메뉴 건너뛰기




Volumn 42, Issue W1, 2014, Pages

MrsFAST-Ultra: A compact, SNP-aware mapper for high performance sequencing applications

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CALCULATION; DATA ANALYSIS SOFTWARE; DATA EXTRACTION; GENE LOCATION; GENE LOCUS; GENE MAPPING; GENETIC DATABASE; HIGH THROUGHPUT SEQUENCING; HUMAN GENOME; PRIORITY JOURNAL; REFERENCE DATABASE; SENSITIVITY ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84904813708     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku370     Document Type: Article
Times cited : (56)

References (38)
  • 2
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium (2005) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
    • (2005) Nature , vol.467 , pp. 1061-1073
  • 3
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium (2005) An integrated map of genetic variation from 1,092 human genomes. Nature, 491, 56-65.
    • (2005) Nature , vol.491 , pp. 56-65
  • 7
    • 0034506014 scopus 로고    scopus 로고
    • Opportunistic data structures with applications
    • Ferragina,P. and Manzini,G. (2005) Opportunistic data structures with applications. In: FOCS, pp. 390-398.
    • (2005) FOCS , pp. 390-398
    • Ferragina, P.1    Manzini, G.2
  • 8
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2005) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2005) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 9
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead,B., Trapnell,C., Pop,M. and Salzberg,S.L. (2005) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2005) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 10
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead,B. and Salzberg,S.L. (2005) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
    • (2005) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 15
    • 79960122547 scopus 로고    scopus 로고
    • Sensitive and fast mapping of di-base encoded reads
    • Hormozdiari,F., Hach,F., Sahinalp,S.C. and Alkan,C. (2005) Sensitive and fast mapping of di-base encoded reads. Bioinformatics, 27, 1915-1921.
    • (2005) Bioinformatics , vol.27 , pp. 1915-1921
    • Hormozdiari, F.1    Hach, F.2    Sahinalp, S.C.3    Alkan, C.4
  • 17
    • 84870471176 scopus 로고    scopus 로고
    • RazerS 3: Faster, fully sensitive read mapping
    • Weese,D., Holtgrewe,M. and Reinert,K. (2005) RazerS 3: faster, fully sensitive read mapping. Bioinformatics, 28, 2592-2599.
    • (2005) Bioinformatics , vol.28 , pp. 2592-2599
    • Weese, D.1    Holtgrewe, M.2    Reinert, K.3
  • 19
  • 21
    • 84873312972 scopus 로고    scopus 로고
    • SRmapper: A fast and sensitive genome-hashing alignment tool
    • Gontarz,P.M., Berger,J. and Wong,C.F. (2013) SRmapper: a fast and sensitive genome-hashing alignment tool. Bioinformatics, 29, 316-321.
    • (2013) Bioinformatics , vol.29 , pp. 316-321
    • Gontarz, P.M.1    Berger, J.2    Wong, C.F.3
  • 22
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • Wu,T.D. and Nacu,S. (2005) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics, 26, 873-881.
    • (2005) Bioinformatics , vol.26 , pp. 873-881
    • Wu, T.D.1    Nacu, S.2
  • 23
    • 84876548372 scopus 로고    scopus 로고
    • Fast and accurate read mapping with approximate seeds and multiple backtracking
    • Siragusa,E.,Weese,D. and Reinert,K. (2005) Fast and accurate read mapping with approximate seeds and multiple backtracking. Nucleic Acids Res., 41, e78.
    • (2005) Nucleic Acids Res. , vol.41
    • Siragusa, E.1    Weese, D.2    Reinert, K.3
  • 24
    • 84870837088 scopus 로고    scopus 로고
    • The GEM mapper: Fast, accurate and versatile alignment by filtration
    • Marco-Sola,S., Sammeth,M., Guigo,R. and Ribeca,P. (2005) The GEM mapper: fast, accurate and versatile alignment by filtration. Nat. Methods, 9, 1185-1188.
    • (2005) Nat. Methods , vol.9 , pp. 1185-1188
    • Marco-Sola, S.1    Sammeth, M.2    Guigo, R.3    Ribeca, P.4
  • 25
    • 80053978849 scopus 로고    scopus 로고
    • Comparative analysis of algorithms for next-generation sequencing read alignment
    • Ruffalo,M., LaFramboise,T. and Koyutrk,M. (2005) Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics, 27, 2790-2796.
    • (2005) Bioinformatics , vol.27 , pp. 2790-2796
    • Ruffalo, M.1    Laframboise, T.2    Koyutrk, M.3
  • 26
    • 84870822864 scopus 로고    scopus 로고
    • Tools for mapping high-throughput sequencing data
    • Fonseca,N.A., Rung,J., Brazma,A. and Marioni,J.C. (2005) Tools for mapping high-throughput sequencing data. Bioinformatics, 28, 3169-3177.
    • (2005) Bioinformatics , vol.28 , pp. 3169-3177
    • Fonseca, N.A.1    Rung, J.2    Brazma, A.3    Marioni, J.C.4
  • 27
    • 67650064593 scopus 로고    scopus 로고
    • Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
    • Hormozdiari,F., Alkan,C., Eichler,E.E. and Sahinalp,S.C. (2009) Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome Res., 19, 1270-1278.
    • (2009) Genome Res. , vol.19 , pp. 1270-1278
    • Hormozdiari, F.1    Alkan, C.2    Eichler, E.E.3    Sahinalp, S.C.4
  • 29
    • 84874746879 scopus 로고    scopus 로고
    • CNVeM: Copy number variation detection using uncertainty of read mapping
    • Wang,Z., Hormozdiari,F., Yang,W.-Y., Halperin,E. and Eskin,E. (2005) CNVeM: copy number variation detection using uncertainty of read mapping. J. Comput. Biol., 20, 224-236.
    • (2005) J. Comput. Biol. , vol.20 , pp. 224-236
    • Wang, Z.1    Hormozdiari, F.2    Yang, W.-Y.3    Halperin, E.4    Eskin, E.5
  • 33
    • 79954672317 scopus 로고    scopus 로고
    • Genome structural variation discovery and genotyping
    • Alkan,C., Coe,B.P. and Eichler,E.E. (2005) Genome structural variation discovery and genotyping. Nat. Rev. Genet., 12, 363-376.
    • (2005) Nat. Rev. Genet. , vol.12 , pp. 363-376
    • Alkan, C.1    Coe, B.P.2    Eichler, E.E.3
  • 38
    • 84870568092 scopus 로고    scopus 로고
    • A new strategy to reduce allelic bias in RNA-Seq readmapping
    • Satya,R.V., Zavaljevski,N. and Reifman,J. (2005) A new strategy to reduce allelic bias in RNA-Seq readmapping. Nucleic Acids Res., 40, e127.
    • (2005) Nucleic Acids Res. , vol.40
    • Satya, R.V.1    Zavaljevski, N.2    Reifman, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.