-
1
-
-
84878426391
-
Database citation in full text biomedical articles
-
Kafkas,S., Kim,J.H. and McEntyre,J.R. (2013) Database citation in full text biomedical articles. PloS One, 8, e63184.
-
(2013)
PloS One
, vol.8
-
-
Kafkas, S.1
Kim, J.H.2
McEntyre, J.R.3
-
2
-
-
84864051137
-
Improving links between literature and biological data with text mining: A case study with GEO, PDB and MEDLINE
-
Neveol,A., Wilbur,W.J. and Lu,Z. (2012) Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE. Database, 2012, bas026.
-
(2012)
Database
, vol.2012
-
-
Neveol, A.1
Wilbur, W.J.2
Lu, Z.3
-
3
-
-
84891783174
-
Activities at the universal protein resource (UniProt)
-
(2014) Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res., 42, D191-D198.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
-
4
-
-
80053651587
-
GenBank
-
Benson,D.A., Cavanaugh,M., Clark,K., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J. and Sayers,E.W. (2013) GenBank. Nucleic Acids Res., 41, D36-D42.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
5
-
-
78049480691
-
GeneCards Version 3: The human gene integrator
-
Safran,M., Dalah,I., Alexander,J., Rosen,N., Iny Stein,T., Shmoish,M., Nativ,N., Bahir,I., Doniger,T., Krug,H. et al. (2010) GeneCards Version 3: the human gene integrator. Database, 2010, baq020.
-
(2010)
Database
, vol.2010
-
-
Safran, M.1
Dalah, I.2
Alexander, J.3
Rosen, N.4
Iny Stein, T.5
Shmoish, M.6
Nativ, N.7
Bahir, I.8
Doniger, T.9
Krug, H.10
-
6
-
-
58149189856
-
McKusick's Online Mendelian Inheritance in Man (OMIM)
-
Amberger,J., Bocchini,C.A., Scott,A.F. and Hamosh,A. (2009) McKusick's Online Mendelian Inheritance in Man (OMIM). Nucleic Acids Res., 37, D793-D796.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Amberger, J.1
Bocchini, C.A.2
Scott, A.F.3
Hamosh, A.4
-
7
-
-
84891788593
-
The Mouse Genome Database: Integration of and access to knowledge about the laboratory mouse
-
Blake,J.A., Bult,C.J., Eppig,J.T., Kadin,J.A. and Richardson,J.E. (2014) The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res., 42, D810-D817.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Blake, J.A.1
Bult, C.J.2
Eppig, J.T.3
Kadin, J.A.4
Richardson, J.E.5
-
8
-
-
84876556918
-
EcoCyc: Fusing model organism databases with systems biology
-
Keseler,I.M., Mackie,A., Peralta-Gil,M., Santos-Zavaleta,A., Gama-Castro,S., Bonavides-Martinez,C., Fulcher,C., Huerta,A.M., Kothari,A., Krummenacker,M. et al. (2013) EcoCyc: fusing model organism databases with systems biology. Nucleic Acids Res., 41, D605-D612.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Keseler, I.M.1
Mackie, A.2
Peralta-Gil, M.3
Santos-Zavaleta, A.4
Gama-Castro, S.5
Bonavides-Martinez, C.6
Fulcher, C.7
Huerta, A.M.8
Kothari, A.9
Krummenacker, M.10
-
9
-
-
84891782659
-
Pfam: The protein families database
-
Finn,R.D., Bateman,A., Clements,J., Coggill,P., Eberhardt,R.Y., Eddy,S.R., Heger,A., Hetherington,K., Holm,L., Mistry,J. et al. (2014) Pfam: the protein families database. Nucleic Acids Res., 42, D222-D230.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
-
10
-
-
77958077228
-
DUFs: Families in search of function
-
Bateman,A., Coggill,P. and Finn,R.D. (2010) DUFs: families in search of function. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 66, 1148-1152.
-
(2010)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.66
, pp. 1148-1152
-
-
Bateman, A.1
Coggill, P.2
Finn, R.D.3
-
11
-
-
79953309471
-
GeneReporter-sequence-based document retrieval and annotation
-
Bartsch,A., Bunk,B., Haddad,I., Klein,J., Munch,R., Johl,T., Karst,U., Jansch,L., Jahn,D. and Retter,I. (2011) GeneReporter-sequence-based document retrieval and annotation. Bioinformatics, 27, 1034-1035.
-
(2011)
Bioinformatics
, vol.27
, pp. 1034-1035
-
-
Bartsch, A.1
Bunk, B.2
Haddad, I.3
Klein, J.4
Munch, R.5
Johl, T.6
Karst, U.7
Jansch, L.8
Jahn, D.9
Retter, I.10
-
12
-
-
24044501637
-
MineBlast: A literature presentation service supporting protein annotation by data mining of BLAST results
-
Dieterich,G., Karst,U., Wehland,J. and Jansch,L. (2005) MineBlast: a literature presentation service supporting protein annotation by data mining of BLAST results. Bioinformatics, 21, 3450-3451.
-
(2005)
Bioinformatics
, vol.21
, pp. 3450-3451
-
-
Dieterich, G.1
Karst, U.2
Wehland, J.3
Jansch, L.4
-
13
-
-
58149391028
-
Evading the annotation bottleneck: Using sequence similarity to search non-sequence gene data
-
Gilchrist,M.J., Christensen,M.B., Harland,R., Pollet,N., Smith,J.C., Ueno,N. and Papalopulu,N. (2008) Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data. BMC Bioinformatics, 9, 442.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 442
-
-
Gilchrist, M.J.1
Christensen, M.B.2
Harland, R.3
Pollet, N.4
Smith, J.C.5
Ueno, N.6
Papalopulu, N.7
-
14
-
-
27944477366
-
METIS: Multiple extraction techniques for informative sentences
-
Mitchell,A.L., Divoli,A., Kim,J.H., Hilario,M., Selimas,I. and Attwood,T.K. (2005) METIS: multiple extraction techniques for informative sentences. Bioinformatics, 21, 4196-4197.
-
(2005)
Bioinformatics
, vol.21
, pp. 4196-4197
-
-
Mitchell, A.L.1
Divoli, A.2
Kim, J.H.3
Hilario, M.4
Selimas, I.5
Attwood, T.K.6
-
15
-
-
0347724162
-
MedBlast: Searching articles related to a biological sequence
-
Tu,Q., Tang,H. and Ding,D. (2004) MedBlast: searching articles related to a biological sequence. Bioinformatics, 20, 75-77.
-
(2004)
Bioinformatics
, vol.20
, pp. 75-77
-
-
Tu, Q.1
Tang, H.2
Ding, D.3
-
16
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
17
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
18
-
-
84891804649
-
Database resources of the National Center for Biotechnology Information
-
(2014) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 42, D7-D17.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
-
19
-
-
79954533893
-
PubMed and beyond: A survey of web tools for searching biomedical literature
-
Lu,Z. (2011) PubMed and beyond: a survey of web tools for searching biomedical literature. Database, 2011, baq036.
-
(2011)
Database
, vol.2011
-
-
Lu, Z.1
-
20
-
-
0031957957
-
UMLS-based conceptual queries to biomedical information databases: An overview of the project ARIANE
-
Joubert,M., Fieschi,M., Robert,J.J., Volot,F. and Fieschi,D. (1998) UMLS-based conceptual queries to biomedical information databases: an overview of the project ARIANE. Unified Medical Language System. J. Am. Med. Inform. Assoc., 5, 52-61.
-
(1998)
Unified Medical Language System. J. Am. Med. Inform. Assoc.
, vol.5
, pp. 52-61
-
-
Joubert, M.1
Fieschi, M.2
Robert, J.J.3
Volot, F.4
Fieschi, D.5
-
21
-
-
85081821260
-
-
http://wordlist.sourceforge.net/
-
Beale,A. (2007). Release 5 of the 12dicts word lists. http://wordlist.sourceforge.net/12dicts-readme-r5.html; http://wordlist. sourceforge.net/
-
(2007)
Release 5 of the 12dicts Word Lists
-
-
Beale, A.1
-
22
-
-
23144463912
-
FFAS03: A server for profile-profile sequence alignments
-
Jaroszewski,L., Rychlewski,L., Li,Z., Li,W. and Godzik,A. (2005) FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Res., 33, W284-288.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Jaroszewski, L.1
Rychlewski, L.2
Li, Z.3
Li, W.4
Godzik, A.5
-
23
-
-
66149135655
-
The conserved sporulation protein YneE inhibits DNA replication in Bacillus subtilis
-
Rahn-Lee,L., Gorbatyuk,B., Skovgaard,O. and Losick,R. (2009) The conserved sporulation protein YneE inhibits DNA replication in Bacillus subtilis. J. Bacteriol., 191, 3736-3739.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3736-3739
-
-
Rahn-Lee, L.1
Gorbatyuk, B.2
Skovgaard, O.3
Losick, R.4
-
24
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
The Gene Ontology Consortium. Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
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