메뉴 건너뛰기




Volumn 2014, Issue , 2014, Pages

An empirical study of different approaches for protein classification

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID COMPOSITION; AMINO ACID SEQUENCE; AREA UNDER THE CURVE; ARTICLE; BIOINFORMATICS; EMPIRICISM; HYDROPHOBICITY; PHYSICAL CHEMISTRY; POSITION WEIGHT MATRIX; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; SUPPORT VECTOR MACHINE; ALGORITHM; ARTIFICIAL INTELLIGENCE; BIOLOGY; CHEMISTRY; CLASSIFICATION; PROCEDURES;

EID: 84904104603     PISSN: 23566140     EISSN: 1537744X     Source Type: Journal    
DOI: 10.1155/2014/236717     Document Type: Article
Times cited : (67)

References (74)
  • 1
    • 84862777877 scopus 로고    scopus 로고
    • ProClusEnsem: Predicting membrane protein types by fusing different models of pseudo amino acid composition
    • Wang J., Li Y., Wang Q., Zhang J., You X., Man J., Wang C., Gao X., ProClusEnsem: predicting membrane protein types by fusing different models of pseudo amino acid composition. Computers in Biology and Medicine 2012 42 5 564 574
    • (2012) Computers in Biology and Medicine , vol.42 , Issue.5 , pp. 564-574
    • Wang, J.1    Li, Y.2    Wang, Q.3    Zhang, J.4    You, X.5    Man, J.6    Wang, C.7    Gao, X.8
  • 2
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition
    • 2-s2.0-79951518208 10.1016/j.jtbi.2010.12.024
    • Chou K.-C., Some remarks on protein attribute prediction and pseudo amino acid composition. Journal of Theoretical Biology 2011 273 1 236 247 2-s2.0-79951518208 10.1016/j.jtbi.2010.12.024
    • (2011) Journal of Theoretical Biology , vol.273 , Issue.1 , pp. 236-247
    • Chou, K.-C.1
  • 3
    • 34447095147 scopus 로고    scopus 로고
    • MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
    • DOI 10.1016/j.bbrc.2007.06.027, PII S0006291X07012521
    • Chou K.-C., Shen H.-B., MemType-2L: a Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochemical and Biophysical Research Communications 2007 360 2 339 345 2-s2.0-34447095147 10.1016/j.bbrc.2007.06.027 (Pubitemid 47030350)
    • (2007) Biochemical and Biophysical Research Communications , vol.360 , Issue.2 , pp. 339-345
    • Chou, K.-C.1    Shen, H.-B.2
  • 4
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • DOI 10.1016/j.ab.2007.07.006, PII S0003269707004423
    • Chou K.-C., Shen H.-B., Recent progress in protein subcellular location prediction. Analytical Biochemistry 2007 370 1 1 16 2-s2.0-34548606295 10.1016/j.ab.2007.07.006 (Pubitemid 47404494)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.-C.1    Shen, H.-B.2
  • 5
    • 34247544233 scopus 로고    scopus 로고
    • Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
    • DOI 10.1016/j.bbrc.2007.03.162, PII S0006291X0700664X
    • Chou K.-C., Shen H.-B., Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides. Biochemical and Biophysical Research Communications 2007 357 3 633 640 2-s2.0-34247544233 10.1016/j.bbrc.2007.03.162 (Pubitemid 46653826)
    • (2007) Biochemical and Biophysical Research Communications , vol.357 , Issue.3 , pp. 633-640
    • Chou, K.-C.1    Shen, H.-B.2
  • 6
    • 77953298113 scopus 로고    scopus 로고
    • A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0
    • 2-s2.0-77953298113 10.1371/journal.pone.0009931 e9931
    • Chou K.-C., Shen H.-B., A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0. PLoS ONE 2010 5 4 2-s2.0-77953298113 10.1371/journal.pone.0009931 e9931
    • (2010) PLoS ONE , vol.5 , Issue.4
    • Chou, K.-C.1    Shen, H.-B.2
  • 7
    • 1242288051 scopus 로고    scopus 로고
    • Encoding of primary structures of biological macromolecules within a data mining perspective
    • 2-s2.0-1242288051
    • Maddouri M., Elloumi M., Encoding of primary structures of biological macromolecules within a data mining perspective. Journal of Computer Science and Technology 2004 19 1 78 88 2-s2.0-1242288051
    • (2004) Journal of Computer Science and Technology , vol.19 , Issue.1 , pp. 78-88
    • Maddouri, M.1    Elloumi, M.2
  • 8
    • 77950680873 scopus 로고    scopus 로고
    • Protein sequences classification by means of feature extraction with substitution matrices
    • article 175 2-s2.0-77950680873 10.1186/1471-2105-11-175
    • Saidi R., Maddouri M., Mephu Nguifo E., Protein sequences classification by means of feature extraction with substitution matrices. BMC Bioinformatics 2010 11, article 175 2-s2.0-77950680873 10.1186/1471-2105-11-175
    • (2010) BMC Bioinformatics , pp. 11
    • Saidi, R.1    Maddouri, M.2    Mephu Nguifo, E.3
  • 9
    • 0022631926 scopus 로고
    • The folding type of a protein is relevant to the amino acid composition
    • Nakashima H., Nishikawa K., Ooi T., The folding type of a protein is relevant to the amino acid composition. Journal of Biochemistry 1986 99 1 153 162 2-s2.0-0022631926 (Pubitemid 16188308)
    • (1986) Journal of Biochemistry , vol.99 , Issue.1 , pp. 153-162
    • Nakashima, H.1    Nishikawa, K.2    Ooi, T.3
  • 10
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo-amino acid composition
    • DOI 10.1002/prot.1035
    • Chou K.-C., Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins: Structure, Function and Genetics 2001 43 3 246 255 2-s2.0-0035874091 10.1002/prot.1035 (Pubitemid 32367799)
    • (2001) Proteins: Structure, Function and Genetics , vol.43 , Issue.3 , pp. 246-255
    • Chou, K.-C.1
  • 11
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • 2-s2.0-72449203319 10.2174/157016409789973707
    • Chou K.-C., Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Current Proteomics 2009 6 4 262 274 2-s2.0-72449203319 10.2174/157016409789973707
    • (2009) Current Proteomics , vol.6 , Issue.4 , pp. 262-274
    • Chou, K.-C.1
  • 12
    • 77953934865 scopus 로고    scopus 로고
    • High performance set of PseAAC and sequence based descriptors for protein classification
    • 2-s2.0-77953934865 10.1016/j.jtbi.2010.06.006
    • Nanni L., Brahnam S., Lumini A., High performance set of PseAAC and sequence based descriptors for protein classification. Journal of Theoretical Biology 2010 266 1 1 10 2-s2.0-77953934865 10.1016/j.jtbi.2010.06.006
    • (2010) Journal of Theoretical Biology , vol.266 , Issue.1 , pp. 1-10
    • Nanni, L.1    Brahnam, S.2    Lumini, A.3
  • 13
    • 33646871614 scopus 로고    scopus 로고
    • An ensemble of K-local hyperplanes for predicting protein-protein interactions
    • DOI 10.1093/bioinformatics/btl055
    • Nanni L., Lumini A., An ensemble of K-local hyperplanes for predicting protein-protein interactions. Bioinformatics 2006 22 10 1207 1210 2-s2.0-33646871614 10.1093/bioinformatics/btl055 (Pubitemid 43779012)
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1207-1210
    • Nanni, L.1    Lumini, A.2
  • 14
    • 77958586156 scopus 로고    scopus 로고
    • Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
    • 2-s2.0-77958586156 10.1016/j.jtbi.2010.10.019
    • Lin H., Ding H., Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition. Journal of Theoretical Biology 2011 269 1 64 69 2-s2.0-77958586156 10.1016/j.jtbi.2010.10.019
    • (2011) Journal of Theoretical Biology , vol.269 , Issue.1 , pp. 64-69
    • Lin, H.1    Ding, H.2
  • 15
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class protein fold recognition using support vector machines and neural networks
    • Ding C. H. Q., Dubchak I., Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics 2001 17 4 349 358 2-s2.0-0035014847 (Pubitemid 32421929)
    • (2001) Bioinformatics , vol.17 , Issue.4 , pp. 349-358
    • Ding, C.H.Q.1    Dubchak, I.2
  • 16
    • 84878789801 scopus 로고    scopus 로고
    • Using over-represented tetrapeptides to predict protein submitochondrial locations
    • Lin H., Chen W., Yuan L., Li Z., Ding H., Using over-represented tetrapeptides to predict protein submitochondrial locations. Acta Biotheoretica 2013 61 2 259 268
    • (2013) Acta Biotheoretica , vol.61 , Issue.2 , pp. 259-268
    • Lin, H.1    Chen, W.2    Yuan, L.3    Li, Z.4    Ding, H.5
  • 17
    • 70350448693 scopus 로고    scopus 로고
    • GPCR-GIA: A web-server for identifying G-protein coupled receptors and their families with grey incidence analysis
    • 2-s2.0-70350448693 10.1093/protein/gzp057
    • Lin W.-Z., Xiao X., Chou K.-C., GPCR-GIA: a web-server for identifying G-protein coupled receptors and their families with grey incidence analysis. Protein Engineering, Design and Selection 2009 22 11 699 705 2-s2.0-70350448693 10.1093/protein/gzp057
    • (2009) Protein Engineering, Design and Selection , vol.22 , Issue.11 , pp. 699-705
    • Lin, W.-Z.1    Xiao, X.2    Chou, K.-C.3
  • 18
    • 47549084414 scopus 로고    scopus 로고
    • Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes
    • 2-s2.0-47549084414 10.1002/jcc.20955
    • Xiao X., Lin W.-Z., Chou K.-C., Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes. Journal of Computational Chemistry 2008 29 12 2018 2024 2-s2.0-47549084414 10.1002/jcc.20955
    • (2008) Journal of Computational Chemistry , vol.29 , Issue.12 , pp. 2018-2024
    • Xiao, X.1    Lin, W.-Z.2    Chou, K.-C.3
  • 19
    • 32944461574 scopus 로고    scopus 로고
    • Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
    • 2-s2.0-32944461574 10.1007/s00726-005-0225-6
    • Xiao X., Shao S., Ding Y., Huang Z., Chou K.-C., Using cellular automata images and pseudo amino acid composition to predict protein subcellular location. Amino Acids 2006 30 1 49 54 2-s2.0-32944461574 10.1007/s00726-005- 0225-6
    • (2006) Amino Acids , vol.30 , Issue.1 , pp. 49-54
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Chou, K.-C.5
  • 20
    • 64749096548 scopus 로고    scopus 로고
    • GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
    • 2-s2.0-64749096548 10.1002/jcc.21163
    • Xiao X., Wang P., Chou K.-C., GPCR-CA: a cellular automaton image approach for predicting G-protein-coupled receptor functional classes. Journal of Computational Chemistry 2009 30 9 1414 1423 2-s2.0-64749096548 10.1002/jcc.21163
    • (2009) Journal of Computational Chemistry , vol.30 , Issue.9 , pp. 1414-1423
    • Xiao, X.1    Wang, P.2    Chou, K.-C.3
  • 21
    • 15244350269 scopus 로고    scopus 로고
    • Using complexity measure factor to predict protein subcellular location
    • DOI 10.1007/s00726-004-0148-7
    • Xiao X., Shao S., Ding Y., Huang Z., Huang Y., Chou K.-C., Using complexity measure factor to predict protein subcellular location. Amino Acids 2005 28 1 57 61 2-s2.0-15244350269 10.1007/s00726-004-0148-7 (Pubitemid 40385395)
    • (2005) Amino Acids , vol.28 , Issue.1 , pp. 57-61
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Huang, Y.5    Chou, K.-C.6
  • 24
    • 1542714925 scopus 로고    scopus 로고
    • Mismatch string kernels for discriminative protein classification
    • DOI 10.1093/bioinformatics/btg431
    • Leslie C. S., Eskin E., Cohen A., Weston J., Noble W. S., Mismatch string kernels for discriminative protein classification. Bioinformatics 2004 20 4 467 476 2-s2.0-1542714925 10.1093/bioinformatics/btg431 (Pubitemid 38344326)
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 467-476
    • Leslie, C.S.1    Eskin, E.2    Cohen, A.3    Weston, J.4    Noble, W.S.5
  • 25
    • 29244465822 scopus 로고    scopus 로고
    • An SVM-based system for predicting protein subnuclear localizations
    • DOI 10.1186/1471-2105-6-291
    • Lei Z., Dai Y., An SVM-based system for predicting protein subnuclear localizations. BMC Bioinformatics 2005 6, article 291 2-s2.0-29244465822 10.1186/1471-2105-6-291 (Pubitemid 41819446)
    • (2005) BMC Bioinformatics , vol.6 , pp. 291
    • Lei, Z.1    Dai, Y.2
  • 26
    • 13844272392 scopus 로고    scopus 로고
    • Bio-basis function neural network for prediction of protease cleavage sites in proteins
    • DOI 10.1109/TNN.2004.836196
    • Yang Z. R., Thomson R., Bio-basis function neural network for prediction of protease cleavage sites in proteins. IEEE Transactions on Neural Networks 2005 16 1 263 274 2-s2.0-13844272392 10.1109/TNN.2004.836196 (Pubitemid 40241925)
    • (2005) IEEE Transactions on Neural Networks , vol.16 , Issue.1 , pp. 263-274
    • Yang, Z.R.1    Thomson, R.2
  • 28
    • 84878368765 scopus 로고    scopus 로고
    • An empirical study on the matrix-based protein representations and their combination with sequence-based approaches
    • Nanni L., Lumini A., Brahnam S., An empirical study on the matrix-based protein representations and their combination with sequence-based approaches. Amino Acids 2013 44 3 887 901
    • (2013) Amino Acids , vol.44 , Issue.3 , pp. 887-901
    • Nanni, L.1    Lumini, A.2    Brahnam, S.3
  • 29
    • 84907214003 scopus 로고    scopus 로고
    • Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions
    • 10.1186/1752-0509-8-26
    • Hegde S. R., Pal K., Mande S. C., Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions. BMC Systems Biology 2014 8 26 10.1186/1752-0509-8-26
    • (2014) BMC Systems Biology , vol.8 , pp. 26
    • Hegde, S.R.1    Pal, K.2    Mande, S.C.3
  • 30
    • 77955645823 scopus 로고    scopus 로고
    • Prediction of deleterious non-synonymous SNPs based on protein interaction network and hybrid properties
    • 2-s2.0-77955645823 10.1371/journal.pone.0011900 e11900
    • Huang T., Wang P., Ye Z., Xu H., He Z., Feng K., Hu L., Cui W., Wang K., Dong X., Xie L., Kong X., Cai Y.-D., Li Y., Prediction of deleterious non-synonymous SNPs based on protein interaction network and hybrid properties. PLoS ONE 2010 5 7 2-s2.0-77955645823 10.1371/journal.pone.0011900 e11900
    • (2010) PLoS ONE , vol.5 , Issue.7
    • Huang, T.1    Wang, P.2    Ye, Z.3    Xu, H.4    He, Z.5    Feng, K.6    Hu, L.7    Cui, W.8    Wang, K.9    Dong, X.10    Xie, L.11    Kong, X.12    Cai, Y.-D.13    Li, Y.14
  • 32
    • 84868647779 scopus 로고    scopus 로고
    • Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction
    • 10.1186/1471-2105-13-294
    • Mora A., Donaldson I. M., Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction. BMC Bioinformatics 2012 13 294 10.1186/1471-2105-13-294
    • (2012) BMC Bioinformatics , vol.13 , pp. 294
    • Mora, A.1    Donaldson, I.M.2
  • 33
    • 79959415714 scopus 로고    scopus 로고
    • Generative probabilistic models for protein-protein interaction networks - The biclique perspective
    • 2-s2.0-79959415714 10.1093/bioinformatics/btr201
    • Schweiger R., Linial M., Linial N., Generative probabilistic models for protein-protein interaction networks-the biclique perspective. Bioinformatics 2011 27 13 i142 i148 2-s2.0-79959415714 10.1093/bioinformatics/btr201
    • (2011) Bioinformatics , vol.27 , Issue.13
    • Schweiger, R.1    Linial, M.2    Linial, N.3
  • 34
    • 84864770395 scopus 로고    scopus 로고
    • Wavelet images and Chou's pseudo amino acid composition for protein classification
    • Nanni L., Brahnam S., Lumini A., Wavelet images and Chou's pseudo amino acid composition for protein classification. Amino Acids 2012 43 2 657 665
    • (2012) Amino Acids , vol.43 , Issue.2 , pp. 657-665
    • Nanni, L.1    Brahnam, S.2    Lumini, A.3
  • 35
    • 0343621535 scopus 로고    scopus 로고
    • AAindex: Amino acid index database
    • Kawashima S., Kanehisa M., AAindex: amino acid index database. Nucleic Acids Research 2000 28 1 374 2-s2.0-0343621535 (Pubitemid 30047811)
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 374
    • Kawashima, S.1    Kanehisa, M.2
  • 37
    • 84862759124 scopus 로고    scopus 로고
    • Predicting subcellular location of apoptosis proteins with pseudo amino acid composition: Approach from amino acid substitution matrix and auto covariance transformation
    • 10.1007/s00726-011-0848-8
    • Yu X., Zheng X., Liu T., Dou Y., Wang J., Predicting subcellular location of apoptosis proteins with pseudo amino acid composition: approach from amino acid substitution matrix and auto covariance transformation. Amino Acids 2012 42 5 1619 1625 10.1007/s00726-011-0848-8
    • (2012) Amino Acids , vol.42 , Issue.5 , pp. 1619-1625
    • Yu, X.1    Zheng, X.2    Liu, T.3    Dou, Y.4    Wang, J.5
  • 38
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
    • DOI 10.2174/092986608784966930
    • Li F.-M., Li Q.-Z., Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein and Peptide Letters 2008 15 6 612 616 2-s2.0-47249153247 10.2174/092986608784966930 (Pubitemid 351991249)
    • (2008) Protein and Peptide Letters , vol.15 , Issue.6 , pp. 612-616
    • Li, F.-M.1    Li, Q.-Z.2
  • 42
    • 67349244013 scopus 로고    scopus 로고
    • Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
    • 2-s2.0-67349244013 10.1016/j.jtbi.2009.03.028
    • Zeng Y.-H., Guo Y.-Z., Xiao R.-Q., Yang L., Yu L.-Z., Li M.-L., Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. Journal of Theoretical Biology 2009 259 2 366 372 2-s2.0-67349244013 10.1016/j.jtbi.2009. 03.028
    • (2009) Journal of Theoretical Biology , vol.259 , Issue.2 , pp. 366-372
    • Zeng, Y.-H.1    Guo, Y.-Z.2    Xiao, R.-Q.3    Yang, L.4    Yu, L.-Z.5    Li, M.-L.6
  • 43
    • 46049118177 scopus 로고    scopus 로고
    • AAIndexLoc: Predicting subcellular localization of proteins based on a new representation of sequences using amino acid indices
    • 2-s2.0-46049118177 10.1007/s00726-007-0616-y
    • Tantoso E., Li K.-B., AAIndexLoc: predicting subcellular localization of proteins based on a new representation of sequences using amino acid indices. Amino Acids 2008 35 2 345 353 2-s2.0-46049118177 10.1007/s00726-007-0616-y
    • (2008) Amino Acids , vol.35 , Issue.2 , pp. 345-353
    • Tantoso, E.1    Li, K.-B.2
  • 44
    • 70349775502 scopus 로고    scopus 로고
    • Protein functional class prediction using global encoding of amino acid sequence
    • 2-s2.0-70349775502 10.1016/j.jtbi.2009.07.017
    • Li X., Liao B., Shu Y., Zeng Q., Luo J., Protein functional class prediction using global encoding of amino acid sequence. Journal of Theoretical Biology 2009 261 2 290 293 2-s2.0-70349775502 10.1016/j.jtbi.2009.07.017
    • (2009) Journal of Theoretical Biology , vol.261 , Issue.2 , pp. 290-293
    • Li, X.1    Liao, B.2    Shu, Y.3    Zeng, Q.4    Luo, J.5
  • 45
    • 0001338954 scopus 로고    scopus 로고
    • Simplified amino acid alphabets for protein fold recognition and implications for folding
    • Murphy L. R., Wallqvist A., Levy R. M., Simplified amino acid alphabets for protein fold recognition and implications for folding. Protein Engineering 2000 13 3 149 152 2-s2.0-0001338954 (Pubitemid 30237589)
    • (2000) Protein Engineering , vol.13 , Issue.3 , pp. 149-152
    • Murphy, L.R.1    Wallqvist, A.2    Levy, R.M.3
  • 46
    • 33646852452 scopus 로고    scopus 로고
    • Prediction of mitochondrial proteins using support vector machine and hidden Markov model
    • DOI 10.1074/jbc.M511061200
    • Kumar M., Verma R., Raghava G. P. S., Prediction of mitochondrial proteins using support vector machine and hidden Markov model. Journal of Biological Chemistry 2006 281 9 5357 5363 2-s2.0-33646852452 10.1074/jbc.M511061200 (Pubitemid 43847629)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.9 , pp. 5357-5363
    • Kumar, M.1    Verma, R.2    Raghava, G.P.S.3
  • 47
    • 79551655554 scopus 로고    scopus 로고
    • On position-specific scoring matrix for protein function prediction
    • 2-s2.0-79551655554 10.1109/TCBB.2010.93
    • Jeong J. C., Lin X., Chen X.-W., On position-specific scoring matrix for protein function prediction. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2011 8 2 308 315 2-s2.0-79551655554 10.1109/TCBB.2010.93
    • (2011) IEEE/ACM Transactions on Computational Biology and Bioinformatics , vol.8 , Issue.2 , pp. 308-315
    • Jeong, J.C.1    Lin, X.2    Chen, X.-W.3
  • 48
    • 39849091628 scopus 로고    scopus 로고
    • VirulentPred: A SVM based prediction method for virulent proteins in bacterial pathogens
    • DOI 10.1186/1471-2105-9-62
    • Garg A., Gupta D., VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens. BMC Bioinformatics 2008 9, article 62 2-s2.0-39849091628 10.1186/1471-2105-9-62 (Pubitemid 351314940)
    • (2008) BMC Bioinformatics , vol.9 , pp. 62
    • Garg, A.1    Gupta, D.2
  • 49
    • 77955877726 scopus 로고    scopus 로고
    • Using auto covariance method for functional discrimination of membrane proteins based on evolution information
    • 2-s2.0-77955877726 10.1007/s00726-009-0362-4
    • Yang L., Li Y., Xiao R., Zeng Y., Xiao J., Tan F., Li M., Using auto covariance method for functional discrimination of membrane proteins based on evolution information. Amino Acids 2010 38 5 1497 1503 2-s2.0-77955877726 10.1007/s00726-009-0362-4
    • (2010) Amino Acids , vol.38 , Issue.5 , pp. 1497-1503
    • Yang, L.1    Li, Y.2    Xiao, R.3    Zeng, Y.4    Xiao, J.5    Tan, F.6    Li, M.7
  • 50
    • 84904100292 scopus 로고    scopus 로고
    • Predicting protein submitochondrion locations by combining different descriptors into the general form of Chou's pseudo amino acid composition
    • Fan G.-L., Li Q.-Z., Predicting protein submitochondrion locations by combining different descriptors into the general form of Chou's pseudo amino acid composition. Amino Acids 2011 20 1 11
    • (2011) Amino Acids , vol.20 , pp. 1-11
    • Fan, G.-L.1    Li, Q.-Z.2
  • 51
    • 33747738463 scopus 로고
    • Singular value decomposition and least squares solutions
    • 2-s2.0-33747738463 10.1007/BF02163027
    • Golub G. H., Reinsch C., Singular value decomposition and least squares solutions. Numerische Mathematik 1970 14 5 403 420 2-s2.0-33747738463 10.1007/BF02163027
    • (1970) Numerische Mathematik , vol.14 , Issue.5 , pp. 403-420
    • Golub, G.H.1    Reinsch, C.2
  • 53
    • 84871963701 scopus 로고    scopus 로고
    • A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
    • 10.1016/j.jtbi.2012.12.008
    • Sharma A., Lyons J., Dehzangi A., Paliwal K. K., A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition. Journal of Theoretical Biology 2013 320 41 46 10.1016/j.jtbi.2012.12.008
    • (2013) Journal of Theoretical Biology , vol.320 , pp. 41-46
    • Sharma, A.1    Lyons, J.2    Dehzangi, A.3    Paliwal, K.K.4
  • 54
    • 70350632628 scopus 로고    scopus 로고
    • Rotation invariant image description with local binary pattern histogram fourier features
    • Springer Lecture Notes in Computer Science 2-s2.0-70350632628 10.1007/978-3-642-02230-2-7
    • Ahonen T., Matas J., He C., Pietikäinen M., Rotation invariant image description with local binary pattern histogram fourier features. Image Analysis 2009 5575 Springer 61 70 Lecture Notes in Computer Science 2-s2.0-70350632628 10.1007/978-3-642-02230-2-7
    • (2009) Image Analysis , vol.5575 , pp. 61-70
    • Ahonen, T.1    Matas, J.2    He, C.3    Pietikäinen, M.4
  • 55
    • 49049108892 scopus 로고    scopus 로고
    • Blur insensitive texture classification using local phase quantization
    • Lecture Notes in Computer Science 2-s2.0-49049108892 10.1007/978-3-540- 69905-7-27
    • Ojansivu V., Heikkilä J., Blur insensitive texture classification using local phase quantization. Image and Signal Processing 2008 5099 236 243 Lecture Notes in Computer Science 2-s2.0-49049108892 10.1007/978-3-540-69905-7- 27
    • (2008) Image and Signal Processing , vol.5099 , pp. 236-243
    • Ojansivu, V.1    Heikkilä, J.2
  • 56
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • DOI 10.1016/j.ab.2007.07.006, PII S0003269707004423
    • Chou K.-C., Shen H.-B., Recent progress in protein subcellular location prediction. Analytical Biochemistry 2007 370 1 1 16 2-s2.0-34548606295 10.1016/j.ab.2007.07.006 (Pubitemid 47404494)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.-C.1    Shen, H.-B.2
  • 57
    • 38149007012 scopus 로고    scopus 로고
    • Predicting DNA-binding proteins: Approached from Chou's pseudo amino acid composition and other specific sequence features
    • 2-s2.0-38149007012 10.1007/s00726-007-0568-2
    • Fang Y., Guo Y., Feng Y., Li M., Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features. Amino Acids 2008 34 1 103 109 2-s2.0-38149007012 10.1007/s00726-007- 0568-2
    • (2008) Amino Acids , vol.34 , Issue.1 , pp. 103-109
    • Fang, Y.1    Guo, Y.2    Feng, Y.3    Li, M.4
  • 58
    • 65349193478 scopus 로고    scopus 로고
    • Protein classification combining surface analysis and primary structure
    • 2-s2.0-65349193478 10.1093/protein/gzn084
    • Nanni L., Mazzara S., Pattini L., Lumini A., Protein classification combining surface analysis and primary structure. Protein Engineering, Design and Selection 2009 22 4 267 272 2-s2.0-65349193478 10.1093/protein/gzn084
    • (2009) Protein Engineering, Design and Selection , vol.22 , Issue.4 , pp. 267-272
    • Nanni, L.1    Mazzara, S.2    Pattini, L.3    Lumini, A.4
  • 59
    • 77957356489 scopus 로고    scopus 로고
    • Large-scale prediction of human protein-protein interactions from amino acid sequence based on latent topic features
    • 2-s2.0-77957356489 10.1021/pr100618t
    • Pan X.-Y., Zhang Y.-N., Shen H.-B., Large-scale prediction of human protein-protein interactions from amino acid sequence based on latent topic features. Journal of Proteome Research 2010 9 10 4992 5001 2-s2.0-77957356489 10.1021/pr100618t
    • (2010) Journal of Proteome Research , vol.9 , Issue.10 , pp. 4992-5001
    • Pan, X.-Y.1    Zhang, Y.-N.2    Shen, H.-B.3
  • 60
    • 33846010187 scopus 로고    scopus 로고
    • Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence
    • DOI 10.1186/1471-2105-7-518
    • Du P., Li Y., Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence. BMC Bioinformatics 2006 7, article 518 2-s2.0-33846010187 10.1186/1471-2105-7-518 (Pubitemid 46040027)
    • (2006) BMC Bioinformatics , vol.7 , pp. 518
    • Du, P.1    Li, Y.2
  • 61
    • 33847080827 scopus 로고    scopus 로고
    • Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
    • 2-s2.0-33847080827 10.1093/protein/gzl053
    • Shen H.-B., Chou K.-C., Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. Protein Engineering, Design and Selection 2007 20 1 39 46 2-s2.0-33847080827 10.1093/protein/gzl053
    • (2007) Protein Engineering, Design and Selection , vol.20 , Issue.1 , pp. 39-46
    • Shen, H.-B.1    Chou, K.-C.2
  • 62
    • 0037249217 scopus 로고    scopus 로고
    • Whole-proteome interaction mining
    • DOI 10.1093/bioinformatics/19.1.125
    • Bock J. R., Gough D. A., Whole-proteome interaction mining. Bioinformatics 2003 19 1 125 135 2-s2.0-0037249217 10.1093/bioinformatics/19.1. 125 (Pubitemid 36150189)
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 125-135
    • Bock, J.R.1    Gough, D.A.2
  • 63
    • 33847260136 scopus 로고    scopus 로고
    • Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    • 2-s2.0-33847260136 10.1002/bip.20640
    • Shen H.-B., Chou K.-C., Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells. Biopolymers 2007 85 3 233 240 2-s2.0-33847260136 10.1002/bip.20640
    • (2007) Biopolymers , vol.85 , Issue.3 , pp. 233-240
    • Shen, H.-B.1    Chou, K.-C.2
  • 64
    • 77956673246 scopus 로고    scopus 로고
    • Predicting the state of cysteines based on sequence information
    • 2-s2.0-77956673246 10.1016/j.jtbi.2010.09.002
    • Guang X., Guo Y., Xiao J., Wang X., Sun J., Xiong W., Li M., Predicting the state of cysteines based on sequence information. Journal of Theoretical Biology 2010 267 3 312 318 2-s2.0-77956673246 10.1016/j.jtbi.2010.09.002
    • (2010) Journal of Theoretical Biology , vol.267 , Issue.3 , pp. 312-318
    • Guang, X.1    Guo, Y.2    Xiao, J.3    Wang, X.4    Sun, J.5    Xiong, W.6    Li, M.7
  • 66
    • 34447298905 scopus 로고    scopus 로고
    • Approximating the multiclass ROC by pairwise analysis
    • DOI 10.1016/j.patrec.2007.05.001, PII S016786550700150X
    • Landgrebe T. C. W., Duin R. P. W., Approximating the multiclass ROC by pairwise analysis. Pattern Recognition Letters 2007 28 13 1747 1758 2-s2.0-34447298905 10.1016/j.patrec.2007.05.001 (Pubitemid 47061487)
    • (2007) Pattern Recognition Letters , vol.28 , Issue.13 , pp. 1747-1758
    • Landgrebe, T.C.W.1    Duin, R.P.W.2
  • 67
    • 28444473876 scopus 로고    scopus 로고
    • International Conference on Machine Learning and Cybernetics (ICMLC '05) August 2005 2-s2.0-28444473876
    • Qin Z.-C., ROC analysis for predictions made by probabilistic classifiers. International Conference on Machine Learning and Cybernetics (ICMLC '05) August 2005 3119 3124 2-s2.0-28444473876
    • ROC Analysis for Predictions Made by Probabilistic Classifiers , pp. 3119-3124
    • Qin, Z.-C.1
  • 68
    • 83655191921 scopus 로고    scopus 로고
    • Cost-conscious comparison of supervised learning algorithms over multiple data sets
    • 2-s2.0-83655191921 10.1016/j.patcog.2011.10.005
    • Ulaş A., Yldz O. T., Alpaydn E., Cost-conscious comparison of supervised learning algorithms over multiple data sets. Pattern Recognition 2012 45 4 1772 1781 2-s2.0-83655191921 10.1016/j.patcog.2011.10.005
    • (2012) Pattern Recognition , vol.45 , Issue.4 , pp. 1772-1781
    • Ulaş, A.1    Yldz, O.T.2    Alpaydn, E.3
  • 69
    • 3042810113 scopus 로고    scopus 로고
    • Hierarchical learning architecture with automatic feature selection for multiclass protein fold classification
    • 2-s2.0-3042810113 10.1109/TNB.2003.820284
    • Huang C.-D., Lin C.-T., Pal N. R., Hierarchical learning architecture with automatic feature selection for multiclass protein fold classification. IEEE Transactions on Nanobioscience 2003 2 4 221 232 2-s2.0-3042810113 10.1109/TNB.2003.820284
    • (2003) IEEE Transactions on Nanobioscience , vol.2 , Issue.4 , pp. 221-232
    • Huang, C.-D.1    Lin, C.-T.2    Pal, N.R.3
  • 70
    • 22544444234 scopus 로고    scopus 로고
    • Protein structure and fold prediction using Tree-Augmented naïve Bayesian classifier
    • DOI 10.1142/S0219720005001302, PII S0219720005001302
    • Chinnasamy A., Sung W.-K., Mittal A., Protein structure and fold prediction using Tree-Augmented naïve Bayesian classifier. Journal of Bioinformatics and Computational Biology 2005 3 4 803 819 2-s2.0-22544444234 10.1142/S0219720005001302 (Pubitemid 41015289)
    • (2005) Journal of Bioinformatics and Computational Biology , vol.3 , Issue.4 , pp. 803-819
    • Chinnasamy, A.1    Sung, W.-K.2    Mittal, A.3
  • 71
    • 13444262436 scopus 로고    scopus 로고
    • Predicting protein-protein interactions using signature products
    • DOI 10.1093/bioinformatics/bth483
    • Martin S., Roe D., Faulon J.-L., Predicting protein-protein interactions using signature products. Bioinformatics 2005 21 2 218 226 2-s2.0-13444262436 10.1093/bioinformatics/bth483 (Pubitemid 40202023)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 218-226
    • Martin, S.1    Roe, D.2    Faulon, J.-L.3
  • 72
    • 34249989677 scopus 로고    scopus 로고
    • Feature selection and combination criteria for improving accuracy in protein structure prediction
    • DOI 10.1109/TNB.2007.897482
    • Lin K.-L., Lin C.-Y., Huang C.-D., Chang H.-M., Yang C.-Y., Lin C.-T., Tang C. Y., Hsu D. F., Feature selection and combination criteria for improving accuracy in protein structure prediction. IEEE Transactions on Nanobioscience 2007 6 2 186 196 2-s2.0-34249989677 10.1109/TNB.2007.897482 (Pubitemid 46883425)
    • (2007) IEEE Transactions on Nanobioscience , vol.6 , Issue.2 , pp. 186-196
    • Lin, K.-L.1    Lin, C.-Y.2    Huang, C.-D.3    Chang, H.-M.4    Yang, C.-Y.5    Lin, C.-T.6    Tang, C.Y.7    Hsu, D.F.8
  • 73
    • 84870215870 scopus 로고    scopus 로고
    • Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
    • 2-s2.0-84870215870 10.1016/j.jtbi.2012.10.033
    • Chen Y.-K., Li K.-B., Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition. Journal of Theoretical Biology 2013 318 1 12 2-s2.0-84870215870 10.1016/j.jtbi.2012.10.033
    • (2013) Journal of Theoretical Biology , vol.318 , pp. 1-12
    • Chen, Y.-K.1    Li, K.-B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.