Erratum: Functional genomics platform for pooled screening and generation of mammalian genetic interaction maps (Nature Protocols (2014) 9 (1825-1847) DOI: 10.1038/nprot.2014.103);Functional genomics platform for pooled screening and generation of mammalian genetic interaction maps

Nature Protocols

Volumn 9, Issue 8, 2014, Pages 1825-1847

  Kampmann, Martin ^a,b   Bassik, Michael C ^a,b   Weissman, Jonathan S ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SHORT HAIRPIN RNA; RICIN; SMALL INTERFERING RNA;

ARTICLE; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; CONTROLLED STUDY; FUNCTIONAL GENOMICS; GENE INTERACTION; GENE LIBRARY; GENE MAPPING; GENE POOL; GENETIC ANALYSIS; MAMMAL CELL; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; RNA INTERFERENCE; SEQUENCE ANALYSIS; VALIDATION PROCESS; ANIMAL; CHEMISTRY; GENE REGULATORY NETWORK; GENETICS; GENOMICS; HEK293 CELL LINE; HUMAN; K562 CELL LINE; MAMMAL; PROCEDURES; SOFTWARE; GENE IDENTIFICATION; GENETIC INTERACTION MAP; GENETIC SCREENING;

ANIMALS; GENE LIBRARY; GENE REGULATORY NETWORKS; GENOMICS; HEK293 CELLS; HUMANS; K562 CELLS; MAMMALS; RICIN; RNA, SMALL INTERFERING; SOFTWARE;

EID: 84905043721     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot0415-644d     Document Type: Erratum

References (29)

1. Bandyopadhyay, S. et al. Rewiring of genetic networks in response to DNA damage. Science 330, 1385-1389 (2010
2. Frost, A. et al. Functional repurposing revealed by comparing S. pombe and S. cerevisiae genetic interactions. Cell 149, 1339-1352 (2012
3. Jonikas, M.C. et al. Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Science 323, 1693-1697 (2009
4. Roguev, A. et al. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Science 322, 405-410 (2008
5. Schuldiner, M. et al. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell 123, 507-519 (2005
6. Tong, A.H. et al. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294, 2364-2368 (2001
7. Tong, A.H. et al. Global mapping of the yeast genetic interaction network. Science 303, 808-813 (2004
8. Collins, S.R. et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature 446, 806-810 (2007
9. Kampmann, M., Bassik, M.C. & Weissman, J.S. Integrated platform for genome-wide screening and construction of high-density genetic interaction maps in mammalian cells. Proc. Natl. Acad. Sci. USA 110, E2317-E2326 (2013
10. Bassik, M.C. et al. A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility. Cell 152, 909-922 (2013
11. Laufer, C., Fischer, B., Billmann, M., Huber, W. & Boutros, M. Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping. Nat. Methods 10, 427-431 (2013
12. Roguev, A. et al. Quantitative genetic-interaction mapping in mammalian cells. Nat. Methods 10, 432-437 (2013
13. Bassik, M.C. et al. Rapid creation and quantitative monitoring of high-coverage shRNA libraries. Nat. Methods 6, 443-445 (2009
14. Kaelin, W.G. Jr. Use and abuse of RNAi to study mammalian gene function. Science 337, 421-422 (2012
15. Cheung, H.W. et al. Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer. Proc. Natl. Acad. Sci. USA 108, 12372-12377 (2011
16. Luo, B. et al. Highly parallel identification of essential genes in cancer cells. Proc. Natl. Acad. Sci. USA 105, 20380-20385 (2008
17. Luo, J. et al. A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. Cell 137, 835-848 (2009
18. Zuber, J. et al. Toolkit for evaluating genes required for proliferation and survival using tetracycline-regulated RNAi. Nat. Biotechnol. 29, 79-83 (2011
19. Qi, L.S. et al. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152, 1173-1183 (2013
20. Gilbert, L.A. et al. CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell 154, 442-451 (2013
21. Wang, T., Wei, J.J., Sabatini, D.M. & Lander, E.S. Genetic screens in human cells using the CRISPR-Cas9 system. Science 343, 80-84 (2013
22. Shalem, O. et al. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343, 84-87 (2013
23. Meerbrey, K.L. et al. The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo. Proc. Natl. Acad. Sci. USA 108, 3665-3670 (2011
24. Silva, J.M. et al. Profiling essential genes in human mammary cells by multiplex RNAi screening. Science 319, 617-620 (2008
25. Dull, T. et al. A third-generation lentivirus vector with a conditional packaging system. J. Virol. 72, 8463-8471 (1998
26. Naldini, L. et al. In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science 272, 263-267 (1996
27. Saldanha, A.J. Java TreeView: Extensible visualization of microarray data. Bioinformatics 20, 3246-3248 (2004
28. Matheny, C.J. et al. Next-generation NAMPT inhibitors identified by sequential high-Throughput phenotypic chemical and functional genomic screens. Chem. Biol. 20, 1352-1363 (2013
29. Eisen, M.B., Spellman, P.T., Brown, P.O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95, 14863-14868 (1998