메뉴 건너뛰기




Volumn 64, Issue PART 6, 2014, Pages 1913-1919

Description of Helicobacter valdiviensis sp. nov., an Epsilonproteobacteria isolated from wild bird faecal samples

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONIN 60; RNA 16S;

EID: 84902664295     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.057141-0     Document Type: Article
Times cited : (22)

References (35)
  • 3
    • 0028244450 scopus 로고
    • Phylogeny of Helicobacter isolates from bird and swine feces and description of Helicobacter pametensis sp. nov
    • Dewhirst, F. E., Seymour, C., Fraser, G. J., Paster, B. J. & Fox, J. G. (1994). Phylogeny of Helicobacter isolates from bird and swine feces and description of Helicobacter pametensis sp. nov. Int J Syst Bacteriol 44, 553-560.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 553-560
    • Dewhirst, F.E.1    Seymour, C.2    Fraser, G.J.3    Paster, B.J.4    Fox, J.G.5
  • 4
    • 0034519234 scopus 로고    scopus 로고
    • Recommended minimal standards for describing new species of the genus Helicobacter
    • Dewhirst, F. E., Fox, J. G. & On, S. L. (2000). Recommended minimal standards for describing new species of the genus Helicobacter. Int J Syst Evol Microbiol 50, 2231-2237.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 2231-2237
    • Dewhirst, F.E.1    Fox, J.G.2    On, S.L.3
  • 7
    • 33746060152 scopus 로고    scopus 로고
    • Helicobacter anseris sp. nov. and Helicobacter brantae sp. nov., isolated from feces of resident Canada geese in the greater Boston area
    • Fox, J. G., Taylor, N. S., Howe, S., Tidd, M., Xu, S., Paster, B. J. & Dewhirst, F. E. (2006). Helicobacter anseris sp. nov. and Helicobacter brantae sp. nov., isolated from feces of resident Canada geese in the greater Boston area. Appl Environ Microbiol 72, 4633-4637.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4633-4637
    • Fox, J.G.1    Taylor, N.S.2    Howe, S.3    Tidd, M.4    Xu, S.5    Paster, B.J.6    Dewhirst, F.E.7
  • 9
    • 0030986175 scopus 로고    scopus 로고
    • Strategy for the detection of Helicobacter species by amplification of 16S rRNA genes and identification of H. felis in a human gastric biopsy
    • Germani, Y., Dauga, C., Duval, P., Huerre, M., Levy, M., Pialoux, G., Sansonetti, P. & Grimont, P. A. D. (1997). Strategy for the detection of Helicobacter species by amplification of 16S rRNA genes and identification of H. felis in a human gastric biopsy. Res Microbiol 148, 315-326.
    • (1997) Res Microbiol , vol.148 , pp. 315-326
    • Germani, Y.1    Dauga, C.2    Duval, P.3    Huerre, M.4    Levy, M.5    Pialoux, G.6    Sansonetti, P.7    Grimont, P.A.D.8
  • 10
    • 0024417693 scopus 로고
    • Transfer of Campylobacter pylori and Campylobacter mustelae to Helicobacter gen. nov. as Helicobacter pylori comb. nov. and Helicobacter mustelae comb. nov., respectively
    • Goodwin, C. S., Armstrong, J. A., Chilvers, T., Peters, M., Collins, M. D., Sly, L., McConnell, W. & Harper, W. E. S. (1989). Transfer of Campylobacter pylori and Campylobacter mustelae to Helicobacter gen. nov. as Helicobacter pylori comb. nov. and Helicobacter mustelae comb. nov., respectively. Int J Syst Bacteriol 39, 397-405.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 397-405
    • Goodwin, C.S.1    Armstrong, J.A.2    Chilvers, T.3    Peters, M.4    Collins, M.D.5    Sly, L.6    McConnell, W.7    Harper, W.E.S.8
  • 12
    • 33947321293 scopus 로고    scopus 로고
    • Phylogenetic analysis of Helicobacter species based on partial gyrB gene sequences
    • Hannula, M. & Hänninen, M. L. (2007). Phylogenetic analysis of Helicobacter species based on partial gyrB gene sequences. Int J Syst Evol Microbiol 57, 444-449.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 444-449
    • Hannula, M.1    Hänninen, M.L.2
  • 13
    • 0031439759 scopus 로고    scopus 로고
    • Multiplex PCR for the identification of Arcobacter and differentiation of Arcobacter butzleri from other arcobacters
    • Harmon, K. M. & Wesley, I. V. (1997). Multiplex PCR for the identification of Arcobacter and differentiation of Arcobacter butzleri from other arcobacters. Vet Microbiol 58, 215-227.
    • (1997) Vet Microbiol , vol.58 , pp. 215-227
    • Harmon, K.M.1    Wesley, I.V.2
  • 15
    • 33645463746 scopus 로고    scopus 로고
    • Identification of Campylobacter spp. and discrimination from Helicobacter and Arcobacter spp. by direct sequencing of PCRamplified cpn60 sequences and comparison to cpnDB, a chaperonin reference sequence database
    • Hill, J. E., Paccagnella, A., Law, K., Melito, P. L., Woodward, D. L., Price, L., Leung, A. H., Ng, L. K., Hemmingsen, S. M. & Goh, S. H. (2012). Identification of Campylobacter spp. and discrimination from Helicobacter and Arcobacter spp. by direct sequencing of PCRamplified cpn60 sequences and comparison to cpnDB, a chaperonin reference sequence database. J Med Microbiol 55, 393-399.
    • (2012) J Med Microbiol , vol.55 , pp. 393-399
    • Hill, J.E.1    Paccagnella, A.2    Law, K.3    Melito, P.L.4    Woodward, D.L.5    Price, L.6    Leung, A.H.7    Ng, L.K.8    Hemmingsen, S.M.9    Goh, S.H.10
  • 16
    • 84863230041 scopus 로고    scopus 로고
    • Introducing EzTaxone: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
    • Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012). Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 716-721
    • Kim, O.-S.1    Cho, Y.-J.2    Lee, K.3    Yoon, S.-H.4    Kim, M.5    Na, H.6    Park, S.-C.7    Jeon, Y.S.8    Lee, J.-H.9
  • 17
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 18
    • 0011442841 scopus 로고    scopus 로고
    • Rapid identification by PCR of the genus Campylobacter and of five Campylobacter species enteropathogenic for man and animals
    • Linton, D., Owen, R. J. & Stanley, J. (1996). Rapid identification by PCR of the genus Campylobacter and of five Campylobacter species enteropathogenic for man and animals. Res Microbiol 147, 707-718.
    • (1996) Res Microbiol , vol.147 , pp. 707-718
    • Linton, D.1    Owen, R.J.2    Stanley, J.3
  • 19
    • 0032723152 scopus 로고    scopus 로고
    • Rapid identification of Campylobacter, Arcobacter, and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene
    • Marshall, S. M., Melito, P. L., Woodward, D. L., Johnson, W. M., Rodgers, F. G. & Mulvey, M. R. (1999). Rapid identification of Campylobacter, Arcobacter, and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene. J Clin Microbiol 37, 4158-4160.
    • (1999) J Clin Microbiol , vol.37 , pp. 4158-4160
    • Marshall, S.M.1    Melito, P.L.2    Woodward, D.L.3    Johnson, W.M.4    Rodgers, F.G.5    Mulvey, M.R.6
  • 20
    • 0023266440 scopus 로고
    • Hydrolysis of indoxyl acetate by Campylobacter species
    • Mills, C. K. & Gherna, R. L. (1987). Hydrolysis of indoxyl acetate by Campylobacter species. J Clin Microbiol 25, 1560-1561.
    • (1987) J Clin Microbiol , vol.25 , pp. 1560-1561
    • Mills, C.K.1    Gherna, R.L.2
  • 22
    • 9744247536 scopus 로고    scopus 로고
    • Description of 'Candidatus Helicobacter heilmannii' based on DNA sequence analysis of 16S rRNA and urease genes
    • O'Rourke, J. L., Solnick, J. V., Neilan, B. A., Seidel, K., Hayter, R., Hansen, L. M. & Lee, A. (2004). Description of 'Candidatus Helicobacter heilmannii' based on DNA sequence analysis of 16S rRNA and urease genes. Int J Syst Evol Microbiol 54, 2203-2211.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2203-2211
    • O'Rourke, J.L.1    Solnick, J.V.2    Neilan, B.A.3    Seidel, K.4    Hayter, R.5    Hansen, L.M.6    Lee, A.7
  • 23
    • 34547175582 scopus 로고    scopus 로고
    • Genus I. Helicobacter Goodwin, Armstrong, Chilvers, Peters, Collins, Sly, McConnell and Harper 1989a, 403, VP emend. Vandamme, Falsen, Rossau, Hoste, Segers, Tygat and De Ley
    • In 2nd edn, Edited by D. J. Brenner, N. P. Kreig, J. T. Staley & G. M. Garrity. New York: Springer
    • On, S. L. W., Lee, A., O'Rouke, J. L., Dewhirst, F. E., Paster, B. J., Fox, J. & Vandamme, P. (2005). Genus I. Helicobacter Goodwin, Armstrong, Chilvers, Peters, Collins, Sly, McConnell and Harper 1989a, 403, VP emend. Vandamme, Falsen, Rossau, Hoste, Segers, Tygat and De Ley. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, pp. 1169-1189. Edited by D. J. Brenner, N. P. Kreig, J. T. Staley & G. M. Garrity. New York: Springer.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1169-1189
    • On, S.L.W.1    Lee, A.2    O'Rouke, J.L.3    Dewhirst, F.E.4    Paster, B.J.5    Fox, J.6    Vandamme, P.7
  • 24
    • 0021926546 scopus 로고
    • Rapid urea hydrolysis by gastric Campylobacters
    • Owen, R. J., Martin, S. R. & Borman, P. (1985). Rapid urea hydrolysis by gastric Campylobacters. Lancet 1, 111.
    • (1985) Lancet , vol.1 , pp. 111
    • Owen, R.J.1    Martin, S.R.2    Borman, P.3
  • 26
    • 0034802339 scopus 로고    scopus 로고
    • Helicobacter ganmani sp. nov., a urease-negative anaerobe isolated from the intestines of laboratory mice
    • Robertson, B. R., O'Rourke, J. L., Vandamme, P., On, S. L. & Lee, A. (2001). Helicobacter ganmani sp. nov., a urease-negative anaerobe isolated from the intestines of laboratory mice. Int J Syst Evol Microbiol 51, 1881-1889.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1881-1889
    • Robertson, B.R.1    O'Rourke, J.L.2    Vandamme, P.3    On, S.L.4    Lee, A.5
  • 27
    • 84866173012 scopus 로고    scopus 로고
    • Helicobacter spp. other than H. pylori
    • Rossi, M. & Hänninen, M. L. (2012). Helicobacter spp. other than H. pylori. Helicobacter 17 (Suppl 1), 56-61.
    • (2012) Helicobacter , vol.17 , Issue.SUPPL. 1 , pp. 56-61
    • Rossi, M.1    Hänninen, M.L.2
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 13944267130 scopus 로고    scopus 로고
    • A novel enterohepatic Helicobacter species 'Helicobacter mastomyrinus' isolated from the liver and intestine of rodents
    • Shen, Z., Xu, S., Dewhirst, F. E., Paster, B. J., Pena, J. A., Modlin, I. M., Kidd, M. & Fox, J. G. (2005). A novel enterohepatic Helicobacter species 'Helicobacter mastomyrinus' isolated from the liver and intestine of rodents. Helicobacter 10, 59-70.
    • (2005) Helicobacter , vol.10 , pp. 59-70
    • Shen, Z.1    Xu, S.2    Dewhirst, F.E.3    Paster, B.J.4    Pena, J.A.5    Modlin, I.M.6    Kidd, M.7    Fox, J.G.8
  • 30
    • 0034095458 scopus 로고    scopus 로고
    • Helicobacter mesocricetorum sp. nov., a novel Helicobacter isolated from the feces of Syrian hamsters
    • Simmons, J. H., Riley, L. K., Besch-Williford, C. L. & Franklin, C. L. (2000). Helicobacter mesocricetorum sp. nov., a novel Helicobacter isolated from the feces of Syrian hamsters. J Clin Microbiol 38, 1811-1817.
    • (2000) J Clin Microbiol , vol.38 , pp. 1811-1817
    • Simmons, J.H.1    Riley, L.K.2    Besch-Williford, C.L.3    Franklin, C.L.4
  • 32
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 33
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 33747881868 scopus 로고    scopus 로고
    • Classification of Centers for Disease Control Group Eugonic Fermenter (EF)-4a and EF-4b as Neisseria animaloris sp. nov. and Neisseria zoodegmatis sp. nov., respectively
    • Vandamme, P., Holmes, B., Bercovier, H. & Coenye, T. (2006). Classification of Centers for Disease Control Group Eugonic Fermenter (EF)-4a and EF-4b as Neisseria animaloris sp. nov. and Neisseria zoodegmatis sp. nov., respectively. Int J Syst Evol Microbiol 56, 1801-1805.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1801-1805
    • Vandamme, P.1    Holmes, B.2    Bercovier, H.3    Coenye, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.