Epigenetic control of plant senescence and linked processes

Journal of Experimental Botany

Volumn 65, Issue 14, 2014, Pages 3875-3887

  Ay, Nicole ^a   Janack, Bianka ^a   Humbeck, Klaus ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

Arabidopsis; ATP dependent chromatin remodelling; chromatin alterations; DNA methylation; leaf senescence,histone modifications; stress

Indexed keywords

CHROMATIN;

CHROMATIN; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETIC EPIGENESIS; GENETICS; METABOLISM; PHYSIOLOGICAL STRESS; PLANT DEVELOPMENT;

CHROMATIN; EPIGENESIS, GENETIC; GENE EXPRESSION REGULATION, PLANT; GENE REGULATORY NETWORKS; PLANT DEVELOPMENT; STRESS, PHYSIOLOGICAL;

EID: 84905002813     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/eru132     Document Type: Review

References (61)

1. Abu-Shakra SS, Phillips DA, Huffaker RC. 1978. Nitrogen fixation and delayed leaf senescence in soybeans. Science 199, 973-975.
2. Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J. 2004. BioMercator: Integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20, 2324-2326.
3. Arends D, Prins P, Jansen RC, Broman KW. 2010. R/qtl: Highthroughput multiple QTL mapping. Bioinformatics 26, 2990-2992.
4. Ay N, Irmler K, Fischer A, Uhlemann R, Reuter G, Humbeck K. 2009. Epigenetic programming via histone methylation at WRKY53 controls leaf senescence in Arabidopsis thaliana. The Plant Journal 58, 333-346.
5. Balazadeh S, Parlitz S, Mueller-Roeber B, Meyer RC. 2008. Natural developmental variations in leaf and plant senescence in Arabidopsis thaliana. Plant Biology 10, 136-147.
6. Balazadeh S, Siddiqui H, Allu AD, Matallana-Ramirez LP, Caldana C, Mehrnia M, Zanor MI, Kohler B, Mueller-Roeber B. 2010. A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. The Plant Journal 62, 250-264.
7. Blanco A, Mangini G, Giancaspro A et al. 2012. Relationships between grain protein content and grain yield components through quantitative trait locus analyses in a recombinant inbred line population derived from two elite durum wheat cultivars. Molecular Breeding 30, 79-92.
8. Borrell AK, Hammer GL, Douglas ACL. 2000. Does maintaining green leaf area in Sorghum improve yield under drought I. Leaf growth and senescence. Crop Science 40, 1026-1037.
9. Caicedo AL, Richards C, Ehrenreich IM, Purugganan MD. 2009. Complex rearrangements lead to novel chimeric gene fusion polymorphisms at the Arabidopsis thaliana MAF2-5 flowering time gene cluster. Molecular Biology and Evolution 26, 699-711.
10. Chardon F, Virlon B, Moreau L, Falque M, Joets J, Decousset L, Murigneux A, Charcosset A. 2004. Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome. Genetics 168, 2169-2185.
11. Churchill GA, Doerge RW. 1994. Empirical threshold values for quantitative trait mapping. Genetics 138, 963-971.
12. Ciampitti IA, Vyn TJ. 2013. Grain nitrogen source changes over time in maize: A review. Crop Science 53, 366-377.
13. Diaz C, Lemaitre T, Christ A, Azzopardi M, Kato Y, Sato F, Morot-Gaudry J-F, Le Dily F, Masclaux-Daubresse C. 2008. Nitrogen recycling and remobilization are differentially controlled by leaf senescence and development stage in Arabidopsis under low nitrogen nutrition. Plant Physiology 147, 1437-1449.
14. Diaz C, Purdy S, Christ A, Morot-Gaudry JF, Wingler A, Masclaux-Daubresse C. 2005. Characterization of markers to determine the extent and variability of leaf senescence in Arabidopsis. A metabolic profiling approach. Plant Physiology 138, 898-908.
15. Diaz C, Saliba-Colombani V, Loudet O, Belluomo P, Moreau L, Daniel-Vedele F, Morot-Gaudry J-F, Masclaux-Daubresse C. 2006. Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana. Plant and Cell Physiology 47, 74-83.
16. Dignat G, Welcker C, Sawkins M, Ribaut JM, Tardieu F. 2013. The growths of leaves, shoots, roots and reproductive organs partly share their genetic control in maize plants. Plant, Cell & Environment 36, 1105-1119.
17. El-Assal SE, Alonso-Blanco C, Peeters AJ, Raz V, Koornneef M. 2001. A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2. Nature Genetics 29, 435-440.
18. El-Lithy ME, Bentsink L, Hanhart CJ et al. 2006. New Arabidopsis recombinant inbred line populations genotyped using SNPWave and their use for mapping flowering-time quantitative trait loci. Genetics 172, 1867-1876.
19. El-Lithy ME, Clerkx EJM, Ruys GJ, Koornneef M, Vreugdenhil D. 2004. Quantitative trait locus analysis of growth-related traits in a new Arabidopsis recombinant inbred population. Plant Physiology 135, 444-458.
20. Fischer AM. 2012. The complex regulation of senescence. Critical Reviews in Plant Sciences 31, 124-147.
21. Fournier-Level A, Wilczek AM, Cooper MD et al. 2013. Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana. Molecular ecology 22, 3552-3566.
22. Gan S, Amasino RM. 1997. Making sense of senescence (molecular genetic regulation and manipulation of leaf senescence). Plant Physiology 113, 313-319.
23. Gepstein S, Sabehi G, Carp M-J, Hajouj T, Nesher MFO, Yariv I, Dor C, Bassani M. 2003. Large-scale identification of leaf senescenceassociated genes. The Plant Journal 36, 629-642.
24. Grbic B, Bleecker AB. 1996. An altered body plan is conferred on Arabidopsis plants carrying dominant alleles of two genes. Development 122, 2395-403.
25. Gregersen PL, Culetic A, Boschian L, Krupinska K. 2013. Plant senescence and crop productivity. Plant Molecular Biology 82, 603-622.
26. Guo H, Yang H, Mockler TC, Lin C. 1998. Regulation of flowering time by Arabidopsis photoreceptors. Science 279, 1360-1363.
27. Guo Y, Gan S. 2006. AtNAP, a NAC family transcription factor, has an important role in leaf senescence. The Plant Journal 46, 601-612.
28. Hobbs DH, Flintham JE, Hills MJ. 2004. Genetic control of storage oil synthesis in seeds of Arabidopsis. Plant Physiology 136, 3341-3349.
29. Huang X, Ding J, Effgen S, Turck F, Koornneef M. 2013. Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis. New Phytologist 199, 843-857.
30. Hunkovà E, Živák M, Olšovská K. 2011. Leaf area duration of oilseed rape (Brassica napus subsp. napus) varieties and hybrids and its relationship to selected growth and productivity parameters. Journal of Central European Agriculture 12, 1-15.
31. Ismail AM, Hall AE, Ehlers JD. 2000. Delayed-leaf-senescence and heat-tolerance traits mainly are independently expressed in cowpea. Crop Science 40, 1049-1055.
32. Kim JH, Woo HR, Kim J, Lim PO, Lee IC, Choi SH, Hwang D, Nam HG. 2009. Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science 323, 1053-1057.
33. Koyama T, Nii H, Mitsuda N, Ohta M, Kitajima S, Ohme-Takagi M, Sato F. 2013. A regulatory cascade involving class II ETHYLENE RESPONSE FACTOR transcriptional repressors operates in the progression of leaf senescence. Plant Physiology 162, 991-1005.
34. Lan TH, Paterson AH. 2001. Comparative mapping of QTLs determining the plant size of Brassica oleracea. Theoretical and Applied Genetics 103, 383-397.
35. Lim PO, Kim Y, Breeze E et al. 2007. Overexpression of a chromatin architecture-controlling AT-hook protein extends leaf longevity and increases the post-harvest storage life of plants. The Plant Journal 52, 1140-1153.
36. Loudet O, Chaillou S, Merigout P, Talbotec J, Daniel-Vedele F. 2003. Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiology 131, 345-358.
37. Masclaux-Daubresse C, Chardon F. 2011. Exploring nitrogen remobilization for seed filling using natural variation in Arabidopsis thaliana. Journal of Experimental Botany 62, 2131-2142.
38. McKhann IH, Camilleri C, Bérard A, Bataillon T, David LJ, Reboud X, Le Corre V, Caloustian C, Gut GI, Brunel D. 2004. Nested core collections maximizing genetic diversity in Arabidopsis thaliana. The Plant Journal 38, 193-202.
39. Miao Y, Laun T, Zimmermann P, Zentgraf U. 2004. Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis. Plant Molecular Biology 55, 853-867.
40. Miao Y, Smykowski A, Zentgraf U. 2008. A novel upstream regulator of WRKY53 transcription during leaf senescence in Arabidopsis thaliana. Plant Biology 10, 110-120.
41. Nakajima S, Ito H, Tanaka R, Tanaka A. 2012. Chlorophyll b reductase plays an essential role in maturation and storability of Arabidopsis seeds. Plant Physiology 160, 261-273.
42. O'Neill CM, Morgan C, Hattori C et al. 2012. Towards the genetic architecture of seed lipid biosynthesis and accumulation in Arabidopsis thaliana. Heredity 108, 115-123.
43. Olsen AN, Ernst HA, Leggio LL, Skriver K. 2005. NAC transcription factors: Structurally distinct, functionally diverse. Trends in Plant Science 10, 79-87.
44. Oury F-X, Godin C. 2007. Yield and grain protein concentration in bread wheat: How to use the negative relationship between the two characters to identify favourable genotypes Euphytica 157, 45-57.
45. Ren G, An K, Liao Y, Zhou X, Cao Y, Zhao H, Ge X, Kuai B. 2007. Identification of a novel chloroplast protein AtNYE1 regulating chlorophyll degradation during leaf senescence in Arabidopsis. Plant Physiology 144, 1429-41.
46. Rosloski SM, Jali SS, Balasubramanian S, Weigel D, Grbic V. 2010. Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array. Genetics 186, 263-76.
47. Schippers JHM, Jing H-C, Hille J, Dijkwel PP. 2007. Developmental and hormonal control of leaf senescence. In: Gan, S, ed. Senescence Processes in Plants. Oxford: Blackwell Publishing Ltd, 145-170.
48. Shrawat AK, Carroll RT, DePauw M, Taylor GJ, Good AG. 2008. Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression of alanine aminotransferase. Plant Biotechnology Journal 6, 722-732.
49. Simmonds NW. 1995. The relation between yield and protein in cereal grain. Journal of the Science of Food and Agriculture 67, 309-315.
50. Simon M, Loudet O, Durand S, Bérard A, Brunel D, Sennesal F-X, Durand-Tardif M, Pelletier G, Camilleri C. 2008. Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers. Genetics 178, 2253-2264.
51. Sosnowski O, Charcosset A, Joets J. 2012. BioMercator V3: An upgrade of genetic map compilation and quantitative trait loci metaanalysis algorithms. Bioinformatics 28, 2082-2083.
52. Thomas H, Stoddart JL. 1980. Leaf senescence. Annual Review of Plant Physiology 31, 83-111.
53. Tian L, Chen ZJ. 2001. Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. Proceedings of the National Academy of Sciences, USA 98, 200-205.
54. Uauy C, Distelfeld A, Fahima T, Blechl A, Dubcovsky J. 2006. A NAC gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science 314, 1298-1301.
55. Ungerer MC, Halldorsdottir SS, Modliszewski JL, Mackay TFC, Purugganan MD. 2002. Quantitative trait loci for inflorescence development in Arabidopsis thaliana. Genetics 160, 1133-1151.
56. Verslues PE, Kim Y-S, Zhu J-K. 2007. Altered ABA, proline and hydrogen peroxide in an Arabidopsis glutamate:glyoxylate aminotransferase mutant. Plant Molecular Biology 64, 205-217.
57. Vlad D, Rappaport F, Simon M, Loudet O. 2010. Gene transposition causing natural variation for growth in Arabidopsis thaliana. PLoS Genetics 6, e1000945.
58. Wingler A, Purdy SJ, Edwards S-A, Chardon F, Masclaux-Daubresse C. 2010. QTL analysis for sugar-regulated leaf senescence supports flowering-dependent and-independent senescence pathways. New Phytologist 185, 420-433.
59. Zavaleta-Mancera HA, Thomas BJ, Thomas H, Scott IM. 1999. Regreening of senescent Nicotiana leaves: II. Redifferentiation of plastids. Journal of Experimental Botany 50, 1683-1689.
60. Zentgraf U, Laun T, Miao Y. 2010. The complex regulation of WRKY53 during leaf senescence of Arabidopsis thaliana. European Journal of Cell Biology 89, 133-137.
61. Zhang K, Gan S-S. 2012. An abscisicacid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves. Plant Physiology 158, 961-969.