-
1
-
-
33749346025
-
Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus
-
Badger J.H., Hoover T.R., Brun Y.V., Weiner R.M., Laub M.T., Alexandre G., Mrazek J., Ren Q., Paulsen I.T., Nelson K.E., Khouri H.M., Radune D., Sosa J., Dodson R.J., Sullivan S.A., Rosovitz M.J., Madupu R., Brinkac L.M., Durkin A.S., Daugherty S.C., Kothari S.P., Giglio M.G., Zhou L., Haft D.H., Selengut J.D., Davidsen T.M., Yang Q., Zafar N., Ward N.L. Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. J. Bacteriol. 2006, 188:6841-6850.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 6841-6850
-
-
Badger, J.H.1
Hoover, T.R.2
Brun, Y.V.3
Weiner, R.M.4
Laub, M.T.5
Alexandre, G.6
Mrazek, J.7
Ren, Q.8
Paulsen, I.T.9
Nelson, K.E.10
Khouri, H.M.11
Radune, D.12
Sosa, J.13
Dodson, R.J.14
Sullivan, S.A.15
Rosovitz, M.J.16
Madupu, R.17
Brinkac, L.M.18
Durkin, A.S.19
Daugherty, S.C.20
Kothari, S.P.21
Giglio, M.G.22
Zhou, L.23
Haft, D.H.24
Selengut, J.D.25
Davidsen, T.M.26
Yang, Q.27
Zafar, N.28
Ward, N.L.29
more..
-
2
-
-
0003122014
-
Isoprenoid quinone analyses in bacterial classification and identification
-
Academic Press, London, M. Goodfellow, D.E. Minnikin (Eds.)
-
Collins M. Isoprenoid quinone analyses in bacterial classification and identification. Chemical Methods in Bacterial Systematics 1985, 267-287. Academic Press, London. M. Goodfellow, D.E. Minnikin (Eds.).
-
(1985)
Chemical Methods in Bacterial Systematics
, pp. 267-287
-
-
Collins, M.1
-
4
-
-
0022610725
-
Contribution of the electrophoretic pattern of cell envelope protein to the taxonomy of Hyphomonas spp.
-
Dagasan L., Weiner R.M. Contribution of the electrophoretic pattern of cell envelope protein to the taxonomy of Hyphomonas spp. Int. J. Syst. Bacteriol. 1986, 36:192-196.
-
(1986)
Int. J. Syst. Bacteriol.
, vol.36
, pp. 192-196
-
-
Dagasan, L.1
Weiner, R.M.2
-
5
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 1981, 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
6
-
-
84863230041
-
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
-
Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., Yi H., Won S., Chun J. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 2012, 62:716-721.
-
(2012)
Int. J. Syst. Evol. Microbiol.
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
Na, H.6
Park, S.C.7
Jeon, Y.S.8
Lee, J.H.9
Yi, H.10
Won, S.11
Chun, J.12
-
7
-
-
84921493397
-
The status of the species Hyphomonas rosenbergii Weiner et al. 2000. Request for an opinion
-
(under review)
-
Lai Q., Li C., Shao Z. The status of the species Hyphomonas rosenbergii Weiner et al. 2000. Request for an opinion. Int. J. Syst. Evol. Microbiol. 2014, (under review).
-
(2014)
Int. J. Syst. Evol. Microbiol.
-
-
Lai, Q.1
Li, C.2
Shao, Z.3
-
8
-
-
84904267026
-
Multilocus sequence analysis for the assessment of phylogenetic diversity and biogeography in Hyphomonas bacteria from diverse marine environments
-
Li C., Lai Q., Li G., Liu Y., Sun F., Shao Z. Multilocus sequence analysis for the assessment of phylogenetic diversity and biogeography in Hyphomonas bacteria from diverse marine environments. PLoS ONE 2014, 9:e101394. 10.1371/journal.pone.0101394.
-
(2014)
PLoS ONE
, vol.9
-
-
Li, C.1
Lai, Q.2
Li, G.3
Liu, Y.4
Sun, F.5
Shao, Z.6
-
9
-
-
19644397623
-
Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment
-
Liu C., Shao Z. Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int. J. Syst. Evol. Microbiol. 2005, 55:1181-1186.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 1181-1186
-
-
Liu, C.1
Shao, Z.2
-
10
-
-
84874011652
-
Genome sequence-based species delimitation with confidence intervals and improved distance functions
-
Meier-Kolthoff J.P., Auch A.F., Klenk H.P., Goker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013, 14:60.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 60
-
-
Meier-Kolthoff, J.P.1
Auch, A.F.2
Klenk, H.P.3
Goker, M.4
-
11
-
-
0021329739
-
Notes: Genus Hyphomonas Pongratz 1957 nom. rev. emend., Hyphomonas polymorpha Pongratz 1957 nom. rev. emend., and Hyphomonas neptunium (Leifson 1964) comb. nov. emend. (Hyphomicrobium neptunium)
-
Moore R.L., Weiner R.M., Gebers R. Notes: Genus Hyphomonas Pongratz 1957 nom. rev. emend., Hyphomonas polymorpha Pongratz 1957 nom. rev. emend., and Hyphomonas neptunium (Leifson 1964) comb. nov. emend. (Hyphomicrobium neptunium). Int. J. Syst. Bacteriol. 1984, 34:71-73.
-
(1984)
Int. J. Syst. Bacteriol.
, vol.34
, pp. 71-73
-
-
Moore, R.L.1
Weiner, R.M.2
Gebers, R.3
-
12
-
-
0342540799
-
D'une bactérie pédiculée isolée d'un pus de sinus
-
Pongratz E. D'une bactérie pédiculée isolée d'un pus de sinus. Shweiz. Z. Allg. Pathol. Bakteriol. 1957, 20:593-608.
-
(1957)
Shweiz. Z. Allg. Pathol. Bakteriol.
, vol.20
, pp. 593-608
-
-
Pongratz, E.1
-
13
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M., Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:19126-19131.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
14
-
-
0026660413
-
A simple method for estimating and testing minimum-evolution trees
-
Rzhetsky A., Nei M. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 1992, 9:945-967.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 945-967
-
-
Rzhetsky, A.1
Nei, M.2
-
15
-
-
0027185401
-
Theoretical foundation of the minimum-evolution method of phylogenetic inference
-
Rzhetsky A., Nei M. Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol. Biol. Evol. 1993, 10:1073-1095.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1073-1095
-
-
Rzhetsky, A.1
Nei, M.2
-
16
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
17
-
-
0001859086
-
Identification of bacteria by gas chromatography of cellular fatty acids
-
MIDI Inc., Newark, DE
-
Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101 1990, MIDI Inc., Newark, DE.
-
(1990)
MIDI Technical Note 101
-
-
Sasser, M.1
-
18
-
-
0037357803
-
Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water
-
Shieh W.Y., Chen Y.-W., Chaw S.-M., Chiu H.-H. Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water. Int. J. Syst. Evol. Microbiol. 2003, 53:479-484.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 479-484
-
-
Shieh, W.Y.1
Chen, Y.-W.2
Chaw, S.-M.3
Chiu, H.-H.4
-
19
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
20
-
-
61449093226
-
A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1
-
Wang B., Lai Q., Cui Z., Tan T., Shao Z. A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1. Environ. Microbiol. 2008, 10:1948-1963.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 1948-1963
-
-
Wang, B.1
Lai, Q.2
Cui, Z.3
Tan, T.4
Shao, Z.5
-
21
-
-
85020576607
-
Hyphomona (ex Pongratz 1957) Moore, Weiner and Gebers 1984, 71, emend. Weiner, Melick, O'Neill and Quintero 2000, 466
-
Springer, USA, D.J. Brenner, N.R. Krieg, G.M. Garrity, J.T. Staley, D.R. Boone, P. Vos, M. Goodfellow, F.A. Rainey, K.-H. Schleifer (Eds.)
-
® of Systematic Bacteriology 2005, 179-187. Springer, USA. D.J. Brenner, N.R. Krieg, G.M. Garrity, J.T. Staley, D.R. Boone, P. Vos, M. Goodfellow, F.A. Rainey, K.-H. Schleifer (Eds.).
-
(2005)
® of Systematic Bacteriology
, pp. 179-187
-
-
Weiner, R.M.1
-
22
-
-
0021850114
-
Hyphomonas oceanitis sp. nov., Hyphomonas hirschiana sp. nov., and Hyphomonas jannaschiana sp. nov.
-
Weiner R.M., Devine R.A., Powell D.M., Dagasan L., Moore R.L. Hyphomonas oceanitis sp. nov., Hyphomonas hirschiana sp. nov., and Hyphomonas jannaschiana sp. nov. Int. J. Syst. Bacteriol. 1985, 35:237-243.
-
(1985)
Int. J. Syst. Bacteriol.
, vol.35
, pp. 237-243
-
-
Weiner, R.M.1
Devine, R.A.2
Powell, D.M.3
Dagasan, L.4
Moore, R.L.5
-
23
-
-
0034070976
-
Hyphomonas adhaerens sp. nov., Hyphomonas johnsonii sp. nov. and Hyphomonas rosenbergii sp. nov., marine budding and prosthecate bacteria
-
Weiner R.M., Melick M., O'Neill K., Quintero E. Hyphomonas adhaerens sp. nov., Hyphomonas johnsonii sp. nov. and Hyphomonas rosenbergii sp. nov., marine budding and prosthecate bacteria. Int. J. Syst. Evol. Microbiol. 2000, 50:459-469.
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 459-469
-
-
Weiner, R.M.1
Melick, M.2
O'Neill, K.3
Quintero, E.4
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