Daily changes in temperature, not the circadian clock, regulate growth rate in Brachypodium distachyon

PLoS ONE

Volumn 9, Issue 6, 2014, Pages

  Matos, Dominick A ^a   Cole, Benjamin J ^b   Whitney, Ian P ^a   MacKinnon, Kirk J M ^a   Kay, Steve A ^b   Hazen, Samuel P ^a  

^a UNIVERSITY OF MASSACHUSETTS   (United States)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOMASS; BRACHYPODIUM; CELL DIVISION; CELL EXPANSION; CIRCADIAN RHYTHM; CONTROLLED STUDY; GENE EXPRESSION REGULATION; GROWTH RATE; GROWTH REGULATION; LIGHT; MERISTEM; NONHUMAN; PHOTOPERIODICITY; PLANT GROWTH; SIGNAL TRANSDUCTION; TEMPERATURE; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PHYSIOLOGY; PLANT LEAF; RADIATION RESPONSE; TIME LAPSE IMAGING;

TRANSCRIPTION FACTOR CLOCK;

BRACHYPODIUM; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; CLOCK PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; LIGHT; PHOTOPERIOD; PLANT LEAVES; TEMPERATURE; TIME-LAPSE IMAGING;

EID: 84902811724     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0100072     Document Type: Article

References (66)

1. Harmer SL (2009) The circadian system in higher plants. Annu Rev Plant Biol 60: 357-377.
2. Walter A, Silk WK, Schurr U (2009) Environmental effects on spatial and temporal patterns of leaf and root growth. Annu Rev Plant Biol 60: 279-304.
3. Farré EM (2012) The regulation of plant growth by the circadian clock. Plant Biology 14: 401-410.
4. Devlin PF, Kay SA (2001) Circadian photoperception. Ann Rev Physiol 63: 677-694. (Pubitemid 32304334)
5. Nozue K, Covington MF, Duek PD, Lorrain S, Fankhauser C, et al. (2007) Rhythmic growth explained by coincidence between internal and external cues. Nature 448: 358-361. (Pubitemid 47080338)
6. Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, et al. (2011) The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475: 398-402.
7. Dowson-Day MJ, Millar AJ (1999) Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant J 17: 63-71.
8. Wiese A, Christ MM, Virnich O, Schurr U, Walter A (2007) Spatio-temporal leaf growth patterns of Arabidopsis thaliana and evidence for sugar control of the diel leaf growth cycle. New Phytol 174: 752-761. (Pubitemid 46743893)
9. Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, et al. (2008) A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol 6: e225.
10. Imaizumi T (2010) Arabidopsis circadian clock and photoperiodism: time to think about location. Curr Opin Plant Biol 13: 83-89.
11. Song YH, Ito S, Imaizumi T (2010) Similarities in the circadian clock and photoperiodism in plants. Curr Opin Plant Biol 13: 594-603.
12. Walter A, Schurr U (2005) Dynamics of leaf and root growth: endogenous control versus environmental impact. Ann Bot 95: 891-900. (Pubitemid 41214402)
13. Bertram L, Lercari B (1997) Kinetics of stem elongation in light-grown tomato plants. Responses to different photosynthetically active radiation levels by wildtype and aurea mutant plants. Photochem Photobiol 66: 396-403. (Pubitemid 127494531)
14. Schmundt D, Stitt M, Jähne B, Schurr U (1998) Quantitative analysis of the local rates of growth of dicot leaves at a high temporal and spatial resolution, using image sequence analysis. Plant J 16: 505-514.
15. Poire R, Wiese-Klinkenberg A, Parent B, Mielewczik M, Schurr U, et al. (2010) Diel time-courses of leaf growth in monocot and dicot species: endogenous rhythms and temperature effects. J Exp Bot 61: 1751-1759.
16. Shackel KA, Matthews MA, Morrison JC (1987) Dynamic relation between expansion and cellular turgor in growing grape (Vitis vinifera L.) leaves. Plant Physiol 84: 1166-1171.
17. Walter A, Christ MM, Barron-gafford GA, Grieve KA, Murthy R, et al. (2005) The effect of elevated CO2 on diel leaf growth cycle, leaf carbohydrate content and canopy growth performance of Populus deltoides. Glob Change Biol 11: 1207-1219. (Pubitemid 43898745)
18. Davies WJ, Van Volkenburgh E (1983) The influence of water deficit on the factors controlling the daily pattern of growth of Phaseolus trifoliates. J Exp Bot 34: 987-999.
19. Taylor G, Davies WJ (1986) Yield tirgor of growing leaves of Betula and Acer. New Phytol 104: 347-353.
20. McDonald AJS, Stadenberg I, Sands R (1992) Diurnal variation in extension growth of leaves of Salix viminalis. Tree Physiol 11: 123-132.
21. Ainsworth E, Walter A, Schurr U (2005) Glycine max leaflets lack a base-tip gradient in growth rate. J Plant Res 118: 343-346. (Pubitemid 41737090)
22. Tutty JR, Hicklenton PR, Kristie DN, McRae KB (1994) The influence of photoperiod and temperature on the kinetics of stem elongation in Dendranthema grandiflorum. J Am Soc Hortic Sci 119: 138-143. (Pubitemid 2069815)
23. Johnson WC (1967) Diurnal variation In growth rate of grain sorghum. Agron J 59: 41-44.
24. Gallagher JN, Biscoe PV (1978) Radiation absorption, growth and yield of cereals. J Agr Sci 91: 47-60.
25. Acevedo E, Fereres E, Hsiao TC, Henderson DW (1979) Diurnal growth trends, water potential, and osmotic adjustment of maize and sorghum leaves in the field. Plant Physiol 64: 476-480.
26. Cutler JM, Steponkus PL, Wach MJ, Shahan KW (1980) Dynamic aspects and enhancement of leaf elongation in rice. Plant Physiol 66: 147-152.
27. Kemp DR, Blacklow WM (1980) Diurnal extension rates of wheat leaves in relation to temperatures and carbohydrate concentrations of the extension zone. J Exp Bot 31: 821-828.
28. Busso CA, Richards JH (1992) Diurnal variation in the temperature response of leaf extension of two bunchgrass species in the field. Plant Cell Environ 15: 855-859.
29. Durand JL, Onillon B, Schnyder H, Rademacher I (1995) Drought effects on cellular and spatial parameters of leaf growth in tall fescue. J Exp Bot 46: 1147-1155.
30. Watts WR (1971) Role of temperature in the regulation of leaf extension in Zea mays. Nature 229: 46-47.
31. Sadok W, Naudin P, Boussuge B, Muller B, Welcker C, et al. (2007) Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions. Plant Cell Environ 30: 135-146. (Pubitemid 46072501)
32. Parent B, Turc O, Gibon Y, Stitt M, Tardieu F (2010) Modelling temperature-compensated physiological rates, based on the co-ordination of responses to temperature of developmental processes. J Exp Bot 61: 2057-2069.
33. Tilman D, Hill J, Lehman C (2006) Carbon-negative biofuels from low-input high-diversity grassland biomass. Science 314: 1598-1600. (Pubitemid 44907153)
34. Dhugga KS (2007) Maize biomass yield and composition for biofuels. Crop Sci 47: 2211-2227.
35. Rooney WL, Blumenthal J, Bean B, Mullet JE (2007) Designing sorghum as a dedicated bioenergy feedstock. Biofpr 1: 147-157.
36. Schmer MR, Vogel KP, Mitchell RB, Perrin RK (2008) Net energy of cellulosic ethanol from switchgrass. Proc Natl Acad Sci USA 105: 464-469. (Pubitemid 351171731)
37. Dohleman FG, Long SP (2009) More productive than maize in the midwest: how does Miscanthus do it? Plant Physiol 150: 2104-2115.
38. Initiative TIB (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
39. Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, et al. (2011) Brachypodium as a model for the grasses: today and the future. Plant Physiol 157: 3-13.
40. Meijer G (1968) Rapid growth inhibition of gherkin hypocotyl in blue light. Acta Bot Neerl 17: 9-14.
41. Miller ND, Parks BM, Spalding EP (2007) Computer-vision analysis of seedling responses to light and gravity. Plant J 52: 374-381. (Pubitemid 47537583)
42. Cole B, Kay SA, Chory J (2011) Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis. Plant J 65: 991-1000.
43. Iijima M, Matsushita N (2011) A circadian and an ultradian rhythm are both evident in root growth of rice. J Plant Physiol 168: 2072-2080.
44. Granier C, Aguirrezabal L, Chenu K, Cookson S, Dauzat M, et al. (2006) PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit. New Phytol 169: 623-635.
45. Jansen M, Gilmer F, Biskup B, Nagel KA, Rascher U, et al. (2009) Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance in Arabidopsis thaliana and other rosette plants. Funct Plant Biol 36: 902-914.
46. Walter A, Studer B, Kolliker R (2012) Advanced phenotyping offers opportunities for improved breeding of forage and turf species. Ann Bot.
47. Abramoff M, Magalhaes P, Ram S (2004) Image processing with ImageJ. Biophotonics International 11: 36-42.
48. Trabucco GM, Matos DA, Lee SJ, Saathoff AJ, Priest HD, et al. (2013) Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon . BMC Biotechnol.
49. Hong SY, Seo P, Yang MS, Xiang F, Park CM (2008) Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR. BMC Plant Biol 8: 112.
50. Hong SY, Lee S, Seo P, Yang MS, Park CM (2010) Identification and molecular characterization of a Brachypodium distachyon GIGANTEA gene: functional conservation in monocot and dicot plants. Plant Mol Biol 72: 485-497.
51. Campoli C, Shtaya M, Davis S, von Korff M (2012) Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 affects circadian expression of flowering time genes, but not clock orthologs. BMC Plant Biol 12: 97.
52. Lancashire PD, Bleiholder H, Boom TVD, Langeluddeke P, Stauss R, et al. (1991) A uniform decimal code for growth stages of crops and weeds. An Appl Biol 119: 561-601.
53. Matsubara K, Ogiso-Tanaka E, Hori K, Ebana K, Ando T, et al. (2012) Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering. Plant Cell Physiol 53: 709-716.
54. Faure S, Turner AS, Gruszka D, Christodoulou V, Davis SJ, et al. (2012) Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) to short growing seasons. Proc Natl Acad Sci USA 109: 8328-8333.
55. Zakhrabekova S, Gough SP, Braumann I, Muller AH, Lundqvist J, et al. (2012) Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. Proc Natl Acad Sci USA 109: 4326-4331.
56. Yang Y, Peng Q, Chen GX, Li XH, Wu CY (2013) OsELF3 is involved in circadian clock regulation for promoting flowering under long-day conditions in rice. Mol Plant 6: 202-215.
57. Turner A, Beales J, Faure S, Dunford R, Laurie D (2005) The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 310: 1031-1034. (Pubitemid 41611918)
58. Murakami M, Ashikari M, Miura K, Yamashino T, Mizuno T (2003) The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Plant Cell Physiology 44: 1229-1236. (Pubitemid 37519082)
59. Murphy RL, Klein RR, Morishige DT, Brady JA, Rooney WL, et al. (2011) Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum. Proc Natl Acad Sci USA 108: 16469-16474.
60. Izawa T, Mihara M, Suzuki Y, Gupta M, Itoh H, et al. (2011) Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field. Plant Cell 23: 1741-1755.
61. Zhao X, Liu M, Li J, Guan C, Zhang X (2005) The wheat TaGI1, involved in photoperiodic flowering, encodes an Arabidopsis GI ortholog. Plant Mol Biol 58: 53-64.
62. Campoli C, Pankin A, Drosse B, Casao CM, Davis SJ, et al. (2013) HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways. New Phytol 199: 1045-1059.
63. Bertram L, Karlsen P (1994) Patterns in stem elongation rate in chrysanthemum and tomato plants in relation to irradiance and day/night temperature. Sci Hortic 58: 139-150. (Pubitemid 2112964)
64. Nelissen H, Rymen B, Jikumaru Y, Demuynck K, Van Lijsebettens M, et al. (2012) A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division. Curr Biol 22: 1183-1187.
65. Ben-Haj-Salah H, Tardieu F (1995) Temperature affects expansion rate of maize leaves without change in spatial distribution of cell length (analysis of the coordination between cell division and cell expansion). Plant Physiol 109: 861-870. (Pubitemid 3009534)
66. Rymen B, Fiorani F, Kartal F, Vandepoele K, Inze D, et al. (2007) Cold nights impair leaf growth and cell cycle progression in maize through transcriptional changes of cell cycle genes. Plant Physi 143: 1429-1438. (Pubitemid 46941543)