-
1
-
-
34249299791
-
The complex language of chromatin regulation during transcription
-
Berger, S. L. (2007). The complex language of chromatin regulation during transcription. Nature447: 407-412.
-
(2007)
Nature
, vol.447
, pp. 407-412
-
-
Berger, S.L.1
-
2
-
-
52349089796
-
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
-
Bernatavichute, Y. V., Zhang, X., Cokus, S., Pellegrini, M., and Jacobsen, S. E. (2008). Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoSONE3: e3156.
-
(2008)
PLoSONE
, vol.3
-
-
Bernatavichute, Y.V.1
Zhang, X.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
3
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E., et al. (2006). A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell125: 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
4
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus, S. J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C. D., Pradhan, S., Nelson, S. F., Pellegrini, M., and Jacobsen, S. E. (2008). Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452: 215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
5
-
-
79952359976
-
Genome-wide mapping of Arabidopsis thalianaorigins of DNA replication and their associated epigenetic marks
-
Costas, C., de la Paz Sanchez, M., Stroud, H., Yu, Y., Oliveros, J. C., Feng, S., Benguria, A., López-Vidriero, I., Zhang, X., Solano, R., Jacobsen, S. E., and Gutierrez, C. (2011). Genome-wide mapping of Arabidopsis thalianaorigins of DNA replication and their associated epigenetic marks. Nat. Struct. Mol. Biol. 18: 395-400.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 395-400
-
-
Costas, C.1
de la Paz Sanchez, M.2
Stroud, H.3
Yu, Y.4
Oliveros, J.C.5
Feng, S.6
Benguria, A.7
López-Vidriero, I.8
Zhang, X.9
Solano, R.10
Jacobsen, S.E.11
Gutierrez, C.12
-
6
-
-
77955967051
-
A simple method for gene expression and chromatin profiling of individual cell types within a tissue
-
Deal, R. B., and Henikoff, S. (2010). A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Dev. Cell18: 1030-1040.
-
(2010)
Dev. Cell
, vol.18
, pp. 1030-1040
-
-
Deal, R.B.1
Henikoff, S.2
-
7
-
-
79955112442
-
Histone variants and modifications in plant gene regulation
-
Deal, R. B., and Henikoff, S. (2011). Histone variants and modifications in plant gene regulation. Curr. Opin. Plant Biol. 14: 116-122.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 116-122
-
-
Deal, R.B.1
Henikoff, S.2
-
8
-
-
84871139937
-
Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements
-
Dong, X., Reimer, J., Göbel, U., Engelhorn, J., He, F., Schoof, H., and Turck, F. (2012). Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements. Genome Biol. 13: R117.
-
(2012)
Genome Biol.
, vol.13
-
-
Dong, X.1
Reimer, J.2
Göbel, U.3
Engelhorn, J.4
He, F.5
Schoof, H.6
Turck, F.7
-
9
-
-
79957564427
-
Nucleosomes in the neighborhood: New roles for chromatin modifications in replication origin control
-
Dorn, E. S., and Cook, J. G. (2011). Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control. Epigenetics6: 552-559.
-
(2011)
Epigenetics
, vol.6
, pp. 552-559
-
-
Dorn, E.S.1
Cook, J.G.2
-
10
-
-
84880064679
-
Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types
-
Ernst, J., and Kellis, M. (2013). Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types. Genome Res. 23: 1142-1154.
-
(2013)
Genome Res.
, vol.23
, pp. 1142-1154
-
-
Ernst, J.1
Kellis, M.2
-
11
-
-
79955124012
-
Epigenetic modifications in plants: An evolutionary perspective
-
Feng, S., and Jacobsen, S. E. (2011). Epigenetic modifications in plants: an evolutionary perspective. Curr. Opin. Plant Biol. 14: 179-186.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 179-186
-
-
Feng, S.1
Jacobsen, S.E.2
-
12
-
-
77957776228
-
Systematic protein location mapping revealsfive principal chromatin types in Drosophila cells
-
Filion, G. J., van Bemmel, J. G., Braunschweig, U., Talhout, W., Kind, J., Ward, L. D., Brugman, W., deCastro, I. J., Kerkhoven, R. M., Bussemaker, H. J., and van Steensel, B. (2010). Systematic protein location mapping revealsfive principal chromatin types in Drosophila cells. Cell143: 212-224.
-
(2010)
Cell
, vol.143
, pp. 212-224
-
-
Filion, G.J.1
van Bemmel, J.G.2
Braunschweig, U.3
Talhout, W.4
Kind, J.5
Ward, L.D.6
Brugman, W.7
deCastro, I.J.8
Kerkhoven, R.M.9
Bussemaker, H.J.10
van Steensel, B.11
-
13
-
-
84886298616
-
Developmental roles of histone H3 variants and their chaperones
-
Filipescu, D., Szenker, E., and Almouzni, G. (2013). Developmental roles of histone H3 variants and their chaperones. Trends Genet. 29: 630-640.
-
(2013)
Trends Genet.
, vol.29
, pp. 630-640
-
-
Filipescu, D.1
Szenker, E.2
Almouzni, G.3
-
14
-
-
84887932087
-
Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture
-
Grob, S., Schmid, M. W., Luedtke, N. W., Wicker, T., and Grossniklaus, U. (2013). Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture. Genome Biol. 14: R129.
-
(2013)
Genome Biol.
, vol.14
-
-
Grob, S.1
Schmid, M.W.2
Luedtke, N.W.3
Wicker, T.4
Grossniklaus, U.5
-
15
-
-
80052805267
-
Histone modification: Cause or cog?
-
Henikoff, S., and Shilatifard, A. (2011). Histone modification: cause or cog? Trends Genet. 27: 389-396.
-
(2011)
Trends Genet.
, vol.27
, pp. 389-396
-
-
Henikoff, S.1
Shilatifard, A.2
-
16
-
-
77955925952
-
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases
-
Jacob, Y., Stroud, H., Leblanc, C., Feng, S., Zhuo, L., Caro, E., Hassel, C., Gutierrez, C., Michaels, S. D., and Jacobsen, S. E. (2010). Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature466: 987-991.
-
(2010)
Nature
, vol.466
, pp. 987-991
-
-
Jacob, Y.1
Stroud, H.2
Leblanc, C.3
Feng, S.4
Zhuo, L.5
Caro, E.6
Hassel, C.7
Gutierrez, C.8
Michaels, S.D.9
Jacobsen, S.E.10
-
17
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
Kharchenko, P. V., et al. (2011). Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature471: 480-485.
-
(2011)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
-
18
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. (2007). Chromatin modifications and their function. Cell128: 693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
19
-
-
84866922424
-
Surveillance of 39noncoding transcripts requires FIERY and XRN3
-
Kurihara, Y., Schmitz, R. J., Nery, J. R., Schultz, M. D., OkuboKurihara, E., and Ecker, J. R. (2012). Surveillance of 39noncoding transcripts requires FIERY and XRN3. G3 (Bethesda) 2: 487-498.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 487-498
-
-
Kurihara, Y.1
Schmitz, R.J.2
Nery, J.R.3
Schultz, M.D.4
OkuboKurihara, E.5
Ecker, J.R.6
-
20
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law, J. A., and Jacobsen, S. E. (2010). Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11: 204-220.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
21
-
-
77956153243
-
The language of histone crosstalk
-
Lee, J. S., Smith, E., and Shilatifard, A. (2010). The language of histone crosstalk. Cell142: 682-685.
-
(2010)
Cell
, vol.142
, pp. 682-685
-
-
Lee, J.S.1
Smith, E.2
Shilatifard, A.3
-
22
-
-
70349739736
-
The Integrated Genome Browser: Free software for distribution and exploration of genome-scale datasets
-
Nicol, J. W., Helt, G. A., Blanchard, S. G., Jr., Raja, A., and Loraine, A. E. (2009). The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics25: 2730-2731.
-
(2009)
Bioinformatics
, vol.25
, pp. 2730-2731
-
-
Nicol, J.W.1
Helt, G.A.2
Blanchard Jr., S.G.3
Raja, A.4
Loraine, A.E.5
-
23
-
-
33750488431
-
The genomic landscape of histone modifications in human T cells
-
Roh, T. Y., Cuddapah, S., Cui, K., andZhao, K. (2006). The genomic landscape of histone modifications in human T cells. Proc. Natl. Acad. Sci. USA103: 15782-15787.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 15782-15787
-
-
Roh, T.Y.1
Cuddapah, S.2
Cui, K.3
Zhao, K.4
-
24
-
-
79956066320
-
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
-
Roudier, F., et al. (2011). Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J. 30: 1928-1938.
-
(2011)
EMBO J.
, vol.30
, pp. 1928-1938
-
-
Roudier, F.1
-
25
-
-
84871796810
-
Distinct modes of DNA accessibility in plant chromatin
-
Shu, H., Wildhaber, T., Siretskiy, A., Gruissem, W., andHennig, L. (2012). Distinct modes of DNA accessibility in plant chromatin. Nat. Commun. 3: 1281.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1281
-
-
Shu, H.1
Wildhaber, T.2
Siretskiy, A.3
Gruissem, W.4
Hennig, L.5
-
26
-
-
84878282462
-
Histone variants in pluripotency and disease
-
Skene, P. J., and Henikoff, S. (2013). Histone variants in pluripotency and disease. Development140: 2513-2524.
-
(2013)
Development
, vol.140
, pp. 2513-2524
-
-
Skene, P.J.1
Henikoff, S.2
-
27
-
-
84859467840
-
Genome-wide analysis of histone H3. 1 and H3. 3 variants inArabidopsis thaliana
-
Stroud, H., Otero, S., Desvoyes, B., Ramírez-Parra, E., Jacobsen, S. E., and Gutierrez, C. (2012). Genome-wide analysis of histone H3. 1 and H3. 3 variants inArabidopsis thaliana. Proc. Natl. Acad. Sci. USA109: 5370-5375.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5370-5375
-
-
Stroud, H.1
Otero, S.2
Desvoyes, B.3
Ramírez-Parra, E.4
Jacobsen, S.E.5
Gutierrez, C.6
-
28
-
-
67650091251
-
Genome-wide analysis of mono-, di-and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
-
Zhang, X., Bernatavichute, Y. V., Cokus, S., Pellegrini, M., and Jacobsen, S. E. (2009). Genome-wide analysis of mono-, di-and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 10: R62.
-
(2009)
Genome Biol.
, vol.10
-
-
Zhang, X.1
Bernatavichute, Y.V.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
29
-
-
34249068213
-
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
-
Zhang, X., Clarenz, O., Cokus, S., Bernatavichute, Y. V., Pellegrini, M., Goodrich, J., and Jacobsen, S. E. (2007). Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 5: e129.
-
(2007)
PLoS Biol.
, vol.5
-
-
Zhang, X.1
Clarenz, O.2
Cokus, S.3
Bernatavichute, Y.V.4
Pellegrini, M.5
Goodrich, J.6
Jacobsen, S.E.7
-
30
-
-
55549141877
-
Histone H2A. Z and DNA methylation are mutually antagonistic chromatin marks
-
Zilberman, D., Coleman-Derr, D., Ballinger, T., and Henikoff, S. (2008). Histone H2A. Z and DNA methylation are mutually antagonistic chromatin marks. Nature456: 125-129.
-
(2008)
Nature
, vol.456
, pp. 125-129
-
-
Zilberman, D.1
Coleman-Derr, D.2
Ballinger, T.3
Henikoff, S.4
|