Complete nucleotide sequence of two multidrug-resistant IncR plasmids from Klebsiella pneumoniae

Antimicrobial Agents and Chemotherapy

Volumn 58, Issue 7, 2014, Pages 4207-4210

  Compain, Fabrice ^a   Frangeul, Lionel ^c   Drieux, Laurence ^a,e   Verdet, Charlotte ^b   Brisse, Sylvain ^c,d   Arlet, Guillaume ^a,b   Decré, Dominique ^a,b  

^a SORBONNE UNIVERSITÉ   (France)

^b ASSISTANCE PUBLIQUE HÔPITAUX DE PARIS   (France)

^c INSTITUT PASTEUR   (France)

^d CNRS   (France)

^e PITIÉ SALPÊTRIÈRE HOSPITAL   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMIKACIN; BACTERIAL PROTEIN; CEFEPIME; CEFOTAXIME; CEFOXITIN; CEFTAZIDIME; CIPROFLOXACIN; COTRIMOXAZOLE; GENTAMICIN; INCR PROTEIN; NUCLEOTIDE; OFLOXACIN; PIPERACILLIN PLUS TAZOBACTAM; TOBRAMYCIN; UNCLASSIFIED DRUG; AMINOGLYCOSIDE; ANTIINFECTIVE AGENT; BETA LACTAMASE; QUINOLONE DERIVATIVE; TRANSPOSON;

ANTIBIOTIC SENSITIVITY; ARTICLE; GENE REPLICATION; KLEBSIELLA PNEUMONIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; TRANSPOSON; ANTIBIOTIC RESISTANCE; DNA SEQUENCE; GENE; GENETICS; MICROBIAL SENSITIVITY TEST; MOLECULAR GENETICS; MULTIDRUG RESISTANCE; R FACTOR;

AMINOGLYCOSIDES; ANTI-BACTERIAL AGENTS; BASE SEQUENCE; BETA-LACTAM RESISTANCE; BETA-LACTAMASES; DNA TRANSPOSABLE ELEMENTS; DRUG RESISTANCE, MULTIPLE, BACTERIAL; FLUOROQUINOLONES; GENES, MDR; KLEBSIELLA PNEUMONIAE; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; R FACTORS; SEQUENCE ANALYSIS, DNA;

EID: 84903182856     PISSN: 00664804     EISSN: 10986596     Source Type: Journal    
DOI: 10.1128/AAC.02773-13     Document Type: Article

References (28)

1. García-Fernández A, Fortini D, Veldman K, Mevius D, Carattoli A. 2009. Characterization of plasmids harbouring qnrS1, qnrB2 and qnrB19 genes in Salmonella. J. Antimicrob. Chemother. 63:274-281. http://dx.doi.org/10.1093/jac/dkn470.
2. Hidalgo L, Gutierrez B, Ovejero CM, Carrilero L, Matrat S, Saba CK, Santos-Lopez A, Thomas-Lopez D, Hoefer A, Santurde G, Martin-Espada C, Gonzalez-Zorn B. 2013. Klebsiella pneumoniae ST11 from companion animals bearing ArmA methyltransferase, DHA-1 β-lactamase and QnrB4. Antimicrob. Agents Chemother. 57:4532-4534. http://dx.doi.org/10.1128/AAC.00491-13.
3. Baraniak A, Grabowska A, Izdebski R, Fiett J, Herda M, Bojarska K, Żabicka D, Kania-Pudło M, Młynarczyk G, Żak- Puławska Z, Hryniewicz W, Gniadkowski M, KPC-PL Study Group. 2011. Molecular characteristics of KPC-producing Enterobacteriaceae at the early stage of their dissemination in Poland, 2008-2009. Antimicrob. Agents Chemother. 55: 5493-5499. http://dx.doi.org/10.1128/AAC.05118-11.
4. TEM-52 gene. J. Antimicrob. Chemother. 66:2465-2474. http://dx.doi.org/10.1093/jac/dkr331.
5. (KPC) from New York City and Toronto. J. Antimicrob. Chemother. 66:1273-1277. http://dx.doi.org/10.1093/jac/dkr092.
6. Drieux L, Decré D, Frangeul L, Arlet G, Jarlier V, Sougakoff W. 2013. Complete nucleotide sequence of the large conjugative pTC2 multireplicon plasmid encoding the VIM-1 metallo-β-lactamase. J. Antimicrob. Chemother. 68:97-100. http://dx.doi.org/10.1093/jac/dks367.
7. Papagiannitsis CC, Miriagou V, Giakkoupi P, Tzouvelekis LS, Vatopoulos AC. 2013. Characterization of pKP1780, a novel IncR plasmid from the emerging Klebsiella pneumoniae ST147, encoding the VIM-1 metallo-β-lactamase. J. Antimicrob. Chemother. 68:2259-2262. http://dx.doi.org/10.1093/jac/dkt196.
8. Shen P, Wei Z, Jiang Y, Du X, Ji S, Yu Y, Li L. 2009. Novel genetic environment of the carbapenem-hydrolyzing beta-lactamase KPC-2 among Enterobacteriaceae in China. Antimicrob. Agents Chemother. 53: 4333-4338. http://dx.doi.org/10.1128/AAC.00260-09.
9. (KPC-2) plasmid. J. Clin. Microbiol. 50:3768-3772. http://dx.doi.org/10.1128/JCM.01892-12.
10. Chen YT, Shu HY, Li LH, Liao TL, Wu KM, Shiau YR, Yan JJ, Su IJ, Tsai SF, Lauderdale TL. 2006. Complete nucleotide sequence of pK245, a 98-kilobase plasmid conferring quinolone resistance and extended-spectrum-beta-lactamase activity in a clinical Klebsiella pneumoniae isolate. Antimicrob. Agents Chemother. 50:3861-3866. http://dx.doi.org/10.1128/AAC.00456-06.
11. Villa L, García-Fernández A, Fortini D, Carattoli A. 2010. Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants. J. Antimicrob. Chemother. 65:2518-2529. http://dx.doi.org/10.1093/ jac/dkq347.
12. Kado CI, Liu ST. 1981. Rapid procedure for detection and isolation of large and small plasmids. J. Bacteriol. 145:1365-1373. (Pubitemid 11097357)
13. Frangeul L, Glaser P, Rusniok C, Buchrieser C, Duchaud E, Dehoux P, Kunst F. 2004. CAAT-Box, contigs-assembly and annotation tool-box for genome sequencing projects. Bioinformatics 20:790-797. http://dx.doi.org/10.1093/ bioinformatics/btg490. (Pubitemid 38443837)
14. Lane D, de Feyter R, Kennedy M, Phua SH, Semon D. 1986. D protein of miniF plasmid acts as a repressor of transcription and as a site-specific resolvase. Nucleic Acids Res. 14:9713-9728.
15. Smith CM, Eisenstadt E. 1989. Identification of a umuDC locus in Salmonella Typhimurium LT2. J. Bacteriol. 171:3860-3865. (Pubitemid 19174161)
16. Chen YT, Lin JC, Fung CP, Lu PL, Chuang YC, Wu TL, Siu LK. 2014. KPC-2-encoding plasmids from Escherichia coli and Klebsiella pneumoniae in Taiwan. J. Antimicrob. Chemother. 69:628-631. http://dx.doi.org/10.1093/jac/ dkt409.
17. Guynet C, Cuevas A, Moncalián G, de la Cruz F. 2011. The stb operon balances the requirements for vegetative stability and conjugative transfer of plasmid R388. PLoS Genet. 7:e1002073. http://dx.doi.org/10.1371/ journal.pgen.1002073.
18. Partridge SR. 2011. Analysis of antibiotic resistance regions in Gramnegative bacteria. FEMS Microbiol. Rev. 35:820-855. http://dx.doi.org/10. 1111/j.1574-6976.2011.00277.x.
19. Mollet B, Clerget M, Meyer J, Iida S. 1985. Organization of the Tn6-related kanamycin resistance transposon Tn2680 carrying two copies of IS26 and an IS903 variant, IS903.B. J. Bacteriol. 163:55-60. (Pubitemid 15011716)
20. Groisman EA, Parra-Lopez C, Salcedo M, Lipps CJ, Heffron F. 1992. Resistance to host antimicrobial peptides is necessary for Salmonella virulence. Proc. Natl. Acad. Sci. U. S. A. 89:11939-11943. http://dx.doi.org/10.1073/pnas. 89.24.11939. (Pubitemid 23004760)
21. Darwin AJ. 2005. The phage-shock-protein response. Mol. Microbiol. 57:621-628. http://dx.doi.org/10.1111/j.1365-2958.2005.04694.x. (Pubitemid 41025946)
22. Verdet C, Benzerara Y, Gautier V, Adam O, Ould-Hocine Z, Arlet G. 2006. Emergence of DHA-1-producing Klebsiella spp. in the Parisian region: genetic organization of the ampC and ampR genes originating from Morganella morganii. Antimicrob. Agents Chemother. 50:607-617. http://dx.doi.org/10.1128/AAC.50.2. 607-617.2006. (Pubitemid 43190973)
23. SHV mobilization events from the Klebsiella pneumoniae chromosome. J. Antimicrob. Chemother. 54:69-75. http://dx.doi.org/10.1093/jac/dkh251.
24. Anantham S, Hall RM. 2012. pCERC1, a small, globally disseminated plasmid carrying the dfrA14 cassette in the strA gene of the sul2-strA-strB gene cluster. Microb. Drug Resist. 18:364-371. http://dx.doi.org/10.1089/mdr.2012. 0008.
25. Dolejska M, Villa L, Dobiasova H, Fortini D, Feudi C, Carattoli A. 2013. Plasmid content of a clinically relevant Klebsiella pneumoniae clone from the Czech Republic producing CTX-M-15 and QnrB1. Antimicrob. Agents Chemother. 57:1073-1076. http://dx.doi.org/10.1128/AAC.01886-12.
26. Alvarado A, Garcillán-Barcia MP, de la Cruz F. 2012. A degenerate primer MOB typing (DPMT) method to classify gamma-proteobacterial plasmids in clinical and environmental settings. PLoS One 7:e40438. http://dx.doi.org/10. 1371/journal.pone.0040438.
27. Petty NK, Bulgin R, Crepin VF, Cerdeño-Tárraga AM, Schroeder GN, Quail MA, Lennard N, Corton C, Barron A, Clark L, Toribio AL, Parkhill J, Dougan G, Frankel G, Thomson NR. 2010. The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. J. Bacteriol. 192:525-538. http://dx.doi.org/10.1128/JB.01144-09.
28. DHA-1, qnrB4, and armA. Antimicrob. Agents Chemother. 54:3967-3969. http://dx.doi.org/10.1128/AAC.00137-10.