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Volumn , Issue , 2014, Pages 694-700

From scripted HPC-based NGS pipelines to workflows on the cloud

Author keywords

[No Author keywords available]

Indexed keywords

DATA FLOW ANALYSIS; GRID COMPUTING;

EID: 84904575197     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CCGrid.2014.128     Document Type: Conference Paper
Times cited : (9)

References (28)
  • 1
    • 77954526823 scopus 로고    scopus 로고
    • The case for cloud computing in genome informatics
    • Jan.
    • L. D. Stein, "The case for cloud computing in genome informatics." Genome biology, vol. 11, no. 5, p. 207, Jan. 2010.
    • (2010) Genome Biology , vol.11 , Issue.5 , pp. 207
    • Stein, L.D.1
  • 5
    • 84896448861 scopus 로고    scopus 로고
    • A survey of tools for variant analysis of next-generation genome sequencing data
    • Fischer, R. Snajder, M. Sperk, M. Efremova, B. Krabichler, M. R. Speicher, J. Zschocke, and Z. Trajanoski Jan.
    • S. Pabinger, A. Dander, M. Fischer, R. Snajder, M. Sperk, M. Efremova, B. Krabichler, M. R. Speicher, J. Zschocke, and Z. Trajanoski, "A survey of tools for variant analysis of next-generation genome sequencing data." Briefings in bioinformatics, pp. bbs086-, Jan. 2013.
    • (2013) Briefings in Bioinformatics
    • Pabinger, S.1    Dander M, A.2
  • 7
    • 84857934962 scopus 로고    scopus 로고
    • Achieving re-producibility by combining provenance with service and workflow versioning
    • Seattle, WA, USA
    • S. Woodman, H. Hiden, P. Watson, and P. Missier, "Achieving Re-producibility by Combining Provenance with Service and Workflow Versioning," in Procs. WORKS 2011, Seattle, WA, USA, 2011.
    • (2011) Procs. WORKS 2011
    • Woodman, S.1    Hiden, H.2    Watson, P.3    Missier, P.4
  • 10
    • 84888876464 scopus 로고    scopus 로고
    • Enabling large-scale biomedical analysis in the cloud
    • Jan.
    • Y.-C. Lin, C.-S. Yu, and Y.-J. Lin, "Enabling large-scale biomedical analysis in the cloud." BioMed research international, vol. 2013, p. 185679, Jan. 2013.
    • (2013) BioMed Research International , vol.2013 , pp. 185679
    • Lin, Y.-C.1    Yu, C.-S.2    Lin, Y.-J.3
  • 11
    • 84871772514 scopus 로고    scopus 로고
    • ASAP: An environment for automated preprocessing of sequencing data
    • Jan.
    • E. S. Torstenson, B. Li, and C. Li, "ASAP: an environment for automated preprocessing of sequencing data." BMC research notes, vol. 6, no. 1, p. 5, Jan. 2013.
    • (2013) BMC Research Notes , vol.6 , Issue.1 , pp. 5
    • Torstenson, E.S.1    Li, B.2    Li, C.3
  • 12
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Jan.
    • J. Goecks, A. Nekrutenko, and J. Taylor, "Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences." Genome biology, vol. 11, no. 8, p. R86, Jan. 2010.
    • (2010) Genome Biology , vol.11 , Issue.8
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 14
    • 84869862536 scopus 로고    scopus 로고
    • CloudMan as a platform for tool, data, and analysis distribution
    • Jan.
    • E. Afgan, B. Chapman, and J. Taylor, "CloudMan as a platform for tool, data, and analysis distribution." BMC bioinformatics, vol. 13, no. 1, p. 315, Jan. 2012.
    • (2012) BMC Bioinformatics , vol.13 , Issue.1 , pp. 315
    • Afgan, E.1    Chapman, B.2    Taylor, J.3
  • 16
    • 84860503874 scopus 로고    scopus 로고
    • Tavaxy: Integrating taverna and galaxy workflows with cloud computing support
    • Jan.
    • M. Abouelhoda, S. A. Issa, and M. Ghanem, "Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support." BMC bioinformatics, vol. 13, p. 77, Jan. 2012.
    • (2012) BMC Bioinformatics , vol.13 , pp. 77
    • Abouelhoda, M.1    Issa, S.A.2    Ghanem, M.3
  • 18
    • 85006201950 scopus 로고    scopus 로고
    • Lessons learned from implementing a national infrastructure in sweden for storage and analysis of next-generation sequencing data
    • Jan.
    • S. Lampa, M. Dahlö, P. I. Olason, J. Hagberg, and O. Spjuth, "Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data." GigaScience, vol. 2, no. 1, p. 9, Jan. 2013.
    • (2013) GigaScience , vol.2 , Issue.1 , pp. 9
    • Lampa, S.1    Dahlö, M.2    Olason, P.I.3    Hagberg, J.4    Spjuth, O.5
  • 19
    • 84877929637 scopus 로고    scopus 로고
    • Personalized cloud-based bioinformatics services for research and education: Use cases and the elasticHPC package
    • Jan.
    • M. El-Kalioby, M. Abouelhoda, J. Krüger, R. Giegerich, A. Sczyrba, D. P. Wall, and P. Tonellato, "Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package." BMC bioinformatics, vol. 13 Suppl 1, no. Suppl 17, p. S22, Jan. 2012.
    • (2012) BMC Bioinformatics , vol.13 , Issue.SUPPL 1
    • El-Kalioby, M.1    Abouelhoda, M.2    Krüger, J.3    Giegerich, R.4    Sczyrba, A.5    Wall, D.P.6    Tonellato, P.7
  • 25
    • 59849095285 scopus 로고    scopus 로고
    • Workflows and e-science: An overview of workflow system features and capabilities
    • may
    • E. Deelman, D. Gannon, M. Shields, and I. Taylor, "Workflows and e-science: An overview of workflow system features and capabilities," Future Generation Computer Systems, vol. 25, no. 5, pp. 528-540, may 2009.
    • (2009) Future Generation Computer Systems , vol.25 , Issue.5 , pp. 528-540
    • Deelman, E.1    Gannon, D.2    Shields, M.3    Taylor, I.4
  • 27
    • 70349753672 scopus 로고    scopus 로고
    • Benchmarking Amazon EC2 for high-performance scientific computing
    • E. Walker, "benchmarking Amazon EC2 for high-performance scientific computing," ;login:, vol. 33, no. 5, pp. 18-23, 2008.
    • (2008) Login , vol.33 , Issue.5 , pp. 18-23
    • Walker, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.