Modeling the zebrafish segmentation clock's gene regulatory network constrained by expression data suggests evolutionary transitions between oscillating and nonoscillating transcription

Genetics

Volumn 197, Issue 2, 2014, Pages 725-738

  Schwendinger Schreck, Jamie ^a   Kang, Yuan ^a   Holley, Scott A ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NOTCH RECEPTOR; TRANSCRIPTION FACTOR CLOCK; WNT PROTEIN; BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; ZEBRAFISH PROTEIN;

ANIMAL EXPERIMENT; ARTICLE; COMPUTER MODEL; CONTROLLED STUDY; EMBRYO; EMBRYO SEGMENTATION; GENE; GENE EXPRESSION; GENE REGULATORY NETWORK; GENE SILENCING; GENETIC ALGORITHM; GENETIC MODEL; GENETIC TRANSCRIPTION; HAIRY ENHANCER OF SPLIT RELATED GENE; HES6 GENE; NEGATIVE FEEDBACK; NONHUMAN; OSCILLATION; PRIORITY JOURNAL; PROTEIN DEGRADATION; QUANTITATIVE GENETICS; RNA TRANSLATION; ZEBRA FISH; ANIMAL; BIOLOGICAL RHYTHM; COMPUTER SIMULATION; EMBRYOLOGY; GENE EXPRESSION REGULATION; GENETICS; MORPHOGENESIS;

ANIMALS; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; BIOLOGICAL CLOCKS; BODY PATTERNING; CLOCK PROTEINS; COMPUTER SIMULATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE KNOCKDOWN TECHNIQUES; GENE REGULATORY NETWORKS; TRANSCRIPTION, GENETIC; ZEBRAFISH; ZEBRAFISH PROTEINS;

EID: 84902532362     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.114.163642     Document Type: Article

References (9)

1. CINQUIN, O., 2007 Repressor Dimerization in the Zebrafish Somitogenesis Clock. PLoS Computational Biology 3: e32.
2. GAJEWSKI, M., D. SIEGER, B. ALT, C. LEVE, S. HANS et al., 2003 Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafish. Development 130: 4269-4278.
3. HOLLEY, S. A., D. JÜLICH, G. J. RAUCH, R. GEISLER, C Nsslein-Volhard, 2002 her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis. Development 129: 1175-1183.
4. KAWAMURA, A., S. KOSHIDA, H. HIJIKATA, T. SAKAGUCHI, H. KONDOH et al., 2005 Zebrafish hairy/enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. Genes Dev 19: 1156-1161.
5. KEEGAN, B. R., J. L. FELDMAN, D. H. LEE, D. S. KOOS, R. K. HO et al., 2002 The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo. Development 129: 1623-1632.
6. SHANKARAN, S. S., D. SIEGER, C. SCHRÖTER, C. CZEPE, M.-C. PAULY et al., 2007 Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock. Developmental Biology 304: 615-632.
7. SIEGER, D., D. TAUTZ and M. GAJEWSKI, 2004 her11 is involved in the somitogenesis clock in zebrafish. Development Genes and Evolution 214: 393-406.
8. STULBERG, M. J., A. LIN, H. ZHAO and S. A. HOLLEY, 2012 Crosstalk between Fgf and Wnt signaling in the zebrafish tailbud. Dev Biol 369: 298-307.
9. ZHANG, L., C. KENDRICK, D. JULICH and S. A. HOLLEY, 2008 Cell cycle progression is required for zebrafish somite morphogenesis but not segmentation clock function. Development 135: 2065-2070.