-
1
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart JM, Segal E, Koller D, Kim SK: A gene-coexpression network for global discovery of conserved genetic modules. Science 2003, 302:249-255
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
2
-
-
33645098516
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Polacco BJ, Babbitt PC: Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Bioinformatics 2006, 22:723-730
-
(2006)
Bioinformatics
, vol.22
, pp. 723-730
-
-
Polacco, B.J.1
Babbitt, P.C.2
-
3
-
-
0033597176
-
The relationship between protein structure and function: a comprehensive survey with application to the yeast genome
-
Hegyi H, Gerstein M: The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. J Mol Biol 1999, 288:147-164
-
(1999)
J Mol Biol
, vol.288
, pp. 147-164
-
-
Hegyi, H.1
Gerstein, M.2
-
4
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, et al: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 2000, 403:623-627
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
-
6
-
-
0034818556
-
Gene functional classification from heterogeneous data
-
April 22-25, 2001, Montreal S. Istrail, M. Waterman, A. Clark
-
Pavlidis P, Weston J, Cai J, Grundy WN: Gene functional classification from heterogeneous data. In Proceedings of the Fifth Annual International Conference on Computational Biology, April 22-25, 2001, Montreal S. Istrail, M. Waterman, A. Clark 2001, 249-255
-
(2001)
In Proceedings of the Fifth Annual International Conference on Computational Biology
, pp. 249-255
-
-
Pavlidis, P.1
Weston, J.2
Cai, J.3
Grundy, W.N.4
-
7
-
-
0038492417
-
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces Cerevisiae)
-
Troyanskaya O, Dolinski K, Owen A, Altman RDB: A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces Cerevisiae). Proceedings of the National Academy of Sciences of the United States of America 2003, 14:8348-8353
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.14
, pp. 8348-8353
-
-
Troyanskaya, O.1
Dolinski, K.2
Owen, A.3
Altman, R.D.B.4
-
8
-
-
2442674422
-
Kernel-based data fusion and its application to protein function prediction in yeast
-
January 6-10, 2004, Hawaii Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein
-
Lanckriet GR, Deng M, Cristianini N, Jordan MI, Noble WS: Kernel-based data fusion and its application to protein function prediction in yeast. In Proceedings of the Pacific Symposium on Biocomputing, January 6-10, 2004, Hawaii Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein 2004, 300-311
-
(2004)
In Proceedings of the Pacific Symposium on Biocomputing
, pp. 300-311
-
-
Lanckriet, G.R.1
Deng, M.2
Cristianini, N.3
Jordan, M.I.4
Noble, W.S.5
-
9
-
-
85040060802
-
Fast protein classification with multiple networks
-
Shin H, Scholkopf B: Fast protein classification with multiple networks. Bioinformatics 2009, 21(Suppl 1):1159-1165
-
(2009)
Bioinformatics
, vol.21
, pp. 1159-1165
-
-
Shin, H.1
Scholkopf, B.2
-
10
-
-
47549107689
-
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
-
Mostafavi S, Ray D, Warde-Farley D, et al: GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biology 2008, 9(Suppl1):S4
-
(2008)
Genome Biology
, vol.9
, pp. S4
-
-
Mostafavi, S.1
Ray, D.2
Warde-Farley, D.3
-
11
-
-
77954309042
-
Fast integration of heterogeneous data sources for predicting gene function with limited annotation
-
Mostafavi S, Morris Q: Fast integration of heterogeneous data sources for predicting gene function with limited annotation. Bioinformatics, 2010, Volume 26 14:1759-1765
-
(2010)
Bioinformatics
, vol.26
, Issue.14
, pp. 1759-1765
-
-
Mostafavi, S.1
Morris, Q.2
-
12
-
-
47549108100
-
Predicting gene function in a hierarchical context with an ensemble of classifiers
-
Guan Y, Myers C, Hess D, Barutcuoglu Z, Caudy A, et al: Predicting gene function in a hierarchical context with an ensemble of classifiers. Genome Biology 2008, 9(Suppl1):S3
-
(2008)
Genome Biology
, vol.9
, pp. S3
-
-
Guan, Y.1
Myers, C.2
Hess, D.3
Barutcuoglu, Z.4
Caudy, A.5
-
13
-
-
47549098627
-
Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy
-
Kim W, Krumpelman C, Marcotte E: Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy. Genome Biology 2008, 9(Suppl1):S5
-
(2008)
Genome Biology
, vol.9
, pp. S5
-
-
Kim, W.1
Krumpelman, C.2
Marcotte, E.3
-
14
-
-
79959404103
-
The role of indirect connections in gene networks in predicting function
-
Gillis J, Pavlidis P: The role of indirect connections in gene networks in predicting function. Bioinformatics, 2011, Volume 27 13:1860-1866
-
(2011)
Bioinformatics
, vol.27
, Issue.13
, pp. 1860-1866
-
-
Gillis, J.1
Pavlidis, P.2
-
15
-
-
47549104748
-
Combining guilt-byassociation and guilt-by-profiling to predict Saccharomyces cerevisiae gene function
-
Tian W, Zhang L, Tasan M, Gibbons F, King O, et al: Combining guilt-byassociation and guilt-by-profiling to predict Saccharomyces cerevisiae gene function. Genome Biology 2008, 9(Suppl1):S7
-
(2008)
Genome Biology
, vol.9
, pp. S7
-
-
Tian, W.1
Zhang, L.2
Tasan, M.3
Gibbons, F.4
King, O.5
-
16
-
-
33947313355
-
A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data
-
Yao Z, Ruzzo W: A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data. BMC Bioinformatics 2006, 7(Suppl 1):S11
-
(2006)
BMC Bioinformatics
, vol.7
, pp. S11
-
-
Yao, Z.1
Ruzzo, W.2
-
17
-
-
84872559832
-
Gene function prediction using labelled and unlabeled data
-
Zhao XM, Wang Y, Chen L, Aihara K: Gene function prediction using labelled and unlabeled data. BMC Bioinform 2002, 9-57
-
(2002)
BMC Bioinform
, pp. 9-57
-
-
Zhao, X.M.1
Wang, Y.2
Chen, L.3
Aihara, K.4
-
18
-
-
18244386985
-
Prediction of protein function using protein-protein interaction data
-
Deng M, Zhang K, Mehta S, Chen T, Sun F: Prediction of protein function using protein-protein interaction data. In Proceedings of the IEEE Computer Society Bioinformatics Conference, August 14-16, 2002, Standford Markstein M, Xu 2002, 197-206
-
(2002)
In Proceedings of the IEEE Computer Society Bioinformatics Conference, August 14-16, 2002, Standford Markstein M, Xu
, pp. 197-206
-
-
Deng, M.1
Zhang, K.2
Mehta, S.3
Chen, T.4
Sun, F.5
-
20
-
-
47549116997
-
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
-
Pena-Castillo L, Tasan M, Myers C, Lee H, Joshi T, et al: A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biology 2008, 9(Suppl1):S2
-
(2008)
Genome Biology
, vol.9
, pp. S2
-
-
Pena-Castillo, L.1
Tasan, M.2
Myers, C.3
Lee, H.4
Joshi, T.5
-
21
-
-
33645323768
-
Hierarchical multi-label prediction of gene function
-
Barutcuoglu Z, Schapire R, Troyanskaya O: Hierarchical multi-label prediction of gene function. Bioinformatics, 2006, Volume 22 7:830-836
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 830-836
-
-
Barutcuoglu, Z.1
Schapire, R.2
Troyanskaya, O.3
-
24
-
-
33646371466
-
Online passiveaggressive algorithms
-
Crammer K, Dekel O, Keshet J, Shalev-Shwartz S, Singer Y: Online passiveaggressive algorithms. Journal of Machine Learning Research 2006, 7:551-585
-
(2006)
Journal of Machine Learning Research
, vol.7
, pp. 551-585
-
-
Crammer, K.1
Dekel, O.2
Keshet, J.3
Shalev-Shwartz, S.4
Singer, Y.5
-
25
-
-
47549088657
-
Consistent probabilistic output for protein function prediction
-
Obozinski G, Lanckriet G, Grant C, Noble W: Consistent probabilistic output for protein function prediction. Genome Biology 2008, 9:S6
-
(2008)
Genome Biology
, vol.9
, pp. S6
-
-
Obozinski, G.1
Lanckriet, G.2
Grant, C.3
Noble, W.4
-
26
-
-
79952831194
-
True Path Rule Hierarchical Ensembles for Genome-Wide Gene Function Prediction
-
Valentini G: True Path Rule Hierarchical Ensembles for Genome-Wide Gene Function Prediction. IEEE/ACM Transaction on bioinformatics and computational biology, 2011, Volume 8 3:832-847
-
(2011)
IEEE/ACM Transaction on bioinformatics and computational biology
, vol.8
, Issue.3
, pp. 832-847
-
-
Valentini, G.1
-
28
-
-
68249087607
-
Semantic Similarity in Biomedical Ontologies
-
Pesquita C, Faria D, Falca A, Lord P, Couto F: Semantic Similarity in Biomedical Ontologies. PLoS Computational Biology, 2009, Volume 5 7: E1000443
-
(2009)
PLoS Computational Biology
, vol.5
, Issue.7
-
-
Pesquita, C.1
Faria, D.2
Falca, A.3
Lord, P.4
Couto, F.5
-
29
-
-
77951942707
-
GOSemSim: an R package for measuring semantic similarity among GO terms and gene products
-
Yu G, Li F, Qin Y, Bo X, Wu Y, et al: GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics, 2010, Volume 26 7:976-978
-
(2010)
Bioinformatics
, vol.26
, Issue.7
, pp. 976-978
-
-
Yu, G.1
Li, F.2
Qin, Y.3
Bo, X.4
Wu, Y.5
-
30
-
-
84899006908
-
Learning with local and global consistency
-
Vancouver;Sebastian Thrun, Lawrence K. Saul, Bernhard Schölkopf
-
Zhou D, Bousquet O, Lal T, Weston J, Scholkopf B: Learning with local and global consistency. In Proceedings of Advances in Neural Information Processing Systems 16, December 8-13, 2003. Vancouver;Sebastian Thrun, Lawrence K. Saul, Bernhard Schölkopf 2003:321-328
-
(2003)
Proceedings of Advances in Neural Information Processing Systems 16, December 8-13, 2003
, pp. 321-328
-
-
Zhou, D.1
Bousquet, O.2
Lal, T.3
Weston, J.4
Scholkopf, B.5
-
31
-
-
77349119213
-
Predicting gene function using hierarchical multi-label decision tree ensembles
-
Schietgat L, Vens C, Struyf J, Blockeel H, Kocev D, et al: Predicting gene function using hierarchical multi-label decision tree ensembles. BMC Bioinformatics, 2010, Volume 11 2
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.2
-
-
Schietgat, L.1
Vens, C.2
Struyf, J.3
Blockeel, H.4
Kocev, D.5
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