Fluctuation of Dof1/Dof2 expression ratio under the influence of varying nitrogen and light conditions: Involvement in differential regulation of nitrogen metabolism in two genotypes of finger millet (Eleusine coracana L.)

Gene

Volumn 546, Issue 2, 2014, Pages 327-335

  Gupta, Supriya ^a   Gupta, Sanjay Mohan ^b   Gupta, Alok Kumar ^a   Gaur, Vikram Singh ^a   Kumar, Anil ^a  

^a G B PANT UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (India)

^b DRDO   (India)

Author keywords

Dof gene; Eleusine coracana; Finger millet; Light and nitrogen dosage dependent expression; Nitrogen use efficiencies

Indexed keywords

COMPLEMENTARY DNA; NITRATE; NITROGEN; NUCLEOTIDE; PROTEIN;

ARTICLE; BIOACCUMULATION; CONTROLLED STUDY; DARKNESS; DNA ISOLATION; DOF1 GENE; DOF2 GENE; FINGER MILLET; GENE EXPRESSION REGULATION; GENOTYPE; GRAIN PROTEIN CONTENT; ILLUMINATION; LIGHT; MAIZE; NITROGEN CONCENTRATION; NITROGEN METABOLISM; NITROGEN UPTAKE; NONHUMAN; NUCLEOTIDE SEQUENCE; OSCILLATION; PLANT GENE; PLANT ROOT; PRIORITY JOURNAL; SHOOT; GENE; GENE CONTROL; GENE EXPRESSION; KINETICS; PLANT TISSUE; REPRESSOR GENE;

ELEUSINE CORACANA; ZEA MAYS;

DOF GENE; ELEUSINE CORACANA; FINGER MILLET; LIGHT AND NITROGEN DOSAGE DEPENDENT EXPRESSION; NITROGEN USE EFFICIENCIES;

ELEUSINE; GENE EXPRESSION REGULATION, PLANT; GENOTYPE; LIGHT; NITROGEN; PLANT ROOTS; PLANT SHOOTS; SEED STORAGE PROTEINS; SEEDS; TRANSCRIPTION FACTORS;

EID: 84903479168     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.05.057     Document Type: Article

References (32)

1. Bailey T.L., Williams N., Misleh C., Li W.W. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 2006, 34:W369-W373.
2. Crawford N.M. Nitrate: nutrient and signal for plant growth. Plant Cell 1995, 7:859-868.
3. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
4. Foyer C.H., Noctor G. Photosynthetic nitrogen assimilation: inter-pathway control and signalling. Advances in Photosynthesis Research 2002, 12:1-22. C.H. Foyer, G. Noctor (Eds.).
5. Gupta N., Gupta A.K., Singh N.K., Kumar A. Differential expression of PBF Dof transcription factor in different tissues of three finger millet genotypes differing in seed protein content and color. Plant Mol. Biol. Rep. 2011, 29:69-76.
6. Gupta N., Gupta A.K., Kumar A. Spatial distribution pattern analysis of Dof1 transcription factor in different tissues of three Eleusine coracana genotypes differing in their grain protein, yield and photosynthetic efficiency. Mol. Biol. Rep. 2012, 39:2089-2095.
7. Gupta A.K., Gaur V.S., Gupta S., Kumar A. Nitrate signals determine the sensing of nitrogen through differential expression of genes involved in nitrogen uptake and assimilation in finger millet. Funct. Integr. Genomics 2013, 13:179-190.
8. Hilu K.W., De Wet J.M.J., Harlan J.R. Archeobotany and the origin of finger millet. Am. J. Bot. 1979, 66:330-333.
9. Kant S., Bi Y.M., Rothstein S.J. Understanding plant responses to nitrogen limitation for the improvement of crop nitrogen use efficiencies. J. Exp. Bot. 2011, 62:1499-1509.
10. Kanwal P., Gupta S., Arora S., Kumar A. Identification of genes involved in carbon metabolism from Eleusine coracana (L.) for understanding their light mediated entrainment and regulation. Plant Cell Rep. 2014, 10.1007/s00299-014-1625-4.
11. Kumar R., Taware R., Gaur V.S., Guru S.K., Kumar A. Influence of nitrogen on the expression of TaDof1 transcription factor in wheat and its relationship with photo synthetic and ammonium assimilating efficiency. Mol. Biol. Rep. 2009, 36:2209-2220.
12. Kumar A., Kanwal P., Gupta A.K., Singh B.R., Gaur V.S. A full-length Dof1 transcription factor of finger millet and its response to a circadian cycle. Plant Mol. Biol. Rep. 2013, 10.1007/s11105-013-0653-5.
13. Murashige T., Skoog F.A. Revised medium for rapid growth and bioassay with tobacco tissue cultures. Physiol. Plant. 1962, 15:473-497.
14. Papi M., Sabatini S., Bouchez D., Camilleri C., Costantino P., Vittorioso P. Identification and disruption of an Arabidopsis zinc finger gene controlling seed germination. Genes Dev. 2000, 14:28-33.
15. Plesch G., Ehrhardt T., Mueller-Roeber B. Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell-specific gene expression. Plant J. 2001, 28:455-464.
16. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
17. Sambrook J., Fritsch E.F., Manniatis T. Molecular Cloning: A Laboratory Manual 1989, Cold Spring Harbor Laboratory Press, Cold Spring Harbour, New York. 2nd edn.
18. Shaw L.M., McIntyre C.L., Gresshof P.M., Xue G.P. Members of the Dof transcription factor family in Triticum aestivum are associated with light mediated gene regulation. Funct. Integr. Genomics 2009, 9:485-498.
19. Skirycz A., Reichelt M., Burow M., Birkemeyer C., Rolcik J. DOF transcription factor AtDOF1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. Plant J. 2006, 47:10-24.
20. Sonoda Y., Ikeda A., Saiki S., Yamaya T., Yamaguchi J. Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice. Plant Cell Physiol. 2003, 44:1396-1402.
21. Stitt M. Nitrate regulation of metabolism and growth. Curr. Opin. Plant Biol. 1999, 2:178-186.
22. Stitt M., Müller C., Matt P., Gibon Y., Carillo P., Morcuende R., Scheible W.R., Krapp A. Steps towards an integrated view of nitrogen metabolism. J. Exp. Bot. 2002, 53:959-970.
23. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
24. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 11:4673-4680.
25. Wang Y., Fu B., Pan L., Chen L., Fu X., Li K. Over-expression of Arabidopsis Dof1, GS1 and GS2 enhanced nitrogen assimilation in transgenic tobacco grown under low-nitrogen condition. Plant Mol. Biol. Rep. 2013, 31:886-900.
26. Ward J.M., Cufr C.A., Denzel M.A., Nef M.M. The Dof transcription factor OBP3 modulates phytochrome and cryptochrome signalling in Arabidopsis. Plant Cell 2005, 17:475-485.
27. Yanagisawa S. Dof DNA binding proteins contain a novel zinc finger motif. Trends Plant Sci. 1996, 1:213-214.
28. Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in the carbon metabolism in maize. Plant J. 2000, 21:281-288.
29. Yanagisawa S. DOF domain proteins: plant-specific transcription factors associated with diverse phenomena unique to plants. Plant Cell Physiol. 2004, 45:386-391.
30. Yanagisawa S., Sheen J. Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression. Plant Cell 1998, 10:75-89.
31. Yanagisawa S., Akiyama A., Kisaka H., Uchimiya H., Tetuya M. Metabolic engineering with Dof1 transcription factor in plants: improved nitrogen assimilation and growth under low-nitrogen conditions. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:7833-7838.
32. Yang J., Yang M.F., Wang D., Chen F., Shen S.H. JcDof1, a Dof transcription factor gene, is associated with the light-mediated circadian clock in Jatropha curcas. Physiol. Plant. 2010, 139:324-334.