-
1
-
-
84904110522
-
-
website, (accessed: January 14, 2014)
-
Boost website, http://www.boost.org/ (accessed: January 14, 2014)
-
-
-
-
2
-
-
84904099634
-
-
website, (accessed: January 10, 2014)
-
CPN tools website, http://cpntools.org/ (accessed: January 10, 2014)
-
-
-
-
3
-
-
84904131974
-
-
website, (accessed: January 10, 2014)
-
Virtual cell website, http://vcell.org/ (accessed: January 10, 2014)
-
-
-
-
4
-
-
84904100955
-
-
website, (accessed: January 15, 2014)
-
wxWidgets website, http://www.wxwidgets.org/ (accessed: January 15, 2014)
-
-
-
-
5
-
-
0034688220
-
Biological rhythms: Circadian clocks limited by noise
-
Barkai, N., Leibler, S.: Biological rhythms: circadian clocks limited by noise. Nature 403, 267-268 (2000)
-
(2000)
Nature
, vol.403
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
6
-
-
84883056967
-
Multiscale Modelling and Analysis of Planar Cell Polarity in the Drosophila Wing
-
Gao, Q., Gilbert, D., Heiner, M., Liu, F., Maccagnola, D., Tree, D.: Multiscale Modelling and Analysis of Planar Cell Polarity in the Drosophila Wing. IEEE/ACM Transactions on Computational Biology and Bioinformatics 10(2), 337-351 (2013)
-
(2013)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.10
, Issue.2
, pp. 337-351
-
-
Gao, Q.1
Gilbert, D.2
Heiner, M.3
Liu, F.4
Maccagnola, D.5
Tree, D.6
-
7
-
-
33746061326
-
From Petri nets to differential equations - An integrative approach for biochemical network analysis
-
DOI 10.1007/11767589-11, Petri Nets and Other Models of Concurrency - ICATPN 2006 - 27th International Conference on Applications and Theory of Petri Nets and Other Models of Concurrency, Proceedings
-
Gilbert, D., Heiner, M.: From Petri nets to differential equations - an integrative approach for biochemical network analysis. In: Donatelli, S., Thiagarajan, P. (eds.) ICATPN 2006. LNCS, vol. 4024, pp. 181-200. Springer, Heidelberg (2006) (Pubitemid 44071794)
-
(2006)
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
, vol.4024 LNCS
, pp. 181-200
-
-
Gilbert, D.1
Heiner, M.2
-
8
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81(25), 2340-2361 (1977)
-
(1977)
Journal of Physical Chemistry
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
9
-
-
84862502916
-
Snoopy - A unifying Petri net tool
-
Haddad, S., Pomello, L. (eds.) PETRI NETS 2012. Springer, Heidelberg
-
Heiner, M., Herajy, M., Liu, F., Rohr, C., Schwarick, M.: Snoopy - A unifying Petri net tool. In: Haddad, S., Pomello, L. (eds.) PETRI NETS 2012. LNCS, vol. 7347, pp. 398-407. Springer, Heidelberg (2012)
-
(2012)
LNCS
, vol.7347
, pp. 398-407
-
-
Heiner, M.1
Herajy, M.2
Liu, F.3
Rohr, C.4
Schwarick, M.5
-
11
-
-
84865545231
-
Hybrid representation and simulation of stiff biochemical networks
-
Herajy, M., Heiner, M.: Hybrid representation and simulation of stiff biochemical networks. J. Nonlinear Analysis: Hybrid Systems 6(4), 942-959 (2012)
-
(2012)
J. Nonlinear Analysis: Hybrid Systems
, vol.6
, Issue.4
, pp. 942-959
-
-
Herajy, M.1
Heiner, M.2
-
13
-
-
84893684114
-
Petri net-based collaborative simulation and steering of biochemical reaction networks
-
Herajy, M., Heiner, M.: Petri net-based collaborative simulation and steering of biochemical reaction networks. Fundamenta Informatica (129), 49-67 (2014)
-
(2014)
Fundamenta Informatica
, Issue.129
, pp. 49-67
-
-
Herajy, M.1
Heiner, M.2
-
14
-
-
84883137070
-
Hybrid Petri Nets for Modelling the Eukaryotic Cell Cycle
-
Koutny, M., van der Aalst, W.M.P., Yakovlev, A. (eds.) ToPNoC VIII. Springer, Heidelberg
-
Herajy, M., Schwarick, M., Heiner, M.: Hybrid Petri Nets for Modelling the Eukaryotic Cell Cycle. In: Koutny, M., van der Aalst, W.M.P., Yakovlev, A. (eds.) ToPNoC VIII. LNCS, vol. 8100, pp. 123-141. Springer, Heidelberg (2013)
-
(2013)
LNCS
, vol.8100
, pp. 123-141
-
-
Herajy, M.1
Schwarick, M.2
Heiner, M.3
-
15
-
-
33745217791
-
Sundials: Suite of nonlinear and differential/algebraic equation solvers
-
Hindmarsh, A., Brown, P., Grant, K., Lee, S., Serban, R., Shumaker, D., Woodward, C.: Sundials: Suite of nonlinear and differential/algebraic equation solvers. ACM Trans. Math. Softw. 31, 363-396 (2005)
-
(2005)
ACM Trans. Math. Softw.
, vol.31
, pp. 363-396
-
-
Hindmarsh, A.1
Brown, P.2
Grant, K.3
Lee, S.4
Serban, R.5
Shumaker, D.6
Woodward, C.7
-
16
-
-
84862490135
-
CPN Assistant II: A tool for management of networked simulations
-
Haddad, S., Pomello, L. (eds.) PETRI NETS 2012. Springer, Heidelberg
-
Korečko, Š., Marcinčin, J., Slodičak, V.: CPN Assistant II: A tool for management of networked simulations. In: Haddad, S., Pomello, L. (eds.) PETRI NETS 2012. LNCS, vol. 7347, pp. 408-417. Springer, Heidelberg (2012)
-
(2012)
LNCS
, vol.7347
, pp. 408-417
-
-
Korečko, Š.1
Marcinčin, J.2
Slodičak, V.3
-
17
-
-
84855891503
-
Petri nets in Snoopy: A unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks
-
ch. 1
-
Marwan, W., Rohr, C., Heiner, M.: Petri nets in Snoopy: A unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks. In: Methods in Molec. Biol., vol. 804, ch. 1, pp. 409-437 (2012)
-
(2012)
Methods in Molec. Biol.
, vol.804
, pp. 409-437
-
-
Marwan, W.1
Rohr, C.2
Heiner, M.3
-
18
-
-
80055024030
-
Hybrid Petri net based modeling for biological pathway simulation
-
Matsuno, H., Nagasaki, M., Miyano, S.: Hybrid Petri net based modeling for biological pathway simulation. Natural Computing 10(3), 1099-1120 (2011)
-
(2011)
Natural Computing
, vol.10
, Issue.3
, pp. 1099-1120
-
-
Matsuno, H.1
Nagasaki, M.2
Miyano, S.3
-
19
-
-
77952066951
-
Cell Illustrator 4.0: A Computational Platform for Systems Biology
-
Nagasaki, M., Saito, A., Jeong, E., Li, C., Kojima, K., Ikeda, E., Miyano, S.: Cell Illustrator 4.0: a Computational Platform for Systems Biology. Silico Biology 10 (2010)
-
(2010)
Silico Biology
, vol.10
-
-
Nagasaki, M.1
Saito, A.2
Jeong, E.3
Li, C.4
Kojima, K.5
Ikeda, E.6
Miyano, S.7
-
20
-
-
77951956151
-
Snoopy - A unifying Petri net framework to investigate biomolecular networks
-
Advanced Access published February 7, 2010
-
Rohr, C., Marwan, W., Heiner, M.: Snoopy - a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26(7), 974-975 (2010) (Advanced Access published February 7, 2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.7
, pp. 974-975
-
-
Rohr, C.1
Marwan, W.2
Heiner, M.3
|