dongen, U., Jetten, M. S. M., and van Loosdrecht, M. C. M. (2001). The SHARON-Anammox process for treatment of ammonium rich wastewater. Water Sci. Technol. 44, 153-160.
    • (2001) Water Sci. Technol. , vol.44 , pp. 153-160
    • van Dongen, U.1    Jetten, M.S.M.2    van Loosdrecht, M.C.M.3
  • 102
    • 84897612783 scopus 로고    scopus 로고
    • Shotgun metagenomic data reveals signifcant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone
    • doi: 10.3389/fmicb.2014.00031
    • Villanueva, L., Speth, D., Vanalen, T., Hoischen, A., and Jetten, M. S. M. (2014). Shotgun metagenomic data reveals signifcant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone. Front. Microbiol. 5:31. doi: 10.3389/fmicb.2014.00031
    • (2014) Front. Microbiol. , vol.5 , pp. 31
    • Villanueva, L.1    Speth, D.2    Vanalen, T.3    Hoischen, A.4    Jetten, M.S.M.5
  • 103
    • 84874354885 scopus 로고    scopus 로고
    • Dominance of Candidatus Scalindua species in anammox community revealed in soils with different duration of rice paddy cultivation in Northeast China
    • doi: 10.1007/s00253-012-4036-x
    • Wang, J., and Gu, J. D. (2013). Dominance of Candidatus Scalindua species in anammox community revealed in soils with different duration of rice paddy cultivation in Northeast China. Appl. Microbiol. Biotechnol. 97, 1785-1798. doi: 10.1007/s00253-012-4036-x
    • (2013) Appl. Microbiol. Biotechnol. , vol.97 , pp. 1785-1798
    • Wang, J.1    Gu, J.D.2
  • 104
    • 84892369224 scopus 로고    scopus 로고
    • Seasonal dynamics of ammonia/ammonium-oxidizing prokaryotes in oxic and anoxic wetland sediments of subtropical coastal mangrove
    • doi: 10.1007/s00253-012-4510-5
    • Wang, Y. F., Feng, Y. Y., Ma, X., and Gu, J. D. (2013). Seasonal dynamics of ammonia/ammonium-oxidizing prokaryotes in oxic and anoxic wetland sediments of subtropical coastal mangrove. Appl. Microbiol. Biotechnol. 97, 7919-7934. doi: 10.1007/s00253-012-4510-5
    • (2013) Appl. Microbiol. Biotechnol. , vol.97 , pp. 7919-7934
    • Wang, Y.F.1    Feng, Y.Y.2    Ma, X.3    Gu, J.D.4
  • 105
    • 52949102049 scopus 로고    scopus 로고
    • A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones
    • doi: 10.1111/j.1462-2920.2008.01640.x
    • Woebken, D., Lam, P., Kuypers, M. M. M., Naqvi, S. W., Kartal, B., Strous, M., et al. (2008). A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ. Microbiol. 10, 3106-3119. doi: 10.1111/j.1462-2920.2008.01640.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 3106-3119
    • Woebken, D.1    Lam, P.2    Kuypers, M.M.M.3    Naqvi, S.W.4    Kartal, B.5    Strous, M.6
  • 106
    • 84865816370 scopus 로고    scopus 로고
    • Molecular detection of novel anammox bacterial clusters in the sediments of the shallow freshwater Lake Taihu
    • doi: 10.1080/01490451.2011.635760
    • Wu, Y., Xiang, Y., Wang, J., and Wu, Q. L. (2012). Molecular detection of novel anammox bacterial clusters in the sediments of the shallow freshwater Lake Taihu. Geomicrobiol. J. 29, 852-859. doi: 10.1080/01490451.2011.635760
    • (2012) Geomicrobiol. J. , vol.29 , pp. 852-859
    • Wu, Y.1    Xiang, Y.2    Wang, J.3    Wu, Q.L.4
  • 107
    • 2442673164 scopus 로고    scopus 로고
    • Salinity decreases nitrite reductase gene diversity in denitrifying bacteria of wastewater treatment systems
    • doi: 10.1128/AEM.70.5.3152-3157.2004
    • Yoshie, S., Noda, N., Tsuneda, S., Hirata, A., and Inamori, Y. (2004). Salinity decreases nitrite reductase gene diversity in denitrifying bacteria of wastewater treatment systems. Appl. Environ. Microbiol. 70, 3152-3157. doi: 10.1128/AEM.70.5.3152-3157.2004
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3152-3157
    • Yoshie, S.1    Noda, N.2    Tsuneda, S.3    Hirata, A.4    Inamori, Y.5
  • 108
    • 80052492355 scopus 로고    scopus 로고
    • Distribution and diversity of anaerobic ammonium oxidation (anammox) bacteria in the sediment of a eutrophic freshwater lake, Lake Kitaura, Japan
    • doi: 10.1264/jsme2.ME10184
    • Yoshinaga, I., Amano, T., Yamagishi, T., Okada, K., Ueda, S., Sako, Y., et al. (2011). Distribution and diversity of anaerobic ammonium oxidation (anammox) bacteria in the sediment of a eutrophic freshwater lake, Lake Kitaura, Japan. Microbes Environ. 26, 189-197. doi: 10.1264/jsme2.ME10184
    • (2011) Microbes Environ , vol.26 , pp. 189-197
    • Yoshinaga, I.1    Amano, T.2    Yamagishi, T.3    Okada, K.4    Ueda, S.5    Sako, Y.6
  • 109
    • 34547684285 scopus 로고    scopus 로고
    • Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China)
    • doi: 10.1111/j.1462-2920.2007.01357.x
    • Zhang, Y., Ruan, X. H., Op den Camp, H. J. M., Smits, T. J. M., Jetten, M. S. M., and Schmid, M. C. (2007). Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China). Environ. Microbiol. 9, 2375-2382. doi: 10.1111/j.1462-2920.2007.01357.x
    • (2007) Environ. Microbiol. , vol.9 , pp. 2375-2382
    • Zhang, Y.1    Ruan, X.H.2    Op den Camp, H.J.M.3    Smits, T.J.M.4    Jetten, M.S.M.5    Schmid, M.C.6
  • 110
    • 81855194039 scopus 로고    scopus 로고
    • Anaerobic ammonia oxidation in a fertilized paddy soil
    • doi: 10.1038/ismej.2011.63
    • Zhu, G., Wang, S., Wang, Y., Wang, C., Risgaard-Petersen, N., Jetten, M. S. M., et al. (2011). Anaerobic ammonia oxidation in a fertilized paddy soil. ISME J. 5, 1905-1912. doi: 10.1038/ismej.2011.63
    • (2011) ISME J , vol.5 , pp. 1905-1912
    • Zhu, G.1    Wang, S.2    Wang, Y.3    Wang, C.4    Risgaard-Petersen, N.5    Jetten, M.S.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.