Pseudopedobacter beijingensis gen. nov., sp. nov., isolated from coking wastewater activated sludge, and reclassification of Pedobacter saltans as Pseudopedobacter saltans comb. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 6, 2014, Pages 1853-1858

  Cao, Junwei ^a,b,c,d   Lai, Qiliang ^b,c,d   Li, Guizhen ^b,c,d   Shao, Zongze ^a,b,c,d  

^a HARBIN INSTITUTE OF TECHNOLOGY   (China)

^b State Key Laboratory Breeding Base of Marine Genetic Resource Third Institute of Oceanography SOA   (China)

^c Ministry of Natural Resources of the People's Republic of China   (China)

^d Key Laboratory of Marine Genetic Resources of Fujian Province   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FATTY ACID; MENAQUINONE; OXIDOREDUCTASE; PHOSPHATIDYLETHANOLAMINE; PHOSPHOLIPID; RNA 16S; SPHINGOLIPID;

ACTIVATED SLUDGE; ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; MICROBIAL CONSORTIUM; NONHUMAN; ORGANISMS BY PHYLOGENETIC POSITION; PEDOBACTER SALTAN; PRIORITY JOURNAL; PSEUDOPEDOBACTER BEIJINGENSIS; PSEUDOPEDOBACTER SALTAN; RNA SEQUENCE; SALINITY; SPHINGOBACTERIACEAE; TAXONOMY; TEMPERATURE; WASTE WATER;

BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; CHINA; COKE; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PEDOBACTER; PHOSPHATIDYLETHANOLAMINES; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; VITAMIN K 2; WASTE WATER;

EID: 84902665636     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.053991-0     Document Type: Article

References (18)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (editors) (1995). Short Protocols in Molecular Biology: a Compendium of Methods from Current Protocols in Molecular Biology, 3rd edn. New York: Wiley.
2. Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
3. Cao, J. W., Dong, C. M., Cao, H. B. & Shao, Z. Z. (2011). [Isolation of phenol-degrading bacteria from coking wastewater and their degradation gene]. Huan Jing Ke Xue 32, 560-566 (in Chinese).
4. Essam, T., Amin, M. A., El Tayeb, O., Mattiasson, B. & Guieysse, B. (2010). Kinetics and metabolic versatility of highly tolerant phenol degrading Alcaligenes strain TW1. J Hazard Mater 173, 783-788.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
6. Kates, M. (1986). Techniques of lipidology, 2nd edn. Amsterdam: Elsevier.
7. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
8. Lai, Q., Yuan, J., Gu, L. & Shao, Z. (2009). Marispirillum indicum gen. nov., sp. nov., isolated from a deep-sea environment. Int J Syst Evol Microbiol 59, 1278-1281.
9. Liu, C. & Shao, Z. (2005). Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55, 1181-1186.
10. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/ thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479, 297-306.
11. Rzhetsky, A. & Nei, M. (1992). A simple method for estimating and testing minimum evolution trees. Mol Biol Evol 9, 945-967.
12. Rzhetsky, A. & Nei, M. (1993). Theoretical foundation of the minimumevolution method of phylogenetic inference. Mol Biol Evol 10, 1073-1095.
13. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
14. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
15. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Newark, DE: MIDI.
16. Steyn, P. L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165-177.
17. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
18. Zimmermann, J. J., Langer, R. & Cooney, C. L. (1990). Specific plate assay for bacterial heparinase. Appl Environ Microbiol 56, 3593-3594.