-
1
-
-
0242354129
-
The origin of new genes: glimpses from the young and old
-
10.1038/nrg1204, 14634634
-
Long M, Betran E, Thornton K, Wang W. The origin of new genes: glimpses from the young and old. Nat Rev Genet 2003, 4(11):865-875. 10.1038/nrg1204, 14634634.
-
(2003)
Nat Rev Genet
, vol.4
, Issue.11
, pp. 865-875
-
-
Long, M.1
Betran, E.2
Thornton, K.3
Wang, W.4
-
2
-
-
0032404453
-
You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
-
10.1016/S0168-9525(98)01494-2, 9724962
-
Doolittle WF. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet 1998, 14(8):307-311. 10.1016/S0168-9525(98)01494-2, 9724962.
-
(1998)
Trends Genet
, vol.14
, Issue.8
, pp. 307-311
-
-
Doolittle, W.F.1
-
3
-
-
33644847698
-
The evolution of spliceosomal introns: patterns, puzzles and progress
-
Roy SW, Gilbert W. The evolution of spliceosomal introns: patterns, puzzles and progress. Nat Rev Genet 2006, 7(3):211-221.
-
(2006)
Nat Rev Genet
, vol.7
, Issue.3
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
4
-
-
0034755894
-
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
-
10.1101/gr.188201, 311155, 11591643
-
Meyers BC, Tingey SV, Morgante M. Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res 2001, 11(10):1660-1676. 10.1101/gr.188201, 311155, 11591643.
-
(2001)
Genome Res
, vol.11
, Issue.10
, pp. 1660-1676
-
-
Meyers, B.C.1
Tingey, S.V.2
Morgante, M.3
-
5
-
-
1542513556
-
Mobile elements: drivers of genome evolution
-
10.1126/science.1089670, 15016989
-
Kazazian HH. Mobile elements: drivers of genome evolution. Science 2004, 303(5664):1626-1632. 10.1126/science.1089670, 15016989.
-
(2004)
Science
, vol.303
, Issue.5664
, pp. 1626-1632
-
-
Kazazian, H.H.1
-
6
-
-
3042720475
-
Genome evolution in yeasts
-
10.1038/nature02579, 15229592
-
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, et al. Genome evolution in yeasts. Nature 2004, 430(6995):35-44. 10.1038/nature02579, 15229592.
-
(2004)
Nature
, vol.430
, Issue.6995
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
Durrens, P.4
Casaregola, S.5
Lafontaine, I.6
De Montigny, J.7
Marck, C.8
Neuvéglise, C.9
Talla, E.10
Goffard, N.11
Frangeul, L.12
Aigle, M.13
Anthouard, V.14
Babour, A.15
Barbe, V.16
Barnay, S.17
Blanchin, S.18
Beckerich, J.M.19
Beyne, E.20
Bleykasten, C.21
Boisramé, A.22
Boyer, J.23
Cattolico, L.24
Confanioleri, F.25
De Daruvar, A.26
Despons, L.27
Fabre, E.28
Fairhead, C.29
Ferry-Dumazet, H.30
more..
-
7
-
-
33745736295
-
Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution
-
Dujon B. Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution. Trends Genetics 2006, 22(7):375-387.
-
(2006)
Trends Genetics
, vol.22
, Issue.7
, pp. 375-387
-
-
Dujon, B.1
-
8
-
-
33947156343
-
Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis
-
Jeffries TW, Grigoriev IV, Grimwood J, Laplaza JM, Aerts A, Salamov A, Schmutz J, Lindquist E, Dehal P, Shapiro H, Jin YS, Passoth V, Richardson PM. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nature Biotechnol 2007, 25(3):319-326.
-
(2007)
Nature Biotechnol
, vol.25
, Issue.3
, pp. 319-326
-
-
Jeffries, T.W.1
Grigoriev, I.V.2
Grimwood, J.3
Laplaza, J.M.4
Aerts, A.5
Salamov, A.6
Schmutz, J.7
Lindquist, E.8
Dehal, P.9
Shapiro, H.10
Jin, Y.S.11
Passoth, V.12
Richardson, P.M.13
-
9
-
-
66649105285
-
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
-
10.1038/nature08064, 19465905
-
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, et al. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 2009, 459(7247):657-662. 10.1038/nature08064, 19465905.
-
(2009)
Nature
, vol.459
, Issue.7247
, pp. 657-662
-
-
Butler, G.1
Rasmussen, M.D.2
Lin, M.F.3
Santos, M.A.4
Sakthikumar, S.5
Munro, C.A.6
Rheinbay, E.7
Grabherr, M.8
Forche, A.9
Reedy, J.L.10
-
10
-
-
70349671762
-
Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes
-
10.1128/EC.00110-09, 19666779
-
Frank AC, Wolfe KH. Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes. Eukaryot Cell 2009, 8(10):1521-1531. 10.1128/EC.00110-09, 19666779.
-
(2009)
Eukaryot Cell
, vol.8
, Issue.10
, pp. 1521-1531
-
-
Frank, A.C.1
Wolfe, K.H.2
-
11
-
-
70449427069
-
Hypothesis for heritable, anti-viral immunity in crustaceans and insects
-
10.1186/1745-6150-4-32, 2757015, 19725947
-
Flegel TW. Hypothesis for heritable, anti-viral immunity in crustaceans and insects. Biol Direct 2009, 4:32. 10.1186/1745-6150-4-32, 2757015, 19725947.
-
(2009)
Biol Direct
, vol.4
, pp. 32
-
-
Flegel, T.W.1
-
12
-
-
70349211048
-
The Evolution and Emergence of RNA Viruses
-
New York: Oxford University Press
-
Holmes EC. The Evolution and Emergence of RNA Viruses. 2009, New York: Oxford University Press.
-
(2009)
-
-
Holmes, E.C.1
-
13
-
-
67651215894
-
Suggestions for a nomenclature of endogenous pararetroviral sequences in plants
-
10.1007/s00705-009-0412-y, 19521659
-
Staginnus C, Iskra-Caruana ML, Lockhart B, Hohn T, Richert-Poggeler KR. Suggestions for a nomenclature of endogenous pararetroviral sequences in plants. Arch Virol 2009, 154(7):1189-1193. 10.1007/s00705-009-0412-y, 19521659.
-
(2009)
Arch Virol
, vol.154
, Issue.7
, pp. 1189-1193
-
-
Staginnus, C.1
Iskra-Caruana, M.L.2
Lockhart, B.3
Hohn, T.4
Richert-Poggeler, K.R.5
-
14
-
-
3342978236
-
Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes
-
10.1099/vir.0.79850-0, 15218182
-
Crochu S, Cook S, Attoui H, Charrel RN, De Chesse R, Belhouchet M, Lemasson JJ, de Micco P, de Lamballerie X. Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes. J Gen Virol 2004, 85(Pt 7):1971-1980. 10.1099/vir.0.79850-0, 15218182.
-
(2004)
J Gen Virol
, vol.85
, Issue.PART. 7
, pp. 1971-1980
-
-
Crochu, S.1
Cook, S.2
Attoui, H.3
Charrel, R.N.4
De Chesse, R.5
Belhouchet, M.6
Lemasson, J.J.7
de Micco, P.8
de Lamballerie, X.9
-
15
-
-
34247640648
-
Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes
-
10.1016/j.virol.2006.11.038, 17275871
-
Maori E, Tanne E, Sela I. Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes. Virology 2007, 362(2):342-349. 10.1016/j.virol.2006.11.038, 17275871.
-
(2007)
Virology
, vol.362
, Issue.2
, pp. 342-349
-
-
Maori, E.1
Tanne, E.2
Sela, I.3
-
16
-
-
13144252211
-
Occurrence of a DNA sequence of a non-retro RNA virus in a host plant genome and its expression: evidence for recombination between viral and host RNAs
-
10.1016/j.virol.2004.11.007, 15680426
-
Tanne E, Sela I. Occurrence of a DNA sequence of a non-retro RNA virus in a host plant genome and its expression: evidence for recombination between viral and host RNAs. Virology 2005, 332(2):614-622. 10.1016/j.virol.2004.11.007, 15680426.
-
(2005)
Virology
, vol.332
, Issue.2
, pp. 614-622
-
-
Tanne, E.1
Sela, I.2
-
17
-
-
58449125226
-
Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration
-
10.1126/science.1167375, 19150848
-
Geuking MB, Weber J, Dewannieux M, Gorelik E, Heidmann T, Hengartner H, Zinkernagel RM, Hangartner L. Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration. Science 2009, 323(5912):393-396. 10.1126/science.1167375, 19150848.
-
(2009)
Science
, vol.323
, Issue.5912
, pp. 393-396
-
-
Geuking, M.B.1
Weber, J.2
Dewannieux, M.3
Gorelik, E.4
Heidmann, T.5
Hengartner, H.6
Zinkernagel, R.M.7
Hangartner, L.8
-
18
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
10.1038/nrg2386, 18591983
-
Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet 2008, 9(8):605-618. 10.1038/nrg2386, 18591983.
-
(2008)
Nat Rev Genet
, vol.9
, Issue.8
, pp. 605-618
-
-
Keeling, P.J.1
Palmer, J.D.2
-
19
-
-
30344471824
-
Do different surrogate methods detect lateral genetic transfer events of different relative ages?
-
10.1016/j.tim.2005.11.004, 16356716
-
Ragan MA, Harlow TJ, Beiko RG. Do different surrogate methods detect lateral genetic transfer events of different relative ages?. Trends Microbiol 2006, 14(1):4-8. 10.1016/j.tim.2005.11.004, 16356716.
-
(2006)
Trends Microbiol
, vol.14
, Issue.1
, pp. 4-8
-
-
Ragan, M.A.1
Harlow, T.J.2
Beiko, R.G.3
-
20
-
-
0035943134
-
On surrogate methods for detecting lateral gene transfer
-
10.1111/j.1574-6968.2001.tb10755.x, 11470360
-
Ragan MA. On surrogate methods for detecting lateral gene transfer. FEMS Microbiol Lett 2001, 201(2):187-191. 10.1111/j.1574-6968.2001.tb10755.x, 11470360.
-
(2001)
FEMS Microbiol Lett
, vol.201
, Issue.2
, pp. 187-191
-
-
Ragan, M.A.1
-
21
-
-
0035927649
-
Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
-
10.1038/35082058, 11418856
-
Stanhope MJ, Lupas A, Italia MJ, Koretke KK, Volker C, Brown JR. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature 2001, 411(6840):940-944. 10.1038/35082058, 11418856.
-
(2001)
Nature
, vol.411
, Issue.6840
, pp. 940-944
-
-
Stanhope, M.J.1
Lupas, A.2
Italia, M.J.3
Koretke, K.K.4
Volker, C.5
Brown, J.R.6
-
22
-
-
68349122577
-
Retention of the virus-derived sequences in the nuclear genome of grapevine as a potential pathway to virus resistance
-
10.1186/1745-6150-4-21, 2714080, 19558678
-
Bertsch C, Beuve M, Dolja VV, Wirth M, Pelsy F, Herrbach E, Lemaire O. Retention of the virus-derived sequences in the nuclear genome of grapevine as a potential pathway to virus resistance. Biol Direct 2009, 4:21. 10.1186/1745-6150-4-21, 2714080, 19558678.
-
(2009)
Biol Direct
, vol.4
, pp. 21
-
-
Bertsch, C.1
Beuve, M.2
Dolja, V.V.3
Wirth, M.4
Pelsy, F.5
Herrbach, E.6
Lemaire, O.7
-
23
-
-
74549190567
-
The Ustilago maydis viruses
-
Amsterdam: Elsevier, Mahy BWJ, van Regenmortel MHV, 3
-
Bruenn J. The Ustilago maydis viruses. Encyclopedia of Virology 2008, 5:214-219. Amsterdam: Elsevier, Mahy BWJ, van Regenmortel MHV, 3.
-
(2008)
Encyclopedia of Virology
, vol.5
, pp. 214-219
-
-
Bruenn, J.1
-
24
-
-
64049094506
-
Aphids acquired symbiotic genes via lateral gene transfer
-
10.1186/1741-7007-7-12, 2662799, 19284544
-
Nikoh N, Nakabachi A. Aphids acquired symbiotic genes via lateral gene transfer. BMC Biol 2009, 7:12. 10.1186/1741-7007-7-12, 2662799, 19284544.
-
(2009)
BMC Biol
, vol.7
, pp. 12
-
-
Nikoh, N.1
Nakabachi, A.2
-
25
-
-
0036785914
-
L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism
-
10.1038/nsb844, 12244300
-
Naitow H, Tang J, Canady M, Wickner RB, Johnson JE. L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism. Nat Struct Biol 2002, 9(10):725-728. 10.1038/nsb844, 12244300.
-
(2002)
Nat Struct Biol
, vol.9
, Issue.10
, pp. 725-728
-
-
Naitow, H.1
Tang, J.2
Canady, M.3
Wickner, R.B.4
Johnson, J.E.5
-
26
-
-
14744304265
-
The structural basis of recognition and removal of cellular mRNA 7-methyl G 'caps' by a viral capsid protein: a unique viral response to host defense
-
10.1002/jmr.724, 15597333
-
Tang J, Naitow H, Gardner NA, Kolesar A, Tang L, Wickner RB, Johnson JE. The structural basis of recognition and removal of cellular mRNA 7-methyl G 'caps' by a viral capsid protein: a unique viral response to host defense. J Mol Recognit 2005, 18(2):158-168. 10.1002/jmr.724, 15597333.
-
(2005)
J Mol Recognit
, vol.18
, Issue.2
, pp. 158-168
-
-
Tang, J.1
Naitow, H.2
Gardner, N.A.3
Kolesar, A.4
Tang, L.5
Wickner, R.B.6
Johnson, J.E.7
-
27
-
-
0031936368
-
Origin, adaptation and evolutionary pathways of fungal viruses
-
10.1023/A:1007966229595, 9562896
-
Ghabrial SA. Origin, adaptation and evolutionary pathways of fungal viruses. Virus Genes 1998, 16(1):119-131. 10.1023/A:1007966229595, 9562896.
-
(1998)
Virus Genes
, vol.16
, Issue.1
, pp. 119-131
-
-
Ghabrial, S.A.1
-
28
-
-
0018163456
-
No homology between double-stranded RNA and nuclear DNA of yeast
-
525824, 366175
-
Hastie ND, Brennan V, Bruenn J. No homology between double-stranded RNA and nuclear DNA of yeast. J Virol 1978, 28:1002-1005. 525824, 366175.
-
(1978)
J Virol
, vol.28
, pp. 1002-1005
-
-
Hastie, N.D.1
Brennan, V.2
Bruenn, J.3
-
29
-
-
56249137708
-
Totiviruses
-
Academic Press, BWJ Mahy, van Regenmortel MHV, 3
-
Ghabrial S. Totiviruses. Encyclopedia of Virology 2008, 5:163-174. Academic Press, BWJ Mahy, van Regenmortel MHV, 3.
-
(2008)
Encyclopedia of Virology
, vol.5
, pp. 163-174
-
-
Ghabrial, S.1
-
30
-
-
0024307668
-
Overlapping genes in a yeast dsRNA virus
-
250995, 2668562
-
Diamond ME, Dowhanick JJ, Nemeroff ME, Pietras DF, Tu C-L, Bruenn JA. Overlapping genes in a yeast dsRNA virus. J Virol 1989, 63:3983-3990. 250995, 2668562.
-
(1989)
J Virol
, vol.63
, pp. 3983-3990
-
-
Diamond, M.E.1
Dowhanick, J.J.2
Nemeroff, M.E.3
Pietras, D.F.4
Tu, C.-.L.5
Bruenn, J.A.6
-
31
-
-
0026598885
-
Ribosomal frameshifting requires a pseudoknot in the yeast double-stranded RNA virus
-
240802, 1731118
-
Tzeng T-H, Tu C-L, Bruenn JA. Ribosomal frameshifting requires a pseudoknot in the yeast double-stranded RNA virus. J Virol 1992, 66(2):999-1006. 240802, 1731118.
-
(1992)
J Virol
, vol.66
, Issue.2
, pp. 999-1006
-
-
Tzeng, T.-.H.1
Tu, C.-.L.2
Bruenn, J.A.3
-
32
-
-
0034995306
-
The H1 double-stranded RNA genome of Ustilago maydis virus-H1 encodes a polyprotein that contains structural motifs for capsid polypeptide, papain-like protease, and RNA-dependent RNA polymerase
-
10.1016/S0168-1702(01)00250-7, 11410317
-
Kang J, Wu J, Bruenn JA, Park C. The H1 double-stranded RNA genome of Ustilago maydis virus-H1 encodes a polyprotein that contains structural motifs for capsid polypeptide, papain-like protease, and RNA-dependent RNA polymerase. Virus Res 2001, 76(2):183-189. 10.1016/S0168-1702(01)00250-7, 11410317.
-
(2001)
Virus Res
, vol.76
, Issue.2
, pp. 183-189
-
-
Kang, J.1
Wu, J.2
Bruenn, J.A.3
Park, C.4
-
33
-
-
74549216002
-
Evolution of human-pathogenic fungi: phylogenies and species
-
Washington D.C.: ASM press, Heitman J, Filler SG, Edwards JE Jr, Mitchell AP
-
Taylor JW. Evolution of human-pathogenic fungi: phylogenies and species. Molecular Principles of Fungal Pathogenesis 2006, 113-132. Washington D.C.: ASM press, Heitman J, Filler SG, Edwards JE Jr, Mitchell AP.
-
(2006)
Molecular Principles of Fungal Pathogenesis
, pp. 113-132
-
-
Taylor, J.W.1
-
34
-
-
58149507192
-
Effects of retroviruses on host genome function
-
10.1146/annurev.genet.42.110807.091501, 18694346
-
Jern P, Coffin JM. Effects of retroviruses on host genome function. Annu Rev Genet 2008, 42:709-732. 10.1146/annurev.genet.42.110807.091501, 18694346.
-
(2008)
Annu Rev Genet
, vol.42
, pp. 709-732
-
-
Jern, P.1
Coffin, J.M.2
-
35
-
-
18944382213
-
Happy together: the life and times of Ty retrotransposons and their hosts
-
10.1159/000084940, 16093660
-
Lesage P, Todeschini AL. Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 2005, 110(1-4):70-90. 10.1159/000084940, 16093660.
-
(2005)
Cytogenet Genome Res
, vol.110
, Issue.1-4
, pp. 70-90
-
-
Lesage, P.1
Todeschini, A.L.2
-
36
-
-
0027457734
-
Elimination of L-A double-stranded RNA virus of Saccharomyces cerevisiae by expression of gag and gag-pol from L-A cDNA clone
-
237600, 8474174
-
Valle RP, Wickner RB. Elimination of L-A double-stranded RNA virus of Saccharomyces cerevisiae by expression of gag and gag-pol from L-A cDNA clone. J Virol 1993, 67(5):2764-2771. 237600, 8474174.
-
(1993)
J Virol
, vol.67
, Issue.5
, pp. 2764-2771
-
-
Valle, R.P.1
Wickner, R.B.2
-
37
-
-
0028803060
-
Interference with replication of two double-stranded RNA viruses by production of N-terminal fragments of capsid polypeptides
-
10.1006/viro.1995.9938, 8525618
-
Yao W, Bruenn JA. Interference with replication of two double-stranded RNA viruses by production of N-terminal fragments of capsid polypeptides. Virology 1995, 214:215-221. 10.1006/viro.1995.9938, 8525618.
-
(1995)
Virology
, vol.214
, pp. 215-221
-
-
Yao, W.1
Bruenn, J.A.2
-
38
-
-
0031609324
-
Mechanisms of resistance: expression of coat protein
-
Reimann-Philipp U. Mechanisms of resistance: expression of coat protein. Methods Mol Biol 1998, 81:521-532.
-
(1998)
Methods Mol Biol
, vol.81
, pp. 521-532
-
-
Reimann-Philipp, U.1
-
39
-
-
0018070216
-
The molecular weight of yeast P1 double-stranded RNA
-
Holm CA, Oliver SG, Newman AM, Holland LE, McLaughlin CS, Wagner EK, Warner RC. The molecular weight of yeast P1 double-stranded RNA. J Biol Chem 1978, 253:8332-8336.
-
(1978)
J Biol Chem
, vol.253
, pp. 8332-8336
-
-
Holm, C.A.1
Oliver, S.G.2
Newman, A.M.3
Holland, L.E.4
McLaughlin, C.S.5
Wagner, E.K.6
Warner, R.C.7
-
40
-
-
0013916581
-
Purification and properties of the replicative intermediate of the RNA bacteriophage R17
-
10.1073/pnas.55.6.1504, 224351, 5227669
-
Franklin RM. Purification and properties of the replicative intermediate of the RNA bacteriophage R17. Proc Natl Acad Sci USA 1966, 55:1504-1511. 10.1073/pnas.55.6.1504, 224351, 5227669.
-
(1966)
Proc Natl Acad Sci USA
, vol.55
, pp. 1504-1511
-
-
Franklin, R.M.1
-
41
-
-
0035783048
-
Purification, crystallization, and preliminary X-ray analysis of L-A: a dsRNA yeast virus
-
10.1006/jsbi.2001.4371, 11562160
-
Naitow H, Canady MA, Lin T, Wickner RB, Johnson JE. Purification, crystallization, and preliminary X-ray analysis of L-A: a dsRNA yeast virus. J Struct Biol 2001, 135(1):1-7. 10.1006/jsbi.2001.4371, 11562160.
-
(2001)
J Struct Biol
, vol.135
, Issue.1
, pp. 1-7
-
-
Naitow, H.1
Canady, M.A.2
Lin, T.3
Wickner, R.B.4
Johnson, J.E.5
-
42
-
-
46249095233
-
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
-
10.1126/science.1158395, 18566285
-
Loytynoja A, Goldman N. Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 2008, 320(5883):1632-1635. 10.1126/science.1158395, 18566285.
-
(2008)
Science
, vol.320
, Issue.5883
, pp. 1632-1635
-
-
Loytynoja, A.1
Goldman, N.2
-
43
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
10.1080/10635150802429642, 18853362
-
Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 2008, 57(5):758-771. 10.1080/10635150802429642, 18853362.
-
(2008)
Syst Biol
, vol.57
, Issue.5
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
44
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
10.1093/bioinformatics/btg180, 12912839
-
Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19(12):1572-1574. 10.1093/bioinformatics/btg180, 12912839.
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
45
-
-
57649209055
-
Assessing the performance of single-copy genes for recovering robust phylogenies
-
10.1080/10635150802306527, 18709599
-
Aguileta G, Marthey S, Chiapello H, Lebrun MH, Rodolphe F, Fournier E, Gendrault-Jacquemard A, Giraud T. Assessing the performance of single-copy genes for recovering robust phylogenies. Syst Biol 2008, 57(4):613-627. 10.1080/10635150802306527, 18709599.
-
(2008)
Syst Biol
, vol.57
, Issue.4
, pp. 613-627
-
-
Aguileta, G.1
Marthey, S.2
Chiapello, H.3
Lebrun, M.H.4
Rodolphe, F.5
Fournier, E.6
Gendrault-Jacquemard, A.7
Giraud, T.8
-
46
-
-
3242795999
-
An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data
-
10.1093/molbev/msh156, 15140947
-
Taylor DJ, Piel WH. An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data. Mol Biol Evol 2004, 21(8):1534-1537. 10.1093/molbev/msh156, 15140947.
-
(2004)
Mol Biol Evol
, vol.21
, Issue.8
, pp. 1534-1537
-
-
Taylor, D.J.1
Piel, W.H.2
-
47
-
-
38849160068
-
Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes
-
10.1101/gr.7105007, 2099600, 17989260
-
Rasmussen MD, Kellis M. Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes. Genome Res 2007, 17(12):1932-1942. 10.1101/gr.7105007, 2099600, 17989260.
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1932-1942
-
-
Rasmussen, M.D.1
Kellis, M.2
-
48
-
-
57649207907
-
FUNYBASE: a FUNgal phYlogenomic dataBASE
-
10.1186/1471-2105-9-456, 2600828, 18954438
-
Marthey S, Aguileta G, Rodolphe F, Gendrault A, Giraud T, Fournier E, Lopez-Villavicencio M, Gautier A, Lebrun MH, Chiapello H. FUNYBASE: a FUNgal phYlogenomic dataBASE. Bmc Bioinformatics 2008, 9:456. 10.1186/1471-2105-9-456, 2600828, 18954438.
-
(2008)
Bmc Bioinformatics
, vol.9
, pp. 456
-
-
Marthey, S.1
Aguileta, G.2
Rodolphe, F.3
Gendrault, A.4
Giraud, T.5
Fournier, E.6
Lopez-Villavicencio, M.7
Gautier, A.8
Lebrun, M.H.9
Chiapello, H.10
-
49
-
-
68049142320
-
Multiple alignment of DNA sequences with MAFFT
-
full_text, 19378139
-
Katoh K, Asimenos G, Toh H. Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol 2009, 537:39-64. full_text, 19378139.
-
(2009)
Methods Mol Biol
, vol.537
, pp. 39-64
-
-
Katoh, K.1
Asimenos, G.2
Toh, H.3
-
50
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
10.1080/10635150701472164, 17654362
-
Talavera G, Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56(4):564-577. 10.1080/10635150701472164, 17654362.
-
(2007)
Syst Biol
, vol.56
, Issue.4
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
51
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092, 17488738
-
Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092, 17488738.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
52
-
-
0034923337
-
Disparity index: a simple statistic to measure and test the homogeneity of substitution patterns between molecular sequences
-
1461708, 11454778
-
Kumar S, Gadagkar SR. Disparity index: a simple statistic to measure and test the homogeneity of substitution patterns between molecular sequences. Genetics 2001, 158(3):1321-1327. 1461708, 11454778.
-
(2001)
Genetics
, vol.158
, Issue.3
, pp. 1321-1327
-
-
Kumar, S.1
Gadagkar, S.R.2
-
53
-
-
0034748359
-
Evaluation of methods for determination of a reconstructed history of gene sequence evolution
-
Liberles DA. Evaluation of methods for determination of a reconstructed history of gene sequence evolution. Mol Biol Evol 2001, 18(11):2040-2047.
-
(2001)
Mol Biol Evol
, vol.18
, Issue.11
, pp. 2040-2047
-
-
Liberles, D.A.1
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