Characterization of 1-Aminocyclopropane-1-Carboxylate (ACC) deaminase-containing pseudomonas spp. in the Rhizosphere of salt-stressed canola

Pedosphere

Volumn 24, Issue 4, 2014, Pages 461-468

  Akhgar, A R ^a   Arzanlou, M ^b   Bakker, P A H M ^c   Hamidpour, M ^a  

^a VALI E ASR UNIVERSITY OF RAFSANJAN   (Iran)

^b UNIVERSITY OF TABRIZ   (Iran)

^c UTRECHT UNIVERSITY   (Netherlands)

Author keywords

BOX A1R based repetitive extragenic palindromic polymerase chain reaction (BOX PCR); Ethylene; Indole acetic acid; Phylogenetic analysis; Plant growth promoting rhizobacteria (PGPR); Pseudomonas fluorescens

Indexed keywords

ACETIC ACID; CANOLA; ENVIRONMENTAL STRESS; ENZYME ACTIVITY; ETHYLENE; GENETIC ANALYSIS; GROWTH REGULATOR; MICROBIAL ACTIVITY; PHYLOGENETICS; POLYMERASE CHAIN REACTION; RHIZOBACTERIUM; RHIZOSPHERE; SALINITY; SALINITY TOLERANCE;

EID: 84903377263     PISSN: 10020160     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1002-0160(14)60032-1     Document Type: Article

References (55)

1. Aeron A., Pandey P., Maheshwari D.K. Differential response of sesame under influence of indigenous and nonindigenous rhizosphere competent fluorescent pseudomonads. Curr. Sci. 2010, 99:166-168.
2. Albino U., Saridakis D.P., Ferreira M.C., Hungria M., Vinuesa P., Andrade G. High diversity of diazotrophic bacteria associated with the carnivorous plant Drosera villosa var. villosa growing in oligotrophic habitats in Brazil. Plant Soil. 2006, 287:199-207.
3. Arshad M., Frankenberger W.T. Ethylene: Agricultural Sources and Applications 2002, Kluwer Academic/Plenum Publishers, New York.
4. Arshad M., Shaharoona B., Mahmood T. Inoculation with Pseudomonas spp. containing ACC-deaminase partially eliminates the effects of drought stress on growth, yield, and ripening of pea (Pisum sativum L.). Pedosphere. 2008, 18:611-620.
5. Belimov A.A., Hotzeas N., Safronova V.I., Demchinskaya S.V., Piluzza G., Bullitta S., Glick B.R. Cadmiumtolerant plant growth-promoting bacteria associated with the roots of Indian mustard (Brassica juncea L. Czern.). Soil Biol. Biochem. 2005, 37:241-250.
6. Belimov A.A., Safronova V.I., Sergeyeva T.A., Egorova T.N., Matveyeva V.A., Tsyganov V.E., Borisov A.Y., Tikhonovich I.A., Kluge C., Preisfeld A., Dietz K.J., Stepanok V.V. Characterisation of plant growth promoting rhizobacteria isolated from polluted soils and containing 1-aminocyclopropane-1-carboxylate deaminase. Can. J. Microbiol. 2001, 47:642-652.
7. Benizri E., Courtade A., Picard C., Guckert A. Role of maize root exudates in the production of auxins by Pseudomonas fluorescens M.3.1. Soil Biol. Biochem. 1998, 30:1481-1484.
8. Berendsen R.L., Kalkhove S.I.C., Lugones L.G., Baars J.J.P., Wösten H.A.B., Bakker P.A.H.M. Effects of fluorescent Pseudomonas spp. isolated from mushroom cultures on Lecanicillium fungicola. Biol. Control. 2012, 63:210-221.
9. Brown M.E. Seed and root bacterization. Annu. Rev. Phytopathol. 1974, 12:181-197.
10. Burd G.I., Dixon D.G., Glick B.R. A plant growth-promoting bacterium that decreases nickel toxicity in seedlings. Appl. Environ. Microbiol. 1998, 64:3663-3668.
11. Couillerot O., Poirier M.A., Prigent-Combaret C., Mavingui P., Caballero-Mellado J., Moënne-Loccoz Y. Assessment of SCAR markers to design real-time PCR primers for rhizosphere quantification of Azospirillum brasilense phytostimulatory inoculants of maize. J. Appl. Microbiol. 2010, 109:528-538.
12. Davison J. Plant beneficial bacteria. Nat. Biotechnol. 1988, 6:282-286.
13. Dell'Amico E., Cavalca L., Andreoni V. Analysis of rhizobacterial communities in perennial Graminaceae from polluted water meadow soil, and screening of metal-resistant, potentially plant growth-promoting bacteria. FEMS Microbiol. Ecol. 2005, 52:153-162.
14. Esashi Y. Ethylene and seed germination. The Plant Hormone Ethylene 1991, 133-157. CRC Press, Boca Raton. A.K. Mattoo, J.C. Suttle (Eds.).
15. Farhoudi R., Sharifzadeh F. The effects of NaCl priming on salt tolerance in canola (Brassica napus L.) seedlings grown under saline conditions. Indian J. Crop Sci. 2006, 1:74-78.
16. Glick B.R. The enhancement of plant growth by freeliving bacteria. Can. J. Microbiol. 1995, 41:109-117.
17. Glick B.R., Patten C.L., Holguin G., Penrose D.M. Biochemical and Genetic Mechanisms Used by Plant Growth Promoting Bacteria 1999, Imperial College Press, London.
18. Glick B.R., Penrose D.M., Li J. A model for the lowering of plant ethylene concentrations by plant growth-promoting bacteria. J. Theor. Biol. 1998, 190:63-68.
19. Grichko V.P., Glick B.R. Amelioration of flooding stress by ACC deaminase-containing plant growth-promoting bacteria. Plant Physiol. Biochem. 2001, 39:11-17.
20. Hontzeas N., Richardson A.O., Belimov A., Safronova V., Abu-Omar M.M., Glick B.R. Evidence for horizontal transfer of 1-aminocyclopropane-1-carboxylate deaminase genes. Appl. Environ. Microbiol. 2005, 71:7556-7558.
21. Jackson M.B. Ethylene in root growth and development. The Plant Hormone Ethylene 1991, 159-181. CRC Press, Boca Raton. A.K. Mattoo, J.C. Suttle (Eds.).
22. Jackson M.L. Soil Chemistry Analysis 1958, Prentice Hall Inc., Englewood Cliffs.
23. Jacobson C.B., Pasternak J.J., Glick B.R. Partial purification and characterization of 1-aminocyclopropane-1-carboxylate deaminase from the plant growth promoting rhizobacterium Pseudomonas putida GR12-2. Can. J. Microbiol. 1994, 40:1019-1025.
24. Jia Y.J., Kakuta Y., Sugawara M., Igarashi T., Oki N., Kisaki M., Shoji T., Kanetuna Y., Horita T., Matsui H., Honma M. Synthesis and degradation of 1-aminocyclopropane-l-carboxylic acid by Penicillium citrium. Biosci. Biotechnol. Biochem. 1999, 63:542-549.
25. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
26. Kloepper J.W., Leong J., Teintze M., Schroth M.N. Pseudomonas siderophores: a mechanism explaining disease-suppressive soils. Curr. Microbiol. 1980, 4:317-320.
27. Kloepper J.W., Lifshitz R., Schroth M.N. Pseudomonas inoculants to benefit plant production. ISI Atlas Sci. Anim. Plant Sci. 1988, 1:60-64.
28. Li J., Glick B.R. Transcriptional regulation of the Enterobacter cloacae UW4 1-aminocyclopropane-1-carboxylate (ACC) deaminase gene (acdS). Can. J. Microbiol. 2001, 47:359-367.
29. Li J., Ovakim D.H., Charles T.C., Glick B.R. An ACC deaminase minus mutant of Entrobacter cloacea UW4 no longer promotes root elongation. Curr. Microbiol. 2000, 41:101-105.
30. Ma W., Guinel F.C., Glick B.R. Rhizobium leguminosarum biovar viciae 1-aminocyclopropane-1-carboxylate deaminase promotes nodulation of pea plants. Appl. Environ. Microb. 2003, 69:4396-4402.
31. Ma W., Sebestianova S.B., Sebestian J., Burd G.I., Guinel F.C., Glick B.R. Prevalence of 1-aminocyclopropane-1-carboxylate deaminase in Rhizobium spp. Anton. Leeuw. 2003, 83:285-291.
32. Macrae A. The use of 16S rDNA methods in soil microbial ecology. Braz. J. Microbiol. 2000, 31:77-82.
33. Mayak S., Tirosh T., Glick B.R. Plant growth-promoting bacteria that confer resistance to water stress in tomatoes and peppers. Plant Sci. 2004, 166:525-530.
34. Mayak S., Tirosh T., Glick B.R. Plant growth-promoting bacteria confer resistance in tomato plants to salt stress. Plant Physiol. Biochem. 2004, 42:565-572.
35. Nadeem S.M., Shaharoona B., Arshad M., Crowley D.E. Population density and functional diversity of plant growth promoting rhizobacteria associated with avocado trees in saline soils. Appl. Soil Ecol. 2012, 62:147-154.
36. Nayak B.S., Badgley B., Harwood V.J. Comparison of genotypic and phylogenetic relationships of environmental Enterococcus isolates by BOX-PCR typing and 16S rRNA gene sequencing. Appl. Environ. Microbiol. 2011, 77:5050-5055.
37. Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 1996, 178:5636-5643.
38. Patten C.L., Glick B.R. Bacterial biosynthesis of indole-3-acetic acid. Can. J. Microbiol. 1996, 42:207-220.
39. Patten C.L., Glick B.R. Role of Pseudomonas putida indoleacetic acid in development of the host plant root system. Appl. Environ. Microbiol. 2002, 68:3795-3801.
40. Ramamoorthy V., Viswanathan R., Raguchander T., Prakasam V., Samiyappan R. Induction of systemic resistance by plant growth promoting rhizobacteria in crop plants against pests and diseases. Crop Prot. 2001, 20:1-11.
41. Richards L.A. Diagnosis and Improvement of Saline and Alkali Soils 1954, USDA, Washington D.C.
42. Rohlf F.J. NTSYSpc: Numerical Taxonomy and Multivariate Analysis System. Version 2.1 2000, Applied Biostatistics Inc., New York.
43. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
44. Saravanakumar D., Samiyappan R. ACC deaminase from Pseudomonas fluorescens mediated saline resistance in groundnut (Arachis hypogea) plants. J. Appl. Microbiol. 2007, 102:1283-1292.
45. Sergeeva E., Shah S., Glick B.R. Growth of transgenic canola (Brassica napus cv. Westar) expressing a bacterial 1-aminocyclopropane-1-carboxylic (ACC) deaminase gene on high concentrations of salt. World J. Microbiol. Biotechnol. 2006, 22:277-282.
46. Sharma M., Mishra V., Rau N., Sharma R.S. Functionally diverse rhizobacteria of Saccharum munja (a native wild grass) colonizing abandoned morrum mine in Aravalli hills (Delhi). Plant Soil. 2011, 341:447-459.
47. Sheehy R.E., Honma M., Yamada M., Sasaki T., Martineau B., Hiatt W.R. Isolation, sequence, and expression in Escherichia coli of the Pseudomonas sp. strain ACP gene encoding 1-aminocyclopropane-1-carboxylate deaminase. J. Bacteriol. 1991, 173:5260-5265.
48. Smith N.C., Hennessy J., Stead D.E. Repetitive sequence-derived PCR profiling using the BOX-A1R primer for rapid identification of the plant pathogen Clavibacter michiganensis subspecies sepedonicus. Eur. J. Plant Pathol. 2001, 107:739-748.
49. Sparks D.L. Environmental Soil Chemistry 2003, Academic Press, San Diego. 2nd Ed.
50. Timmusk S., Paalme V., Pavlicek T., Bergguist J., Vangala A., Danilas T., Nevo E. Bacterial distribution in the rhizosphere of wild barley under contrasting microclimates. Plos One. 2011, 6:1-7.
51. Versalovic J., Schneider M., de Bruijn F.J., Lupski J.R. Genomic fingerprinting of bacteria using the repetitive sequence-based polymerase chain reaction. Method. Mol. Cell. Biol. 1994, 5:25-40.
52. Vivekananthan R., Ravi M., Ramanathan A., Samiyappan R. Lytic enzymes induced by Pseudomonas fluorescens and other biocontrol organisms mediate defence against the anthracnose pathogen in mango. World J. Microbiol. Biotechnol. 2004, 20:235-244.
53. Wang C., Knill E., Glick B.R., Défago G. Effect of transferring 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase genes into Pseudomonas fluorescens strain CHA0 and its gacA derivative CHA96 on their growth-promoting and disease-suppressive capacities. Can. J. Microbiol. 2000, 46:898-907.
54. Wang C., Ramette A., Punjasamarnwong P., Zala M., Natsch A., Moënne-Locooz Y., Défago G. Cosmopolitan distribution of phlD-containing dicotyledonous crop-associated biocontrol pseudomonads of worldwide origin. FEMS. Microbiol. Ecol. 2001, 37:105-116.
55. Whipps J.M. Carbon economy. The Rhizosphere 1990, 59-97. John Wiley & Sons, Ltd., New York. J.M. Lynch (Ed.).