메뉴 건너뛰기




Volumn 21, Issue , 2014, Pages 83-88

Epigenetic regulation and functional exaptation of transposable elements in higher plants

Author keywords

[No Author keywords available]

Indexed keywords

TRANSPOSON;

EID: 84904754878     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2014.07.001     Document Type: Review
Times cited : (58)

References (59)
  • 1
    • 84871329875 scopus 로고    scopus 로고
    • How important are transposons for plant evolution?
    • Lisch D. How important are transposons for plant evolution?. Nat Rev Genet 2013, 14:49-61.
    • (2013) Nat Rev Genet , vol.14 , pp. 49-61
    • Lisch, D.1
  • 2
    • 84867050577 scopus 로고    scopus 로고
    • Transposable elements: an abundant and natural source of regulatory sequences for host genes
    • Rebollo R., Romanish M.T., Mager D.L. Transposable elements: an abundant and natural source of regulatory sequences for host genes. Annu Rev Genet 2012, 46:21-42.
    • (2012) Annu Rev Genet , vol.46 , pp. 21-42
    • Rebollo, R.1    Romanish, M.T.2    Mager, D.L.3
  • 3
    • 76949127123 scopus 로고
    • Chromosome organization and genic expression
    • Mc C.B. Chromosome organization and genic expression. Cold Spring Harb Symp Quant Biol 1951, 16:13-47.
    • (1951) Cold Spring Harb Symp Quant Biol , vol.16 , pp. 13-47
    • Mc, C.B.1
  • 5
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: where genetics meets genomics
    • Feschotte C., Jiang N., Wessler S.R. Plant transposable elements: where genetics meets genomics. Nat Rev Genet 2002, 3:329-341.
    • (2002) Nat Rev Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 6
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • Doolittle W.F., Sapienza C. Selfish genes, the phenotype paradigm and genome evolution. Nature 1980, 284:601-603.
    • (1980) Nature , vol.284 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 7
    • 0018857680 scopus 로고
    • Selfish DNA: the ultimate parasite
    • Orgel L.E., Crick F.H. Selfish DNA: the ultimate parasite. Nature 1980, 284:604-607.
    • (1980) Nature , vol.284 , pp. 604-607
    • Orgel, L.E.1    Crick, F.H.2
  • 8
    • 84899743736 scopus 로고    scopus 로고
    • The contributions of transposable elements to the structure, function, and evolution of plant genomes
    • Bennetzen J.L., Wang H. The contributions of transposable elements to the structure, function, and evolution of plant genomes. Annu Rev Plant Biol 2014, 10.1146/annurev-arplant-050213-035811.
    • (2014) Annu Rev Plant Biol
    • Bennetzen, J.L.1    Wang, H.2
  • 10
    • 84907150192 scopus 로고    scopus 로고
    • International Rice Genome Sequencing P: the map-based sequence of the rice genome
    • International Rice Genome Sequencing P: the map-based sequence of the rice genome. Nature 2005, 436:793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 12
    • 66449124318 scopus 로고    scopus 로고
    • Epigenetic regulation of transposable elements in plants
    • Lisch D. Epigenetic regulation of transposable elements in plants. Annu Rev Plant Biol 2009, 60:43-66.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 43-66
    • Lisch, D.1
  • 14
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010, 11:204-220.
    • (2010) Nat Rev Genet , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 16
    • 84875741680 scopus 로고    scopus 로고
    • The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
    • Zemach A., Kim M.Y., Hsieh P.H., Coleman-Derr D., Eshed-Williams L., Thao K., Harmer S.L., Zilberman D. The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 2013, 153:193-205.
    • (2013) Cell , vol.153 , pp. 193-205
    • Zemach, A.1    Kim, M.Y.2    Hsieh, P.H.3    Coleman-Derr, D.4    Eshed-Williams, L.5    Thao, K.6    Harmer, S.L.7    Zilberman, D.8
  • 17
    • 0032907728 scopus 로고    scopus 로고
    • Maintenance of genomic methylation requires a SWI2/SNF2-like protein
    • Jeddeloh J.A., Stokes T.L., Richards E.J. Maintenance of genomic methylation requires a SWI2/SNF2-like protein. Nat Genet 1999, 22:94-97.
    • (1999) Nat Genet , vol.22 , pp. 94-97
    • Jeddeloh, J.A.1    Stokes, T.L.2    Richards, E.J.3
  • 24
    • 84864441023 scopus 로고    scopus 로고
    • Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development
    • Song X., Wang D., Ma L., Chen Z., Li P., Cui X., Liu C., Cao S., Chu C., Tao Y., et al. Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development. Plant J 2012, 71:378-389.
    • (2012) Plant J , vol.71 , pp. 378-389
    • Song, X.1    Wang, D.2    Ma, L.3    Chen, Z.4    Li, P.5    Cui, X.6    Liu, C.7    Cao, S.8    Chu, C.9    Tao, Y.10
  • 25
    • 67149086996 scopus 로고    scopus 로고
    • Extensive demethylation of repetitive elements during seed development underlies gene imprinting
    • Gehring M., Bubb K.L., Henikoff S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 2009, 324:1447-1451.
    • (2009) Science , vol.324 , pp. 1447-1451
    • Gehring, M.1    Bubb, K.L.2    Henikoff, S.3
  • 27
    • 0035837378 scopus 로고    scopus 로고
    • Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
    • Miura A., Yonebayashi S., Watanabe K., Toyama T., Shimada H., Kakutani T. Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 2001, 411:212-214.
    • (2001) Nature , vol.411 , pp. 212-214
    • Miura, A.1    Yonebayashi, S.2    Watanabe, K.3    Toyama, T.4    Shimada, H.5    Kakutani, T.6
  • 33
    • 84883490032 scopus 로고    scopus 로고
    • Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis
    • Reinders J., Mirouze M., Nicolet J., Paszkowski J. Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis. EMBO Rep 2013, 14:823-828.
    • (2013) EMBO Rep , vol.14 , pp. 823-828
    • Reinders, J.1    Mirouze, M.2    Nicolet, J.3    Paszkowski, J.4
  • 35
    • 34247630796 scopus 로고    scopus 로고
    • SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice
    • Ding Y., Wang X., Su L., Zhai J., Cao S., Zhang D., Liu C., Bi Y., Qian Q., Cheng Z., et al. SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 2007, 19:9-22.
    • (2007) Plant Cell , vol.19 , pp. 9-22
    • Ding, Y.1    Wang, X.2    Su, L.3    Zhai, J.4    Cao, S.5    Zhang, D.6    Liu, C.7    Bi, Y.8    Qian, Q.9    Cheng, Z.10
  • 38
    • 84898620330 scopus 로고    scopus 로고
    • Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis
    • Baubec T., Finke A., Mittelsten Scheid O., Pecinka A. Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO Rep 2014, 15:446-452.
    • (2014) EMBO Rep , vol.15 , pp. 446-452
    • Baubec, T.1    Finke, A.2    Mittelsten Scheid, O.3    Pecinka, A.4
  • 39
    • 24944557093 scopus 로고    scopus 로고
    • Stress activation and genomic impact of plant retrotransposons
    • Grandbastien M.A. Stress activation and genomic impact of plant retrotransposons. J Soc Biol 2004, 198:425-432.
    • (2004) J Soc Biol , vol.198 , pp. 425-432
    • Grandbastien, M.A.1
  • 40
    • 78049460068 scopus 로고    scopus 로고
    • Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis
    • Pecinka A., Dinh H.Q., Baubec T., Rosa M., Lettner N., Mittelsten Scheid O. Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 2010, 22:3118-3129.
    • (2010) Plant Cell , vol.22 , pp. 3118-3129
    • Pecinka, A.1    Dinh, H.Q.2    Baubec, T.3    Rosa, M.4    Lettner, N.5    Mittelsten Scheid, O.6
  • 42
    • 79953746026 scopus 로고    scopus 로고
    • An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
    • Ito H., Gaubert H., Bucher E., Mirouze M., Vaillant I., Paszkowski J. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature 2011, 472:115-119.
    • (2011) Nature , vol.472 , pp. 115-119
    • Ito, H.1    Gaubert, H.2    Bucher, E.3    Mirouze, M.4    Vaillant, I.5    Paszkowski, J.6
  • 43
    • 77749309271 scopus 로고    scopus 로고
    • Mutations in retrotransposon AtCOPIA4 compromises resistance to Hyaloperonospora parasitica in Arabidopsis thaliana
    • Wang Y.H., Warren J.T. Mutations in retrotransposon AtCOPIA4 compromises resistance to Hyaloperonospora parasitica in Arabidopsis thaliana. Genet Mol Biol 2010, 33:135-140.
    • (2010) Genet Mol Biol , vol.33 , pp. 135-140
    • Wang, Y.H.1    Warren, J.T.2
  • 44
    • 1542321148 scopus 로고    scopus 로고
    • Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
    • Jiang N., Feschotte C., Zhang X., Wessler S.R. Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Curr Opin Plant Biol 2004, 7:115-119.
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 115-119
    • Jiang, N.1    Feschotte, C.2    Zhang, X.3    Wessler, S.R.4
  • 46
    • 0346003772 scopus 로고    scopus 로고
    • The plant MITE mPing is mobilized in anther culture
    • Kikuchi K., Terauchi K., Wada M., Hirano H.Y. The plant MITE mPing is mobilized in anther culture. Nature 2003, 421:167-170.
    • (2003) Nature , vol.421 , pp. 167-170
    • Kikuchi, K.1    Terauchi, K.2    Wada, M.3    Hirano, H.Y.4
  • 50
    • 80054968887 scopus 로고    scopus 로고
    • Identification of a functional transposon insertion in the maize domestication gene tb1
    • Studer A., Zhao Q., Ross-Ibarra J., Doebley J. Identification of a functional transposon insertion in the maize domestication gene tb1. Nat Genet 2011, 43:1160-1163.
    • (2011) Nat Genet , vol.43 , pp. 1160-1163
    • Studer, A.1    Zhao, Q.2    Ross-Ibarra, J.3    Doebley, J.4
  • 51
    • 84885829511 scopus 로고    scopus 로고
    • CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize
    • Yang Q., Li Z., Li W., Ku L., Wang C., Ye J., Li K., Yang N., Li Y., Zhong T., et al. CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize. Proc Natl Acad Sci U S A 2013, 110:16969-16974.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 16969-16974
    • Yang, Q.1    Li, Z.2    Li, W.3    Ku, L.4    Wang, C.5    Ye, J.6    Li, K.7    Yang, N.8    Li, Y.9    Zhong, T.10
  • 53
    • 84875971371 scopus 로고    scopus 로고
    • CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
    • Gent J.I., Ellis N.A., Guo L., Harkess A.E., Yao Y., Zhang X., Dawe R.K. CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Res 2013, 23:628-637.
    • (2013) Genome Res , vol.23 , pp. 628-637
    • Gent, J.I.1    Ellis, N.A.2    Guo, L.3    Harkess, A.E.4    Yao, Y.5    Zhang, X.6    Dawe, R.K.7
  • 54
    • 84883796284 scopus 로고    scopus 로고
    • An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication
    • Tsuchiya T., Eulgem T. An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication. Proc Natl Acad Sci U S A 2013, 110:E3535-E3543.
    • (2013) Proc Natl Acad Sci U S A , vol.110
    • Tsuchiya, T.1    Eulgem, T.2
  • 55
    • 84859199684 scopus 로고    scopus 로고
    • Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA
    • McCue A.D., Nuthikattu S., Reeder S.H., Slotkin R.K. Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet 2012, 8:e1002474.
    • (2012) PLoS Genet , vol.8
    • McCue, A.D.1    Nuthikattu, S.2    Reeder, S.H.3    Slotkin, R.K.4
  • 56
    • 84866946845 scopus 로고    scopus 로고
    • Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice
    • Nosaka M., Itoh J., Nagato Y., Ono A., Ishiwata A., Sato Y. Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice. PLoS Genet 2012, 8:e1002953.
    • (2012) PLoS Genet , vol.8
    • Nosaka, M.1    Itoh, J.2    Nagato, Y.3    Ono, A.4    Ishiwata, A.5    Sato, Y.6
  • 57
    • 84896288527 scopus 로고    scopus 로고
    • Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
    • Wei L., Gu L., Song X., Cui X., Lu Z., Zhou M., Wang L., Hu F., Zhai J., Meyers B.C., et al. Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice. Proc Natl Acad Sci U S A 2014, 111:3877-3882.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 3877-3882
    • Wei, L.1    Gu, L.2    Song, X.3    Cui, X.4    Lu, Z.5    Zhou, M.6    Wang, L.7    Hu, F.8    Zhai, J.9    Meyers, B.C.10
  • 59
    • 84896773085 scopus 로고    scopus 로고
    • Genetics. The secret garden-epigenetic alleles underlie complex traits
    • Schmitz R.J. Genetics. The secret garden-epigenetic alleles underlie complex traits. Science 2014, 343:1082-1083.
    • (2014) Science , vol.343 , pp. 1082-1083
    • Schmitz, R.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.