Fast-protein-cluster: Parallel and optimized clustering of large-scale protein modeling data

Bioinformatics

Volumn 30, Issue 12, 2014, Pages 1774-1776

  Hung, Ling Hong ^a   Samudrala, Ram ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHEMICAL STRUCTURE; CLUSTER ANALYSIS; COMPUTER PROGRAM; PROTEIN CONFORMATION;

ALGORITHMS; CLUSTER ANALYSIS; MODELS, MOLECULAR; PROTEIN CONFORMATION; SOFTWARE;

EID: 84902436446     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu098     Document Type: Article

References (5)

1. Hung, L.H. and Samudrala, R. (2012) Accelerated protein structure comparison using TM-score-GPU. Bioinformatics, 28, 2191-2192.
2. Jamroz, M. and Kolinski, A. (2013) ClusCo: clustering and comparison of protein models. BMC Bioinformatics, 14, 62.
3. Mullner, D. (2013) fastcluster: Fast hierarchical, agglomerative clustering routines for R and Python. J. Stat. Softw., 53, 1-18.
4. Theobald, D.L. (2005) Rapid calculation of RMSDs using a quaternion-based characteristic polynomial. Acta Crystallogr. A, 61, 478-480.
5. Zhang, Y. and Skolnick, J. (2004) SPICKER: a clustering approach to identify near-native protein folds. J. Comput. Chem., 25, 865-871.