Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides)

PLoS ONE

Volumn 9, Issue 6, 2014, Pages

  Ouyang, Shuhong ^a   Zhang, Dong ^a   Han, Jun ^a,b   Zhao, Xiaojie ^a   Cui, Yu ^a   Song, Wei ^a,c   Huo, Naxin ^d   Liang, Yong ^a   Xie, Jingzhong ^a   Wang, Zhenzhong ^a   Wu, Qiuhong ^a   Chen, Yong Xing ^a   Lu, Ping ^a   Zhang, De Yun ^a   Wang, Lili ^a   Sun, Hua ^e   Yang, Tsomin ^a   Keeble Gagnere, Gabriel ^f   Appels, Rudi ^f   Doležel, Jaroslav ^g   Ling, Hong Qing ^e   Luo, Mingcheng ^h   Gu, Yongqiang ^d   Sun, Qixin ^a   Liu, Zhiyong ^a   more..

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b BEIJING UNIVERSITY OF AGRICULTURE   (China)

^c INSTITUTE OF PLANT AND ENVIRONMENT PROTECTION   (China)

^d WESTERN REGIONAL RESEARCH CENTER   (United States)

^e INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^f MURDOCH UNIVERSITY   (Australia)

^g INSTITUTE OF EXPERIMENTAL BOTANY   (Czech Republic)

^h UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BRACHYPODIUM; BULKED SEGREGANT ANALYSIS; CHROMOSOME 1; CHROMOSOME 10; CHROMOSOME 6; CHROMOSOME ARM; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; DNA MARKER; DNA SEQUENCE; EMMER; EXPRESSED SEQUENCE TAG; GENE LIBRARY; GENE LOCUS; GENE PROBE; GENETIC DISTANCE; GENETIC LINKAGE; HEXAPLOIDY; MATRIX ATTACHMENT REGION; MLIW172 GENE; NUCLEOTIDE SEQUENCE; PLANT GENE; POWDERY MILDEW; RICE; SIMPLE SEQUENCE REPEAT; SORGHUM; TRITICUM DICOCCOIDES; TRITICUM DURUM; TRITICUM URARTU; WHEAT; ASCOMYCETES; CHROMOSOME MAP; DISEASE RESISTANCE; GENETICS; MICROBIOLOGY; PLANT DISEASE; POLYPLOIDY;

ASCOMYCOTA; CHROMOSOME MAPPING; DISEASE RESISTANCE; GENES, PLANT; PLANT DISEASES; POLYPLOIDY; TRITICUM;

EID: 84903528897     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0100160     Document Type: Article

References (70)

1. Everts KL, Leath S, Finney PL (2001) Impact of powdery mildew and leaf rust on milling and baking quality of soft red winter wheat. Plant Dis 85: 423-429 (Pubitemid 32247791)
2. Mohler V, Bauer C, Schweizer G, Kempf H, Hartl L (2013) Pm50: a new powdery mildew resistance gene in common wheat derived from cultivated emmer. J Appl Genet 54: 259-263
3. McIntosh RA, Yamazaki Y, Dubcovsky J, Rogers J, Morris C, et al. (2013) Catalogue of gene symbols for wheat. 12th International Wheat Genetics Symposium. Yokohama, Japan.
4. Xiao M, Song F, Jiao J, Wang X, Xu H, et al. (2013) Identification of the gene Pm47 on chromosome 7BS conferring resistance to powdery mildew in the Chinese wheat landrace Hongyanglazi. Theor Appl Genet 126: 1397-1403
5. Nevo E, Korol AB, Beiles A, Fahima T (2002) Evolution of wild emmer and wheat improvement: population genetics, genetic resources, and genome organization of wheat's progenitor, Triticum dicoccoides. Springer, Berlin.
6. Ben-David R, Xie W, Peleg Z, Saranga Y, Dinoor A, et al. (2010) Identification and mapping of PmG16, a powdery mildew resistance gene derived from wild emmer wheat. Theor Appl Genet 121: 499-510
7. Liu ZJ, Zhu J, Cui Y, Liang Y, Wu H, et al. (2012) Identification and comparative mapping of a powdery mildew resistance gene derived from wild emmer (Triticum turgidum var. dicoccoides) on chromosome 2BS. Theor Appl Genet 124: 1041-1049
8. Xie W, Ben-David R, Zeng B, Distelfeld A, Roder MS, et al. (2012) Identification and characterization of a novel powdery mildew resistance gene PmG3M derived from wild emmer wheat, Triticum dicoccoides. Theor Appl Genet 124: 911-922
9. Xue F, Ji W, Wang C, Zhang H, Yang B (2012) High-density mapping and marker development for the powdery mildew resistance gene PmAS846 derived from wild emmer wheat (Triticum turgidum var. dicoccoides). Theor Appl Genet 124: 1549-1560
10. Li N, Wen Z, Wang J, Fu BS, Liu J, et al. (2013) Transfer and mapping of a gene conferring powdery mildew resistance at later growth stages in a tetraploid wheat accession. Mol Breeding (Online 10.1007/s11032-013-9983-0)
11. Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, et al. (2004) A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168: 701-712 (Pubitemid 39491450)
12. Goyal A, Bandopadhyay R, Sourdille P, Endo TR, Balyan HS, et al. (2005) Physical molecular maps of wheat chromosomes. Funct Integr Genomic 5: 260-263 (Pubitemid 41435177)
13. Gupta PK, Mir RR, Mohan A, Kumar J (2008) Wheat genomics: present status and future prospects. International Journal of Plant Genomics 2008: 896451
14. Peng JH, Lapitan NL (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomic 5: 80-96 (Pubitemid 40425089)
15. Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, et al. (2012) Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491: 705-710
16. Jia J, Zhao S, Kong X, Li Y, Zhao G, et al. (2013) Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496: 91-95
17. Ling HQ, Zhao S, Liu D, Wang J, Sun H, et al. (2013) Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496: 87-90
18. Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, et al. (2012) Whole genome profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome. BMC Genomics 13: 47
19. Chantret N, Salse J, Sabot F, Bellec A, Laubin B, et al. (2008) Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species. J Mol Evol 66: 138-150
20. Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, et al. (2009a) The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556
21. Quraishi UM, Murat F, Abrouk M, Pont C, Confolent C, et al. (2011) Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). FunctIntegr Genomic 11: 71-83
22. Salse J, Bolot S, Throude M, Jouffe V, Piegu B, et al. (2008) Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution. Plant Cell 20: 11-24 (Pubitemid 352844030)
23. Abrouk M, Murat F, Pont C, Messing J, Jackson S, et al. (2010) Palaeogenomics of plants: synteny-based modelling of extinct ancestors. Trends Plant Sci 15: 479-487
24. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800
25. International Brachypodium Initiative (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768
26. Dong L, Huo N, Wang Y, Deal K, Luo MC, et al. (2012) Exploring the diploid wheat ancestral A genome through sequence comparison at the high-molecular-weight glutenin locus region. Mol Genet Genomics 287: 855-866
27. Huo N, Vogel JP, Lazo GR, You FM, Ma Y, et al. (2009) Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat. Plant Mol Biol 70: 47-61
28. Wang J, Luo MC, Chen Z, You FM, Wei Y, et al. (2013) Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat. New Phytol 198: 925-937
29. Akhunov ED, Sehgal S, Liang H, Wang S, Akhunova AR, et al. (2013) Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiol 161: 252-265
30. Luo MC, Gu YQ, You FM, Deal KR, Ma Y, et al. (2013) A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc Natl Acad Sci USA 110: 7940-7945
31. Pont C, Murat F, Guizard S, Flores R, Foucrier S, et al. (2013) Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J 76: 1030-1044
32. Xie CJ, Sun QX, Yang ZM (2003) Resistance of wild emmers from Israel to wheat rusts and powdery mildew at seedling stage. J Triticeae Crops 23: 39-42
33. Allen GC, Flores-Vergara MA, Krasnyanski S, Kumar S, Thompson WF (2006) A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nat Protoc 1: 2320-2325
34. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease-resistance genes by Bulked Segregant Analysis - a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88: 9828-9832 (Pubitemid 21915727)
35. Yao G, Zhang J, Yang L, Xu H, Jiang Y, et al. (2007) Genetic mapping of two powdery mildew resistance genes in einkorn (Triticum monococcum L.) accessions. Theor Appl Genet 114: 351-358 (Pubitemid 46018220)
36. Ma ZQ, Sorrells ME, Tanksley SD (1994) RFLP markers linked to powdery mildew resistance genes Pm1, Pm2, Pm3, and Pm4 in wheat. Genome 37: 871-875
37. Neu C, Stein N, Keller B (2002) Genetic mapping of the Lr20-Pm1 resistance locus reveals suppressed recombination on chromosome arm 7AL in hexaploid wheat. Genome 45: 737-744 (Pubitemid 35368859)
38. Lazo GR, Chao S, Hummel DD, Edwards H, Crossman CC, et al. (2004) Development of an expressed sequence tag (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for a 16,000-locus bin-delineated map. Genetics 168: 585-593 (Pubitemid 39491441)
39. Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, et al. (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res 35:D883-887 (Pubitemid 46056327)
40. Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, et al. (2012) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 40: 1178-1186
41. Liu Q, Scaringe WA, Sommer SS (2000) Discrete mobility of single-stranded DNA in non-denaturing gel electrophoresis. Nucleic Acids Research 28: 940-943 (Pubitemid 30085320)
42. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, et al. (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181
43. Liu RH, Meng JL (2003) MapDraw: a Microsoft Excel macro for drawing genetic linkage maps based on given genetic linkage data. Hereditas (Beijing) 25: 317-321
44. Cenci A, Chantret N, Kong X, Gu Y, Anderson OD, et al. (2003) Construction and characterization of a half million clone BAC library of durum wheat (Triticum turgidum ssp. durum). Theor Appl Genet. 107: 931-939 (Pubitemid 37231757)
45. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH, et al. (1998) A microsatellite map of wheat. Genetics 149: 2007-2023 (Pubitemid 28375968)
46. Singrün CH, Hsam SLK, Hartl L, Zeller FJ, Mohler V (2003) Powdery mildew resistance gene Pm22 in cultivar Virest is a member of the complex Pm1 locus in common wheat (Triticum aestivum L. em Thell.). Theor Appl Genet 106: 1420-1424 (Pubitemid 36689296)
47. Hossain KG, Kalavacharla V, Lazo GR, Hegstad J, Wentz MJ, et al. (2004) A chromosome bin map of 2148 expressed sequence tag loci of wheat homoeologous group 7. Genetics 168: 687-699 (Pubitemid 39491449)
48. Zhang X, Han D, Zeng Q, Duan Y, Yuan F, et al. (2013) Fine mapping of wheat stripe rust resistance gene Yr26 based on collinearity of wheat with Brachypodium distachyon and rice. PloS ONE 8:e57885
49. You FM, Huo N, Gu YQ, Lazo GR, Dvorak J, et al. (2009) ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intronflanking PCR primer design and its application in wheat SNP discovery. BMC Bioinformatics 10: 331
50. You FM, Huo N, Gu YQ, Luo MC, Ma Y, et al. (2008) BatchPrimer3: a high throughput web application for PCR and sequencing primer design. BMC Bioinformatics 9: 253
51. Sears ER, Briggle LW (1969) Mapping gene Pm1 for resistance to Erysiphe Graminis f. sp. tritici on chromosome 7A of wheat. Crop Sci 9: 96-&
52. Srnić G, Murphy JP, Lyerly JH, Leath S, Marshall DS (2005) Inheritance and chromosomal assignment of powdery mildew resistance genes in two winter wheat germplasm lines. Crop Sci 45: 1578-1586 (Pubitemid 41040622)
53. Miranda LM, Perugini L, Srnic G, Brown-Guedira G, Marshall D, et al. (2007) Genetic mapping of a Triticum monococcum -derived powdery mildew resistance gene in common wheat. Crop Sci 47: 2323-2329 (Pubitemid 351267932)
54. Chhuneja P, Kumar K, Stirnweis D, Hurni S, Keller B, et al. (2012) Identification and mapping of two powdery mildew resistance genes in Triticum boeoticum L. Theor Appl Genet. 124: 1051-1058
55. Perugini LD, Murphy JP, Marshall D, Brown-Guedira G (2008) Pm37, a new broadly effective powdery mildew resistance gene from Triticum timopheevii. Theor Appl Genet 116: 417-425
56. Qiu YC, Zhou RH, Kong XY, Zhang SS, Jia JZ (2005) Microsatellite mapping of a Triticum urartu Tum. derived powdery mildew resistance gene transferred to common wheat (Triticum aestivum L.). Theor Appl Genet 111: 1524-1531 (Pubitemid 41618653)
57. Maxwell JJ, Lyerly JH, Cowger C, Marshall D, Brown-Guedira G, et al. (2009) MlAG12: a Triticum timopheevii-derived powdery mildew resistance gene in common wheat on chromosome 7AL. Theor Appl Genet 119: 1489-1495
58. Ji XL, Xie CJ, Ni ZF, Yang TM, Nevo E, et al. (2008) Identification and genetic mapping of a powdery mildew resistance gene in wild emmer (Triticum dicoccoides) accession IW72 from Israel. Euphytica 159: 385-390
59. Schneider DM, Heun M, Fishbeck G (1991) Inheritance of the powdery mildew resistance gene Pm9 in relation to Pm1 and Pm2 of wheat. Plant Breeding 107: 161-164
60. Singrün C, Hsam SL, Zeller FJ, Wenzel G, Mohler V (2004) Localization of a novel recessive powdery mildew resistance gene from common wheat line RD30 in the terminal region of chromosome 7AL. Theor Appl Genet 109: 210-214 (Pubitemid 38908568)
61. Erayman M, Sandhu D, Sidhu D, Dilbirligi M, Baenziger PS, et al. (2004) Demarcating the gene-rich regions of the wheat genome. Nucleic Acids Res 32: 3546-3565 (Pubitemid 39157704)
62. Wu H, Qin J, Han J, Zhao X, Ouyang S, Liang Y, et al. (2013) Comparative high-resolution mapping of the wax inhibitors Iw1 and Iw2 in hexaploid wheat. PLoS ONE 8(12): e84691. doi:10.1371/journal.pone.0084691
63. Bossolini E, Wicker T, Knobel PA, Keller B (2007) Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation. Plant J 49: 704-717 (Pubitemid 46233087)
64. Guyot R, Yahiaoui N, Feuillet C, Keller B (2004) In silico comparative analysis reveals a mosaic conservation of genes within a novel colinear region in wheat chromosome 1AS and rice chromosome 5S. Funct Integr Genomics 4: 47-58 (Pubitemid 41166589)
65. Yahiaoui N, Srichumpa P, Dudler R, Keller B (2004) Genome analysis at different ploidy levels allows cloning of the powdery mildew resistance gene Pm3b from hexaploid wheat. Plant J 37: 528-538 (Pubitemid 38258774)
66. Periyannan S, Moore J, Ayliffe M, Bansal U, Wang X, et al. (2013) The gene Sr33, an ortholog of barley Mla genes, encodes resistance to wheat stem rust race Ug99. Science 341: 786-788
67. Cloutier S, McCallum BD, Loutre C, Banks TW, Wicker T, et al. (2007) Leaf rust resistance gene Lr1, isolated from bread wheat (Triticum aestivum L.) is a member of the large psr567 gene family. Plant Mol Biol 65: 93-106
68. Qiu JW, Schürch AC, Yahiaoui N, Dong LL, Fan HJ, et al. (2007) Physical mapping and identification of a candidate for the leaf rust resistance gene Lr1 of wheat. Theor Appl Genet 115: 159-168 (Pubitemid 47012420)
69. Feuillet C, Travella S, Stein N, Albar L, Nublat A, et al. (2003) Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome. Proc Natl Acad Sci USA 100: 15253-15258 (Pubitemid 37518048)
70. Huang L, Brooks SA, Li W, Fellers JP, Trick HN, et al. (2003) Map-based cloning of leaf rust resistance gene Lr21 from the large and polyploid genome of bread wheat. Genetics 164: 655-664. (Pubitemid 36773502)