Dysregulated microRNA clusters in response to retinoic acid and CYP26B1 inhibitor induced testicular function in dogs

PLoS ONE

Volumn 9, Issue 6, 2014, Pages

  Kasimanickam, Vanmathy R ^a   Kasimanickam, Ramanathan K ^a   Dernell, William S ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME P450 26B1 INHIBITOR; CYTOCHROME P450 INHIBITOR; MICRORNA; MICRORNA 125; MICRORNA 125A CFA; MICRORNA 125B CFA; MICRORNA 146; MICRORNA 146A CFA; MICRORNA 146B CFA; MICRORNA 184 CFA; MICRORNA 200; MICRORNA 200A CFA; MICRORNA 200B; MICRORNA 200C CFA; MICRORNA 214 CFA; MICRORNA 23; MICRORNA 23A CFA; MICRORNA 23B CFA; MICRORNA 34; MICRORNA 34A CFA; MICRORNA 34B CFA; MICRORNA 34C CFA; MICRORNA LET 7A CFA; MICRORNA LET 7B CFA; MICRORNA LET 7C CFA; MICRORNA LET 7F CFA; MICRORNA LET 7G CFA; MICRORNA MIRLET 7; RETINOIC ACID; UNCLASSIFIED DRUG; UNINDEXED DRUG; BENZOTHIAZOLE DERIVATIVE; CYTOCHROME P-450 CYP26B1; CYTOCHROME P450; TALAROZOLE; TRANSCRIPTOME; TRIAZOLE DERIVATIVE;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CHROMOSOME ANALYSIS; CHROMOSOME DISTRIBUTION; CONTROLLED STUDY; DOG; DOWN REGULATION; GENE CLUSTER; GENE EXPRESSION; GENE INTERACTION; GENE SEQUENCE; GENE SIGNATURE; GENE TARGETING; GENETIC ALGORITHM; INFANT; MALE; NONHUMAN; PREDICTION; REAL TIME POLYMERASE CHAIN REACTION; TESTIS FUNCTION; TRANSLATION REGULATION; UPREGULATION; ANIMAL; CLUSTER ANALYSIS; DRUG EFFECTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETICS; METABOLISM; MULTIGENE FAMILY; TESTIS;

ANIMALS; BENZOTHIAZOLES; CLUSTER ANALYSIS; CYTOCHROME P-450 ENZYME INHIBITORS; CYTOCHROME P-450 ENZYME SYSTEM; DOGS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORKS; MALE; MICRORNAS; MULTIGENE FAMILY; TESTIS; TRANSCRIPTOME; TRETINOIN; TRIAZOLES;

EID: 84902665693     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0099433     Document Type: Article

References (47)

1. Kleene KC (2003) Patterns, mechanisms, and functions of translation regulation in mammalian spermatogenic cells. Cytogenet Genome Res. 103: 217-24.
2. Yan N, Lu Y, Sun H, Tao D, Zhang S, et al. (2007) A microarray for microRNA profiling in mouse testis tissues. Reproduction 134: 73-79. (Pubitemid 47244840)
3. Buchold GM, Coarfa C, Kim J, Milosavljevic A, Gunaratne PH, et al. (2010) Analysis of microRNA expression in the prepubertal testis. PLoS One 5: e15317.
4. Wu Q, Song R, Ortogero N, Zheng H, Evanoff R, et al. (2012) The RNase III enzyme DROSHA is essential for microRNA production and spermatogenesis. J Biol Chem. 287: 25173-25190.
5. Rakoczy J, Fernandez-Valverde SL, Glazov EA, Wainwright EN, Sato T, et al. (2013) MicroRNAs-140-5p/140-3p modulate Leydig cell numbers in the developing mouse testis. Biol Reprod 88: 143.
6. Kasimanickam V, Kasimanickam R (2014) Exogenous Retinoic Acid and Cytochrome P450 26B1 Inhibitor Modulate Meiosis-Associated Genes Expression in Canine Testis, an In Vitro Model. Reprod Domest Anim 49: 315-323.
7. Hasegawa K, Saga Y (2012) Retinoic acid signaling in Sertoli cells regulates organization of the blood-testis barrier through cyclical changes in gene expression. Development 139: 4347-4355.
8. Huszar JM, Payne CJ (2013) MicroRNA 146 (Mir146) modulates spermatogonial differentiation by retinoic acid in mice. Biol Reprod 88: 15.
9. Tong MH, Mitchell D, Evanoff R, Griswold MD (2011) Expression of Mirlet7 family microRNAs in response to retinoic acid-induced spermatogonial differentiation in mice. Biol Reprod 85: 189-197.
10. Meseguer S, Mudduluru G, Escamilla JM, Allgayer H, Barettino D (2011) MicroRNAs-10a and -10b contribute to retinoic acid-induced differentiation of neuroblastoma cells and target the alternative splicing regulatory factor SFRS1 (SF2/ASF). J Biol Chem 286: 4150-4164.
11. Kasimanickam VR, Kasimanickam RK (2013) Retinoic acid signaling biomarkers after treatment with retinoic acid and retinoic acid receptor alpha antagonist (Ro 41-5253) in canine testis: an in vitro organ culture study. Theriogenology 79:10-16.
12. Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ (2008) miRBase: tools for microRNAs genomics. NAR 36: D154-D158
13. Wang X, El Naqa IM (2008) Prediction of both conserved and nonconserved microRNA targets in animals. Bioinformatics 24: 325-332. (Pubitemid 351189007)
14. Friedman RC, Farh KK, Burge CB, Bartel DP (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19:92-105.
15. Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, et al. (2010) The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res 38 Suppl: W214-220.
16. Ambros V (2001) microRNAs: tiny regulators with great potential. Cell 107: 823-826.
17. Hayashi K, Chuva de Sousa Lopes SM, Kaneda M, Tang F, Hajkova P, et al. (2008) MicroRNA biogenesis is required for mouse primordial germ cell development and spermatogenesis. PLoS One 3: e1738
18. Western PS, Miles DC, van den Bergen JA, Burton M, Sinclair AH (2008) Dynamic regulation of mitotic arrest in fetal male germ cells. Stem Cells 26: 339-347. (Pubitemid 351413593)
19. Niu Z, Goodyear SM, Rao S, Wu X, Tobias JW, et al. (2011) MicroRNA-21 regulates the self-renewal of mouse spermatogonial stem cells. Proc Natl Acad Sci U S A 108: 12740-12745
20. Tong MH, Mitchell DA, McGowan SD, Evanoff R, Griswold MD (2012) Two miRNA clusters, Mir-17-92 (Mirc1) and Mir-106b-25 (Mirc3), are involved in the regulation of spermatogonial differentiation in mice. Biol Reprod 86: 72.
21. Teng Y, Wang Y, Fu J, Cheng X, Miao S, et al. (2011) Cyclin T2: a novel miR-15a target gene involved in early spermatogenesis. FEBS Lett 585: 2493-2500.
22. Wu J, Bao J, Wang L, Hu Y, Xu C (2011) MicroRNA-184 down-regulates nuclear receptor corepressor 2 in mouse spermatogenesis. BMC Dev Biol 11: 64.
23. Björk JK, Sandqvist A, Elsing AN, Kotaja N, Sistonen L (2010) miR-18, a member of Oncomir-1, targets heat shock transcription factor 2 in spermatogenesis. Development 137: 3177-3184.
24. Bouhallier F, Allioli N, Lavial F, Chalmel F, Perrard MH, et al. (2010) Role of miR-34c microRNA in the late steps of spermatogenesis. RNA 16: 720-731.
25. Dai L, Tsai-Morris CH, Sato H, Villar J, Kang JH, et al. (2011) Testis-specific miRNA-469 up-regulated in gonadotropin-regulated testicular RNA helicase (GRTH/DDX25)-null mice silences transition protein 2 and protamine 2 messages at sites within coding region: implications of its role in germ cell development. J Biol Chem 286: 44306-44318.
26. Chan HW, Lappas M, Yee SW, Vaswani K, Mitchell MD, et al. (2013) The expression of the let-7 miRNAs and Lin28 signalling pathway in human term gestational tissues. Placenta 2013 34: 443-448.
27. Yang Q, Hua J, Wang L, Xu B, Zhang H, et al. (2013) MicroRNA and piRNA profiles in normal human testis detected by next generation sequencing. PLoS One 8: e66809
28. Tian H, Cao YX, Zhang XS, Liao WP, Yi YH, et al. (2013) The targeting and functions of miRNA-383 are mediated by FMRP during spermatogenesis. Cell Death Dis 4: e617.
29. Luo L, Ye L, Liu G, Shao G, Zheng R, et al (2010) Microarray-based approach identifies differentially expressed microRNAs in porcine sexually immature and mature testes. PLoS One 5: e11744.
30. Gu P, Reid JG, Gao X, Shaw CA, Creighton C, et al. (2008) Novel microRNA candidates and miRNA-mRNA pairs in embryonic stem (ES) cells. PLoS One 3: e2548.
31. Torley KJ, da Silveira JC, Smith P, Anthony RV, Veeramachaneni DN, et al. (2011) Expression of miRNAs in ovine fetal gonads: potential role in gonadal differentiation. Reprod Biol Endocrinol 9: 2.
32. Kang L, Cui X, Zhang Y, Yang C, Jiang Y (2013) Identification of miRNAs associated with sexual maturity in chicken ovary by Illumina small RNA deep sequencing. BMC Genomics 14: 352.
33. Chieffi P, Battista S, Barchi M, Di Agostino S, Pierantoni GM, et al. (2002) HMGA1 and HMGA2 protein expression in mouse spermatogenesis. Oncogene 21: 3644-3650. (Pubitemid 34587696)
34. Ma ZB, Yang Y, Wang J, Li L (2009) Expression of high mobility group protein A in male mouse testicular cell lines. Zhonghua Nan Ke Xue 15:534-537.
35. Gaytan F, Sangiao-Alvarellos S, Manfredi-Lozano M, García-Galiano D, Ruiz-Pino F, et al. (2013) Distinct expression patterns predict differential roles of the miRNA-binding proteins, Lin28 and Lin28b, in the mouse testis: studies during postnatal development and in a model of hypogonadotropic hypogonadism. Endocrinology 154: 1321-1336.
36. Kobayashi K, Jakt LM, Nishikawa SI (2013) Epigenetic regulation of the neuroblastoma genes, Arid3band Mycn. Oncogene 32: 2640-2648.
37. Decarpentrie F, Vernet N, Mahadevaiah SK, Longepied G, Streichemberger E, et al. (2012) Human and mouse ZFY genes produce a conserved testis-specific transcript encoding a zinc finger protein with a short acidic domain and modified transactivation potential. Hum Mol Genet 21: 2631-2645.
38. Furu K, Klungland A (2013) Tzfp represses the androgen receptor in mouse testis. PLoS One 8: e62314.
39. Mukherjee S, Diaz Valencia JD, Stewman S, Metz J, Monnier S, et al. (2012) Human Fidgetin is a microtubule severing the enzyme and minus-end depolymerase that regulates mitosis. Cell Cycle 11:2359-2366.
40. Rowbotham SP, Barki L, Neves-Costa A, Santos F, Dean W, et al. (2011) Maintenance of silent chromatin through replication requires SWI/SNF-like chromatin remodeler SMARCAD1. Mol Cell 42: 285-296.
41. Chen K, Rund LA, Beever JE, Schook LB (2006) Isolation and molecular characterization of the porcine transforming growth factor beta type I receptor (TGFBR1) gene. 384: 62-72.
42. Rojas-García PP, Recabarren MP, Sir-Petermann T, Rey R, Palma S, et al. (2013) Altered testicular development as a consequence of increase number of sertoli cell in male lambs exposed prenatally to excess testosterone. Endocrine 43: 705-713.
43. Walker MP, Tian L, Matera AG (2009) Reduced viability, fertility and fecundity in mice lacking the cajal body marker protein, coilin. PLoS One 4: e6171.
44. Ma W, Horvath GC, Kistler MK, Kistler WS (2008) Expression patterns of SP1 and SP3 during mouse spermatogenesis: SP1 down-regulation correlates with two successive promoter changes and translationally compromised transcripts. Biol Reprod 79: 289-300.
45. Sze KL, Lee WM, Lui WY (2008) Expression of CLMP, a novel tight junction protein, is mediated via the interaction of GATA with the Kruppel family proteins, KLF4 and Sp1, in mouse TM4 Sertoli cells. J Cell Physiol 214: 334-344. (Pubitemid 350308989)
46. Bao J, Zhang J, Zheng H, Xu C, Yan W (2010) UBQLN1 interacts with SPEM1 and participates in spermiogenesis. Mol Cell Endocrinol 327: 89-97.
47. Manuel A, Beaupain D, Romeo PH, Raich N (2000) Molecular characterization of a novel gene family (PHTF) conserved from Drosophila to mammals. Genomics 64: 216-220. (Pubitemid 30191992)