Elongated structure of the outer-membrane activator of peptidoglycan synthesis LpoA: Implications for PBP1A stimulation

Structure

Volumn 22, Issue 7, 2014, Pages 1047-1054

  Jean, Nicolas L ^a,b,c   Bougault, Catherine M ^a,b,c   Lodge, Adam ^d   Derouaux, Adeline ^d   Callens, Gilles ^d   Egan, Alexander J F ^d   Ayala, Isabel ^a,b,c   Lewis, Richard J ^d   Vollmer, Waldemar ^d   Simorre, Jean Pierre ^a,b,c  

^a UNIV GRENOBLE ALPES   (France)

^b CEA GRENOBLE   (France)

^c INSTITUT DE BIOLOGIE STRUCTURALE   (France)

^d NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

HELIX LOOP HELIX PROTEIN; LIPOPROTEIN A; PBP1A PROTEIN; PEPTIDOGLYCAN; SCAFFOLD PROTEIN; UNCLASSIFIED DRUG; ESCHERICHIA COLI PROTEIN; LIPOPROTEIN; LPOA PROTEIN, E COLI; OUTER MEMBRANE PROTEIN; PENICILLIN BINDING PROTEIN; PROTEIN BINDING;

ARTICLE; CYTOPLASM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OUTER MEMBRANE; PRIORITY JOURNAL; PROTEIN SYNTHESIS; TETRATRICOPEPTIDE REPEAT; ULTRACENTRIFUGATION; X RAY CRYSTALLOGRAPHY; AMINO ACID SEQUENCE; BIOSYNTHESIS; CHEMICAL STRUCTURE; CHEMISTRY; ESCHERICHIA COLI; GENETICS; METABOLISM; MOLECULAR GENETICS; PH; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; SMALL ANGLE SCATTERING; TEMPERATURE; X RAY DIFFRACTION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

AMINO ACID SEQUENCE; BACTERIAL OUTER MEMBRANE PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HYDROGEN-ION CONCENTRATION; LIPOPROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PENICILLIN-BINDING PROTEINS; PEPTIDOGLYCAN; PERIPLASM; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SCATTERING, SMALL ANGLE; SEQUENCE HOMOLOGY, AMINO ACID; TEMPERATURE; X-RAY DIFFRACTION;

EID: 84904168802     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2014.04.017     Document Type: Article

References (31)

1. R.K. Allan, and T. Ratajczak Versatile TPR domains accommodate different modes of target protein recognition and function Cell Stress Chaperones 16 2011 353 367
2. M. Banzhaf, B. van den Berg van Saparoea, M. Terrak, C. Fraipont, A. Egan, J. Philippe, A. Zapun, E. Breukink, M. Nguyen-Distèche, T. den Blaauwen, and W. Vollmer Cooperativity of peptidoglycan synthases active in bacterial cell elongation Mol. Microbiol. 85 2012 179 194
3. U. Bertsche, E. Breukink, T. Kast, and W. Vollmer In vitro murein peptidoglycan synthesis by dimers of the bifunctional transglycosylase- transpeptidase PBP1B from Escherichia coli J. Biol. Chem. 280 2005 38096 38101
4. A. Biegert, C. Mayer, M. Remmert, J. Söding, and A.N. Lupas The MPI Bioinformatics Toolkit for protein sequence analysis Nucleic Acids Res. 34 2006 W335 W339
5. P. Born, E. Breukink, and W. Vollmer In vitro synthesis of cross-linked murein and its attachment to sacculi by PBP1A from Escherichia coli J. Biol. Chem. 281 2006 26985 26993
6. P. Demchick, and A.L. Koch The permeability of the wall fabric of Escherichia coli and Bacillus subtilis J. Bacteriol. 178 1996 768 773
7. P. Guerry, and T. Herrmann Comprehensive automation for NMR structure determination of proteins Methods Mol. Biol. 831 2012 429 451
8. S. Han, N. Caspers, R.P. Zaniewski, B.M. Lacey, A.P. Tomaras, X. Feng, K.F. Geoghegan, and V. Shanmugasundaram Distinctive attributes of β-lactam target proteins in Acinetobacter baumannii relevant to development of new antibiotics J. Am. Chem. Soc. 133 2011 20536 20545
9. L. Holm, and P. Rosenström Dali server: conservation mapping in 3D Nucleic Acids Res. 38 2010 W545 W549
10. 15N NMR assignments of the N-terminal domain of Escherichia coli LpoA Biomol. NMR Assign. 2014 10.1007/s12104-014-9546-2 Published online February 4, 2014
11. L.A. Kelley, and M.J. Sternberg Protein structure prediction on the Web: a case study using the Phyre server Nat. Protoc. 4 2009 363 371
12. K.H. Kim, S. Aulakh, and M. Paetzel Crystal structure of β-barrel assembly machinery BamCD protein complex J. Biol. Chem. 286 2011 39116 39121
13. A.L. Lovering, L.H. de Castro, D. Lim, and N.C. Strynadka Structural insight into the transglycosylation step of bacterial cell-wall biosynthesis Science 315 2007 1402 1405
14. C. Paradis-Bleau, M. Markovski, T. Uehara, T.J. Lupoli, S. Walker, D.E. Kahne, and T.G. Bernhardt Lipoprotein cofactors located in the outer membrane activate bacterial cell wall polymerases Cell 143 2010 1110 1120
15. M.V. Petoukhov, P.V. Konarev, A.G. Kikhney, and D.I. Svergun ATSAS 2.1 - towards automated and web-supported small-angle scattering data analysis J. Appl. Cryst. 40 2007 223 228
16. W. Rieping, M. Habeck, B. Bardiaux, A. Bernard, T.E. Malliavin, and M. Nilges ARIA2: automated NOE assignment and data integration in NMR structure calculation Bioinformatics 23 2007 381 382
17. C.M. Sandoval, S.L. Baker, K. Jansen, S.I. Metzner, and M.C. Sousa Crystal structure of BamD: an essential component of the β-Barrel assembly machinery of Gram-negative bacteria J. Mol. Biol. 409 2011 348 357
18. P. Schuck Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling Biophys. J. 78 2000 1606 1619
19. Y. Shen, F. Delaglio, G. Cornilescu, and A. Bax TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts J. Biomol. NMR 44 2009 213 223
20. Z. Solyom, M. Schwarten, L. Geist, R. Konrat, D. Willbold, and B. Brutscher BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins J. Biomol. NMR 55 2013 311 321
21. M.T. Sung, Y.T. Lai, C.Y. Huang, L.Y. Chou, H.W. Shih, W.C. Cheng, C.H. Wong, and C. Ma Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli Proc. Natl. Acad. Sci. USA 106 2009 8824 8829
22. D.I. Svergun Determination of the regularization parameter in indirect-transform methods using perceptual criteria J. Appl. Cryst. 25 1992 495 503
23. P. Szwedziak, and J. Löwe Do the divisome and elongasome share a common evolutionary past? Curr. Opin. Microbiol. 16 2013 745 751
24. V. Tugarinov, P.M. Hwang, J.E. Ollerenshaw, and L.E. Kay Cross-correlated relaxation enhanced 1H-13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes J. Am. Chem. Soc. 125 2003 10420 10428
25. A. Typas, M. Banzhaf, B. van den Berg van Saparoea, J. Verheul, J. Biboy, R.J. Nichols, M. Zietek, K. Beilharz, K. Kannenberg, and M. von Rechenberg et al. Regulation of peptidoglycan synthesis by outer-membrane proteins Cell 143 2010 1097 1109
26. A. Typas, M. Banzhaf, C.A. Gross, and W. Vollmer From the regulation of peptidoglycan synthesis to bacterial growth and morphology Nat. Rev. Microbiol. 10 2012 123 136
27. N. Vázquez-Laslop, H. Lee, R. Hu, and A.A. Neyfakh Molecular sieve mechanism of selective release of cytoplasmic proteins by osmotically shocked Escherichia coli J. Bacteriol. 183 2001 2399 2404
28. J. Vijayalakshmi, B.J. Akerley, and M.A. Saper Structure of YraM, a protein essential for growth of Haemophilus influenzae Proteins 73 2008 204 217
29. W. Vollmer, and J.-V. Höltje The architecture of the murein (peptidoglycan) in Gram-negative bacteria: vertical scaffold or horizontal layer(s)? J. Bacteriol. 186 2004 5978 5987
30. W. Vollmer, D. Blanot, and M.A. de Pedro Peptidoglycan structure and architecture FEMS Microbiol. Rev. 32 2008 149 167
31. N. Zeytuni, and R. Zarivach Structural and functional discussion of the tetra-trico-peptide repeat, a protein interaction module Structure 20 2012 397 405