Role of differential transport in an oscillatory enzyme reaction

Journal of Physical Chemistry B

Volumn 118, Issue 23, 2014, Pages 6092-6097

  Bánsági, Tamás ^a   Taylor, Annette F ^a  

^a UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

METABOLISM; PH EFFECTS; UREA;

ENZYMATIC PROCESS; ENZYME REACTION; LIMIT-CYCLE; NON-NEUTRAL; PH OSCILLATIONS; TRANSPORT COEFFICIENT; TRANSPORT RATE;

ENZYMES;

UREA; UREASE;

CHEMICAL MODEL; CHEMISTRY; ENZYME STABILITY; HYDROLYSIS; KINETICS; MEMBRANE; PH; STATISTICAL MODEL;

ENZYME STABILITY; HYDROGEN-ION CONCENTRATION; HYDROLYSIS; KINETICS; LINEAR MODELS; MEMBRANES; MODELS, CHEMICAL; UREA; UREASE;

EID: 84902532196     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp5019795     Document Type: Article

References (36)

1. Caplan, S. R.; Naparstek, A.; Zabusky, N. J. Chemical oscillations in a membrane Nature 1973, 245, 364-366
2. Hahn, H.-S.; Nitzan, A.; Ortoleva, P.; Ross, J. Threshold excitations, relaxation oscillations, and effect of noise in an enzyme reaction Proc. Natl. Acad. Sci. U. S. A. 1974, 71, 4067-4071
3. Zabusky, N.; Hardin, R. Phase transition, stability, and oscillations for an autocatalytic, single, first-order reaction in a membrane Phys. Rev. Lett. 1973, 31, 812-815
4. Chay, T. R. A model for biological oscillations Proc. Natl. Acad. Sci. U. S. A. 1981, 78, 2204-2207
5. Goldbeter, A.; Caplan, S. R. Oscillatory enzymes Annu. Rev. Biophys. Bioeng. 1976, 5, 449-476
6. Naparstek, A.; Thomas, D.; Roy Caplan, S. An experimental enzyme-membrane oscillator Biochim. Biophys. Acta (BBA)-Biomembranes 1973, 323, 643-646
7. Temminck Groll, J. Periodische Erscheinungen bei Fermenten als Folge ihrer kolloiden Beschaffenheit Colloid Polym. Sci. 1917, 21, 138-148
8. Friboulet, A.; Thomas, D. Electrical excitability of artificial enzyme membranes: III. Hysteresis and oscillations observed with immobilized acetylcholinesterase membranes Biophys. Chem. 1982, 16, 153-157
9. Goldbeter, A. Oscillatory enzyme reactions and Michaelis-Menten kinetics FEBS Lett. 2013, 587, 2778-2784
10. Shen, P.; Larter, R. Role of substrate inhibition kinetics in enzymatic chemical oscillations Biophys. J. 1994, 67, 1414-1428
11. Ohmori, T.; Nakaiwa, M.; Yamaguchi, T.; Kawamura, M.; Yang, R. Y. Self-sustained pH oscillations in a compartmentalized enzyme reactor system Biophys. Chem. 1997, 67, 51-57
12. Zagora, J.; Voslař, M.; Schreiberová, L.; Schreiber, I. Excitability in chemical and biochemical pH-autocatalytic systems Faraday Discuss. 2002, 120, 313-324
13. Ohmori, T.; Yang, R. Y. Self-sustained pH oscillations in immobilized proteolytic enzyme systems Biophys. Chem. 1996, 59, 87-94
14. Vanag, V. K.; Míguez, D. G.; Epstein, I. R. Designing an enzymatic oscillator: Bistability and feedback controlled oscillations with glucose oxidase in a continuous flow stirred tank reactor J. Chem. Phys. 2006, 125, 194515-194515
15. Stingl, K.; Altendorf, K.; Bakker, E. P. Acid survival of Helicobacter pylori: how does urease activity trigger cytoplasmic pH homeostasis? Trends Microbiol. 2002, 10, 70-74
16. +-ATPases Biophys. J. 2009, 96, 3850-3861
17. Beg, A. A.; Ernstrom, G. G.; Nix, P.; Davis, M. W.; Jorgensen, E. M. Protons Act as a Transmitter for Muscle Contraction in C. elegans Cell 2008, 132, 149-160
18. Mobley, H. L.; Mendz, G. L.; Hazell, S. L. Restriction and Modification Systems-Helicobacter pylori: Physiology and Genetics; ASM press: 2001.
19. Hu, G.; Pojman, J. A.; Scott, S. K.; Wrobel, M. M.; Taylor, A. F. Base-catalyzed feedback in the urea-urease reaction J. Phys. Chem. B 2010, 114, 14059-14063
20. Wrobel, M. M.; Bánsági, T., Jr.; Scott, S. K.; Taylor, A. F.; Bounds, C. O.; Carranzo, A.; Pojman, J. A. PH wave-front propagation in the urea-urease reaction Biophys. J. 2012, 103, 610-615
21. Chay, T. R. Proton transport across charged membrane and pH oscillations Biophys. J. 1980, 30, 99-118
22. Chay, T. R.; Zabusky, N. J. Dual-mode potential oscillations on an immobilized acetylcholinesterase membrane system J. Biol. Phys. 1983, 11, 27-33
23. Gray, P.; Scott, S. K. Chemical oscillations and instabilities: non-linear chemical kinetics; Clarendon Press. Oxford University Press: 1990.
24. MATLAB, version 7.12.0 (R2011a); The MathWorks Inc.: Natick, MA, 2011.
25. Ermentrout, B. Simulating, analyzing, and animating dynamical systems: a guide to XPPAUT for researchers and students; Siam: 2002; Vol. 14.
26. Turing, A. The Chemical Basis of Morphogenesis Philos. Trans. R. Soc. B 1952, 237, 37-72
27. Meinhardt, H. Models of biological pattern formation; Academic Press: London, 1982; Vol. 6.
28. Maini, P. K.; Woolley, T. E.; Baker, R. E.; Gaffney, E. A.; Lee, S. S. Turing's model for biological pattern formation and the robustness problem Interface Focus 2012, 2, 487-496
29. Schreiber, I.; Hung, Y.-F.; Ross, J. Categorization of some oscillatory enzymatic reactions J. Phys. Chem. 1996, 100, 8556-8566
30. Cussler, E. L. Diffusion: mass transfer in fluid systems; Cambridge university press: 2009.
31. Fuentes, M.; Kuperman, M.; Boissonade, J.; Dulos, E.; Gauffre, F.; De Kepper, P. Dynamical effects induced by long range activation in a nonequilibrium reaction-diffusion system Phys. Rev. E 2002, 66, 056205
32. Boissonade, J.; De Kepper, P. Multiple types of spatio-temporal oscillations induced by differential diffusion in the Landolt reaction Phys. Chem. Chem. Phys. 2011, 13, 4132-4137
33. Benyaich, K.; Erneux, T.; Métens, S.; Villain, S.; Borckmans, P. Spatio-temporal behaviors of a clock reaction in an open gel reactor Chaos: An Interdisciplinary Journal of Nonlinear Science 2006, 16, 037109
34. Szalai, I. Linear diffusive feed approach to explaining long range activation induced oscillations Reaction Kinetics, Mechanisms and Catalysis 2014, 111, 431-442
35. Strugatsky, D.; McNulty, R.; Munson, K.; Chen, C.-K.; Soltis, S. M.; Sachs, G.; Luecke, H. Structure of the proton-gated urea channel from the gastric pathogen Helicobacter pylori Nature 2012, 493, 255-258
36. Miller, M. B.; Bassler, B. L. Quorum sensing in bacteria Annu. Rev. Microbiol. 2001, 55, 165-199