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Volumn 8542 LNBI, Issue , 2014, Pages 83-94

On optimal read trimming in next generation sequencing and its complexity

Author keywords

Next Generation Sequencing; NP completeness; Polynomial Time Algorithms; Trimming

Indexed keywords

BIOINFORMATICS; CONSTRAINED OPTIMIZATION; TRIMMING;

EID: 84903978332     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-319-07953-0_7     Document Type: Conference Paper
Times cited : (2)

References (13)
  • 1
    • 84861133568 scopus 로고    scopus 로고
    • A computational pipeline for comparative ChIP-seq analyses
    • Bardet, A.F., He, Q., Zeitlinger, J., Stark, A.: A computational pipeline for comparative ChIP-seq analyses. Nature Protocols 7(1), 45-61 (2012)
    • (2012) Nature Protocols , vol.7 , Issue.1 , pp. 45-61
    • Bardet, A.F.1    He, Q.2    Zeitlinger, J.3    Stark, A.4
  • 3
    • 84893443187 scopus 로고    scopus 로고
    • An extensive evaluation of read trimming effects on Illumina NGS data analysis
    • Del Fabbro, C., Scalabrin, S., Morgante, M., Giorgi, F.: An extensive evaluation of read trimming effects on Illumina NGS data analysis. PLoS ONE 8(12), e85024 (2013)
    • (2013) PLoS ONE , vol.8 , Issue.12
    • Del Fabbro, C.1    Scalabrin, S.2    Morgante, M.3    Giorgi, F.4
  • 4
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar, R., Domrachev, M., Lash, A.: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30(1), 207-210 (2002), http://www.ncbi.nlm.nih.gov/geo
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.3
  • 5
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M., Green, P.: Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Research 8(3), 175-185 (1998)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 6
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B., Green, P.: Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Research 8(3), 186-194 (1998)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 7
    • 0021938963 scopus 로고
    • Clustering to minimize the maximum intercluster distance
    • Gonzalez, T.F.: Clustering to minimize the maximum intercluster distance. Theor. Comput. Sci. 38, 293-306 (1985)
    • (1985) Theor. Comput. Sci. , vol.38 , pp. 293-306
    • Gonzalez, T.F.1
  • 8
    • 84874604550 scopus 로고    scopus 로고
    • Hannon Lab: FASTX Toolkit, http://hannonlab.cshl.edu/fastx-toolkit/
    • FASTX Toolkit
  • 9
    • 84884826911 scopus 로고    scopus 로고
    • The next-generation sequencing revolution and its impact on genomics
    • Koboldt,D., Steinberg,K., Larson,D.,Wilson,R.,Mardis,E.R.:The next-generation sequencing revolution and its impact on genomics. Cell 155(1), 27-38 (2013), http://www.sciencedirect.com/science/article/pii/S0092867413011410
    • (2013) Cell , vol.155 , Issue.1 , pp. 27-38
    • Koboldt, D.1    Steinberg, K.2    Larson, D.3    Wilson, R.4    Mardis, E.R.5
  • 10
    • 84886638475 scopus 로고    scopus 로고
    • NCBI - SRA Toolkit, http://eutils.ncbi.nih.gov/Traces/sra/?view=software
    • NCBI - SRA Toolkit
  • 11
    • 84856468953 scopus 로고    scopus 로고
    • NGS QC Toolkit: A toolkit for quality control of next generation sequencing data
    • Patel, R.K., Jain, M.: NGS QC Toolkit: A toolkit for quality control of next generation sequencing data. PLoS ONE 7(2), e30619+ (2012)
    • (2012) PLoS ONE , vol.7 , Issue.2
    • Patel, R.K.1    Jain, M.2
  • 12
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder, R., Edwards, R.: Quality control and preprocessing of metagenomic datasets. Bioinformatics 27(6), 863-864 (2011)
    • (2011) Bioinformatics , vol.27 , Issue.6 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.