Landscape resistance and habitat combine to provide an optimal model of genetic structure and connectivity at the range margin of a small mammal

Molecular Ecology

Volumn 23, Issue 16, 2014, Pages 3983-3998

  Marrotte, R R ^a   Gonzalez, A ^a   Millien, V ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

connectivity; gene flow; landscape resistance; local habitat; Peromyscus leucopus

Indexed keywords

MAMMALIA; PEROMYSCUS; PEROMYSCUS LEUCOPUS;

AGRICULTURE; ANIMAL; CITY; ECOSYSTEM; GENE FLOW; GENETICS; GEOGRAPHY; PEROMYSCUS; POPULATION GENETICS; RIVER; SPATIAL ANALYSIS; STATISTICAL MODEL;

AGRICULTURE; ANIMALS; CITIES; ECOSYSTEM; GENE FLOW; GENETICS, POPULATION; GEOGRAPHY; LINEAR MODELS; PEROMYSCUS; RIVERS; SPATIAL ANALYSIS;

EID: 84905496994     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12847     Document Type: Article

References (83)

1. Adler GH, Tamarin RH, (1985) Dispersal of white-footed mice, Peromyscus leucopus, in low-density island and mainland populations. Canadian Field-Naturalist, 99, 331-336.
2. Anderson CS, Meikle DB, (2006) Annual changes in structural complexity of understory vegetation and relative abundance of Peromyscus leucopus in fragmented habitats. Acta Theriologica, 51, 43-51.
3. Anderson CS, Cady AB, Meikle DB, (2003) Effects of vegetation structure and edge habitat on the density and distribution of white-footed mice (Peromyscus leucopus) in small and large forest patches. Canadian Journal of Zoology, 81, 897-904.
4. Balkenhol N, Waits LP, Dezzani RJ, (2009) Statistical approaches in landscape genetics: an evaluation of methods for linking landscape and genetic data. Ecography, 32, 818-830.
5. Barko VA, Feldhamer GA, Nicholson MC, Davie DK, (2003) Urban habitat: a determinant of white-footed mouse (Peromyscus leucopus) abundance in Southern Illinois. Southeastern Naturalist, 2, 369-376.
6. Barry RE, Francq EN, (1980) Orientation to landmarks within the preferred habitat by Peromyscus leucopus. Journal of Mammalogy, 61, 292-303.
7. Bonte D, Lens L, Maelfait JP, Hoffmann M, Kuijken E, (2003) Patch quality and connectivity influence spatial dynamics in a dune wolfspider. Oecologia, 135, 227-233.
8. Byrd RH, Lu PH, Nocedal J, Zhu CY, (1995) A limited memory algorithm for bound constrained optimization. SIAM Journal on Scientific Computing, 16, 1190-1208.
9. Carr D, Bowman J, Wilson PJ, (2007) Density-dependent dispersal suggest a genetic measure of habitat suitability. Oikos, 116, 629-635.
10. Carter JL, Merritt JF, (1981) Evaluation of swimming ability as a means of island invasion by small mammals in coastal Virginia. Annals of the Carnegie Museum, 50, 31-46.
11. Clarke KR, Ainsworth M, (1993) A method of linking multivariate community structure to environmental variables. Marine Ecology Progress Series, 92, 205-210.
12. Crispo E, Bentzen P, Reznick DN, Kinnison MT, Hendry AP, (2006) The relative influence of natural selection and geography on gene flow in guppies. Molecular Ecology, 15, 49-62.
13. Cummings JR, Vessey SH, (1994) Agricultural influences on movement patterns of white-footed mice (Peromyscus leucopus). American Midland Naturalist, 132, 209-218.
14. Cushman SA, Landguth EL, (2010) Spurious correlations and inference in landscape genetics. Molecular Ecology, 19, 3592-3602.
15. Cushman SA, McKelvey KS, Hayden J, Schwartz MK, (2006) Gene flow in complex landscapes: testing multiple hypotheses with causal modeling. The American Naturalist, 168, 486-499.
16. R Development Core Team (2012) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
17. Dixon P, (2003) vegan, a package of r functions for community ecology. Journal of Vegetation Science, 14, 927-930.
18. Edalgo JA, McChesney HM, Love JP, Anderson JT, (2009) Microhabitat use by white-footed mice Peromyscus leucopus in forested and old-field habitats occupied by Morrow's honeysuckle Lonicera morrowii. Current Zoology, 55, 111-122.
19. Epps CW, Wasser SK, Keim JL, Mutayoba BM, Brashares JS, (2013) Quantifying past and present connectivity illuminates a rapidly changing landscape for the African elephant. Molecular Ecology, 22, 1574-1588.
20. ESRI (2012) arcgis Desktop: Release 10.1. Environmental Systems Research Institute, Redlands, California.
21. Goslee SC, Urban DL, (2007) The ecodist package for dissimilarity-based analysis of ecological data. Journal of Statistical Software, 22, 7, 1-19.
22. Greenberg CH, (2002) Response of white-footed mice (Peromyscus leucopus) to coarse woody debris and microsite use in southern Appalachian treefall gaps. Forest Ecology and Management, 164, 57-66.
23. Greene DF, Johnson EA, (1994) Estimating the mean annual seed production of trees. Ecology, 75, 642-647.
24. Guillot G, Rousset F, (2013) Dismantling the Mantel tests. Methods in Ecology and Evolution, 4, 336-344.
25. Hansen LP, Warnock JE, (1978) Response of two species of Peromyscus to vegetational succession on land strip-mined for coal. American Midland Naturalist, 100, 416-423.
26. Hijmans RJ, van Etten J, (2010) raster: package for reading, writing, and manipulating raster (grid) type geographic (spatial) data. Available from http://cran.r-project.org/web/packages/raster/index.html
27. Jaquiéry J, Broquet T, Hirzel A, Yearsley J, Perrin N, (2011) Inferring landscape effects on dispersal from genetic distances: how far can we go? Molecular Ecology, 20, 692-705.
28. Klee RV, Mahoney AC, Christopher CC, Barrett GW, (2004) Riverine peninsulas: an experimental approach to homing in white-footed mice (Peromyscus leucopus). The American Midland Naturalist, 151, 408-413.
29. Klein GP, Cameron GN, (2012) Effect of habitat gradients on space use by white-footed mice (Peromyscus leucopus). Journal of Mammalogy, 93, 706-715.
30. Koen EL, Garroway CJ, Wilson PJ, Bowman J, (2010) The effect of map boundary on estimates of landscape resistance to animal movement. PLoS One, 5, e11785.
31. Krohne DT, Burgin AB, (1987) Relative success of residents and immigrants in Peromyscus leucopus. Holarctic Ecology, 10, 196-200.
32. Krohne DT, Hoch GA, (1999) Demography of Peromyscus leucopus populations on habitat patches: the role of dispersal. Canadian Journal of Zoology, 77, 1247-1253.
33. Krohne DT, Dubbs BA, Baccus R, (1984) An analysis of dispersal in an unmanipulated population of Peromyscus leucopus. American Midland Naturalist, 112, 146-156.
34. Lane R, Piesman J, Burgdorfer W, (1991) Lyme borreliosis: relation of its causative agent to its vectors and hosts in North America and Europe. Annual Review of Entomology, 36, 587-609.
35. Ledevin R, Millien V, (2013) Congruent morphological and genetic differentiation as a signature of range expansion in a fragmented landscape. Ecology and Evolution, 3, 4172-4182.
36. Lee CR, Mitchell-Olds T, (2011) Quantifying effects of environmental and geographical factors on patterns of genetic differentiation. Molecular Ecology, 20, 4631-4642.
37. Legendre P, Fortin MJ, (2010) Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data. Molecular Ecology Resources, 10, 831-844.
38. Legendre P, Legendre L, (1998) Interpretation of ecological structures. Numerical Ecology, 2nd edn, pp. 481-574. Elsevier, Amsterdam.
39. Legendre P, Lapointe FJ, Casgrain P, (1994) Modeling brain evolution from behavior: a permutational regression approach. Evolution, 48, 1487-1499.
40. Lichstein JW, (2007) Multiple regression on distance matrices: a multivariate spatial analysis tool. Plant Ecology, 188, 117-131.
41. LoGiudice K, Duerr STK, Newhouse MJ, et al,. (2008) Impact of host community composition on Lyme disease risk. Ecology, 89, 2841-2849.
42. Manel S, Poncet BN, Legendre P, Gugerli F, Holderegger R, (2010) Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina. Molecular Ecology, 19, 3824-3835.
43. Mantel N, (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209.
44. M'Closkey RT, Fieldwick B, (1975) Ecological separation of sympatric rodents (Peromyscus and Microtus). Journal of Mammalogy, 56, 119-129.
45. McRae BH, (2006) Isolation by resistance. Evolution, 60, 1551-1561.
46. Meirmans PG, Hedrick PW, (2011) Assessing population structure: F(ST) and related measures. Molecular Ecology Resources, 11, 5-18.
47. Morris DW, Diffendorfer JE, (2004) Reciprocating dispersal by habitat-selecting white-footed mice. Oikos, 107, 549-558.
48. MRNF (2004) Système d'information écoforestière (SIEF)-Produits de diffusion-Spécifications techniques (ed. forestiers Ddi). Ministère des Ressources naturelles, de la Faune et des Parcs, Québec, QC.
49. Munshi-South J, (2012) Urban landscape genetics: canopy cover predicts gene flow between white-footed mouse (Peromyscus leucopus) populations in New York City. Molecular Ecology, 21, 1360-1378.
50. Munshi-South J, Kharchenko K, (2010) Rapid, pervasive genetic differentiation of urban white-footed mouse (Peromyscus leucopus) populations in New York City. Molecular Ecology, 19, 4242-4254.
51. Murcia C, (1995) Edge effects in fragmented forests: implications for conservation. Trends in Ecology and Evolution, 10, 58-62.
52. Murphy MA, Dezzani R, Pilliod DS, Storfer A, (2010) Landscape genetics of high mountain frog metapopulations. Molecular Ecology, 19, 3634-3649.
53. Myers P, Lundrigan BL, Hoffman SMG, Haraminac AP, Seto SH, (2009) Climate-induced changes in the small mammal communities of the Northern Great Lakes Region. Global Change Biology, 15, 1434-1454.
54. Niedziałkowska M, Fontaine MC, Jȩdrzejewska B, (2012) Factors shaping geneflow in red deer (Cervus elaphus) in seminatural landscapes of central Europe. Canadian Journal of Zoology, 90, 150-162.
55. Nupp TE, Swihart RK, (1996) Effect of forest patch area on population attributes of white-footed mice (Peromyscus leucopus) in fragmented landscapes. Canadian Journal of Zoology, 74, 467-472.
56. Ogden NH, Lindsay LR, Morshed M, Sockett PN, Artsob H, (2009) The emergence of Lyme disease in Canada. Canadian Medical Association Journal, 180, 1221-1224.
57. Ogden NH, Bouchard C, Kurtenbach K, et al,. (2010) Active and passive surveillance and phylogenetic analysis of Borrelia burgdorferi elucidate the process of Lyme disease risk emergence in Canada. Environmental Health Perspectives, 118, 909-914.
58. Palmer SCF, Coulon A, Travis JMJ, (2011) Introducing a 'stochastic movement simulator' for estimating habitat connectivity. Methods in Ecology and Evolution, 2, 258-268.
59. Pergams ORW, Lacy RC, (2008) Rapid morphological and genetic change in Chicago-area Peromyscus. Molecular Ecology, 17, 450-463.
60. Pulliam HR, (1988) Sources, sinks, and population regulation. The American Naturalist, 132, 652-661.
61. Richardson JL, (2012) Divergent landscape effects on population connectivity in two co-occurring amphibian species. Molecular Ecology, 21, 4437-4451.
62. Rogic A, Tessier N, Lapointe F-J, Legendre P, Millien V, (2013) Genetic structure of the white-footed mouse in the context of the emergence of Lyme disease in southern Quebec. Ecology and Evolution, 3, 2075-2088.
63. Roy-Dufresne E, Logan T, Simon JA, Chmura GL, Millien V, (2013) Poleward expansion of the white-footed mouse (Peromyscus leucopus) under climate change: implications for the spread of Lyme disease. PLoS One, 8, e80724.
64. Ruffer DG, (1961) Effect of flooding on a population of mice. Journal of Mammalogy, 42, 494-502.
65. Ruiz J, Domon G, (2005) Les paysages de l'agriculture en mutation. In: Paysages en perspective (eds, Poullaouec-Gonidec P, Domon G, Paquette S,), pp. 47-97. Presses de l'université de Montréal, Montreal.
66. Sackett LC, Etchberger LK, Mazzella MN, Lim DD, Martin AP, (2010) Characterization of 18 microsatellite loci for three species of prairie dogs. Molecular Ecology Resources, 10, 232-236.
67. Schmid-Holmes S, Drickamer LC, (2001) Impact of forest patch characteristics on small mammal communities: a multivariate approach. Biological Conservation, 99, 293-305.
68. Seamon JO, Adler GH, (1996) Population performance of generalist and specialist rodents along habitat gradients. Canadian Journal of Zoology, 74, 1130-1139.
69. Sheppe W, (1965) Dispersal by swimming in Peromyscus leucopus. Journal of Mammalogy, 46, 336-337.
70. Shirk A, Wallin D, Cushman S, Rice C, Warheit K, (2010) Inferring landscape effects on gene flow: a new model selection framework. Molecular Ecology, 19, 3603-3619.
71. Short Bull RA, Cushman SA, Mace R, et al,. (2011) Why replication is important in landscape genetics: American black bear in the Rocky Mountains. Molecular Ecology, 20, 1092-1107.
72. Simon JA, Marrotte RR, Desrosiers N, et al,. (2014) Climate change and habitat fragmentation drive the occurrence of B. burgdorferi, the agent of Lyme disease, at the northern limit of its distribution. Evolutionary Applications. doi: 10.1111/eva.12165.
73. Spear SF, Balkenhol N, Fortin MJ, McRae BH, Scribner K, (2010) Use of resistance surfaces for landscape genetic studies: considerations for parameterization and analysis. Molecular Ecology, 19, 3576-3591.
74. Taylor Z, Hoffman S, (2013) Landscape models for nuclear genetic diversity and genetic structure in white-footed mice (Peromyscus leucopus). Heredity, 112, 588-595.
75. Teeters R, (1945) Swimming ability of a wood mouse. Journal of Mammalogy, 26, 197.
76. Van Strien M, Keller D, Holderegger R, (2012) A new analytical approach to landscape genetic modeling: least-cost transect analysis and linear mixed models. Molecular Ecology, 21, 4010-4023.
77. Wagner HH, Fortin M-J, (2013) A conceptual framework for the spatial analysis of landscape genetic data. Conservation Genetics, 14, 253-261.
78. Wampach J-P, (1988) Deux siècles de croissance agricole au Québec, 1760-1985. Recherches Sociographiques, 29, 181-199.
79. Wang IJ, Glor RE, Losos JB, (2013) Quantifying the roles of ecology and geography in spatial genetic divergence. Ecology Letters, 16, 175-182.
80. Wegner J, Merriam G, (1990) Use of spatial elements in a farmland mosaic by a woodland rodent. Biological Conservation, 54, 263-276.
81. ST. Molecular Ecology, 20, 1083-1091.
82. Wolff JO, Hurlbutt B, (1982) Day refuges of Peromyscus leucopus and Peromyscus maniculatus. Journal of Mammalogy, 63, 666-668.
83. Zielinski WJ, Schlexer FV, Parks SA, Pilgrim KL, Schwartz MK, (2013) Small geographic range but not panmictic: how forests structure the endangered Point Arena mountain beaver (Aplodontia rufa nigra). Conservation Genetics, 14, 369-383.