메뉴 건너뛰기




Volumn 9, Issue 5, 2014, Pages

Adaptation of a cyanobacterium to a biochemically rich environment in experimental evolution as an initial step toward a chloroplast-like state

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOTROPHY; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL MEMBRANE; BACTERIAL STRAIN; CARBOXYSOME; CELL ORGANELLE; CHLOROPLAST; CONTROLLED STUDY; CULTURE MEDIUM; CYANOBACTERIUM; EVOLUTIONARY ADAPTATION; GROWTH RATE; MATHEMATICAL MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOSYNTHESIS; QUANTITATIVE ANALYSIS; SYNECHOCYSTIS; ADAPTATION; ALGORITHM; ENVIRONMENT; EVOLUTION; HIGH THROUGHPUT SEQUENCING; METABOLISM; PHYSIOLOGY; THEORETICAL MODEL;

EID: 84902183772     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0098337     Document Type: Article
Times cited : (10)

References (40)
  • 1
    • 0037264370 scopus 로고    scopus 로고
    • Genomics and chloroplast evolution: What did cyanobacteria do for plants?
    • Raven JA, Allen JF (2003) Genomics and chloroplast evolution: what did cyanobacteria do for plants? Genome Biol 4: 209.
    • (2003) Genome Biol , vol.4 , pp. 209
    • Raven, J.A.1    Allen, J.F.2
  • 2
    • 0032743643 scopus 로고    scopus 로고
    • Annotated English translation of Mereschkowsky's 1905 paper 'Uber Natur und Ursprung der Chromatophoren im Pflanzenreiche
    • DOI 10.1017/S0967026299002231
    • Martin W, Kowallik KV (1999) Annotated English translation of Mereschkowsky's 1905 paper 'Uber Natur und Ursprung der Chromatophoren im Pflanzenreiche. Eur J Phycol 34: 287-295. (Pubitemid 29496640)
    • (1999) European Journal of Phycology , vol.34 , Issue.3 , pp. 287-295
    • Martin, W.1    Kowallik, K.V.2
  • 3
    • 0001204463 scopus 로고
    • Über Natur und Ursprung der Chromatophoren im Pflanzenreiche
    • Mereschkowsky C (1905) Über Natur und Ursprung der Chromatophoren im Pflanzenreiche. Biol Centralbl 25: 593-604.
    • (1905) Biol Centralbl , vol.25 , pp. 593-604
    • Mereschkowsky, C.1
  • 8
    • 46849114334 scopus 로고    scopus 로고
    • On the origin of plants and relations to contemporary cyanobacterial-plant symbioses
    • Bergman B, Zheng WW, Klint J, Ran L (2008) On the origin of plants and relations to contemporary cyanobacterial-plant symbioses. Plant Biotechnol-Nar 25: 213-220. (Pubitemid 351956863)
    • (2008) Plant Biotechnology , vol.25 , Issue.3 , pp. 213-220
    • Bergman, B.1    Zheng, W.-W.2    Klint, J.3    Ran, L.4
  • 9
    • 77957024978 scopus 로고
    • Construction of Specific Mutations in Photosystem-Ii Photosynthetic Reaction Center by Genetic-Engineering Methods in Synechocystis-6803
    • Williams JGK (1988) Construction of Specific Mutations in Photosystem-Ii Photosynthetic Reaction Center by Genetic-Engineering Methods in Synechocystis-6803. Method Enzymol 167: 766-778.
    • (1988) Method Enzymol , vol.167 , pp. 766-778
    • Williams, J.G.K.1
  • 10
    • 0023428372 scopus 로고
    • Genetic-Analysis of Amino-Acid-Transport in the Facultatively Heterotrophic Cyanobacterium Synechocystis sp Strain 6803
    • Labarre J, Thuriaux P, Chauvat F (1987) Genetic-Analysis of Amino-Acid-Transport in the Facultatively Heterotrophic Cyanobacterium Synechocystis sp Strain 6803. J Bacteriol 169: 4668-4673.
    • (1987) J Bacteriol , vol.169 , pp. 4668-4673
    • Labarre, J.1    Thuriaux, P.2    Chauvat, F.3
  • 11
    • 0025221924 scopus 로고
    • Mutational and Kinetic-Analysis of Basic-Amino-Acid Transport in the Cyanobacterium Synechocystis sp PCC-6803
    • Flores E, Muropastor AM (1990) Mutational and Kinetic-Analysis of Basic-Amino-Acid Transport in the Cyanobacterium Synechocystis sp PCC-6803. Arch Microbiol 154: 521-527.
    • (1990) Arch Microbiol , vol.154 , pp. 521-527
    • Flores, E.1    Muropastor, A.M.2
  • 12
    • 36348974492 scopus 로고    scopus 로고
    • Glycine accumulation is toxic for the cyanobacterium Synechocystis sp. strain PCC 6803, but can be compensated by supplementation with magnesium ions
    • DOI 10.1111/j.1574-6968.2007.00960.x
    • Eisenhut M, Bauwe H, Hagemann M (2007) Glycine accumulation is toxic for the cyanobacterium Synechocystis sp strain PCC 6803, but can be compensated by supplementation with magnesium ions. Fems Microbiol Lett 277: 232-237. (Pubitemid 350145579)
    • (2007) FEMS Microbiology Letters , vol.277 , Issue.2 , pp. 232-237
    • Eisenhut, M.1    Bauwe, H.2    Hagemann, M.3
  • 13
    • 0030613368 scopus 로고    scopus 로고
    • Experimental evolution in Chlamydomonas 2. Genetic variation in strongly contrasted environments
    • Bell G, Reboud X (1997) Experimental evolution in Chlamydomonas 2. Genetic variation in strongly contrasted environments. Heredity 78: 498-506.
    • (1997) Heredity , vol.78 , pp. 498-506
    • Bell, G.1    Reboud, X.2
  • 14
    • 0030613371 scopus 로고    scopus 로고
    • Experimental evolution in Chlamydomonas 1. Short-term selection in uniform and diverse environments
    • Bell G (1997) Experimental evolution in Chlamydomonas 1. Short-term selection in uniform and diverse environments. Heredity 78: 490-497.
    • (1997) Heredity , vol.78 , pp. 490-497
    • Bell, G.1
  • 15
    • 85047678881 scopus 로고    scopus 로고
    • Experimental evolution in Chlamydomonas 3. Evolution of specialist and generalist types in environments that vary in space and time
    • Reboud X, Bell G (1997) Experimental evolution in Chlamydomonas 3. Evolution of specialist and generalist types in environments that vary in space and time. Heredity 78: 507-514.
    • (1997) Heredity , vol.78 , pp. 507-514
    • Reboud, X.1    Bell, G.2
  • 16
    • 78650663550 scopus 로고    scopus 로고
    • Single-cell isolation and cloning of Tetrahymena thermophila cells with a fluorescence-activated cell sorter
    • Mori K, Kashiwagi A, Yomo T (2011) Single-cell isolation and cloning of Tetrahymena thermophila cells with a fluorescence-activated cell sorter. J Eukaryot Microbiol 58: 37-42.
    • (2011) J Eukaryot Microbiol , vol.58 , pp. 37-42
    • Mori, K.1    Kashiwagi, A.2    Yomo, T.3
  • 17
    • 0015076683 scopus 로고
    • Purification and properties of unicellular blue-green algae (order Chroococcales)
    • Stanier RY, Kunisawa R, Mandel M, Cohen-Bazire G (1971) Purification and properties of unicellular blue-green algae (order Chroococcales). Bacteriol Rev 35: 171-205.
    • (1971) Bacteriol Rev , vol.35 , pp. 171-205
    • Stanier, R.Y.1    Kunisawa, R.2    Mandel, M.3    Cohen-Bazire, G.4
  • 18
    • 79951938948 scopus 로고    scopus 로고
    • Cooperative adaptation to establishment of a synthetic bacterial mutualism
    • Hosoda K, Suzuki S, Yamauchi Y, Shiroguchi Y, Kashiwagi A, et al. (2011) Cooperative adaptation to establishment of a synthetic bacterial mutualism. PLoS One 6: e17105.
    • (2011) PLoS One , vol.6
    • Hosoda, K.1    Suzuki, S.2    Yamauchi, Y.3    Shiroguchi, Y.4    Kashiwagi, A.5
  • 19
    • 0030828527 scopus 로고    scopus 로고
    • Mutation in a novel gene required for photomixotrophic growth leads to enhanced photoautotrophic growth of Synechocystis sp. PCC 6803
    • Hihara Y, Ikeuchi M (1997) Mutation in a novel gene required for photomixotrophic growth leads to enhanced photoautotrophic growth of Synechocystis sp. PCC 6803. Photosynth Res 53: 243-252. (Pubitemid 27523371)
    • (1997) Photosynthesis Research , vol.53 , Issue.2-3 , pp. 243-252
    • Hihara, Y.1    Ikeuchi, M.2
  • 20
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt DC, Zhang QY, Larson DE, Shen D, McLellan MD, et al. (2012) VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Research 22: 568-576.
    • (2012) Genome Research , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.Y.2    Larson, D.E.3    Shen, D.4    McLellan, M.D.5
  • 21
    • 84868628441 scopus 로고    scopus 로고
    • Systematic characterization of hypothetical proteins in Synechocystis sp. PCC 6803 reveals proteins functionally relevant to stress responses
    • Qiao J, Shao M, Chen L, Wang J, Wu G, et al. (2013) Systematic characterization of hypothetical proteins in Synechocystis sp. PCC 6803 reveals proteins functionally relevant to stress responses. Gene 512: 6-15.
    • (2013) Gene , vol.512 , pp. 6-15
    • Qiao, J.1    Shao, M.2    Chen, L.3    Wang, J.4    Wu, G.5
  • 22
    • 0028294683 scopus 로고
    • A gene (ccmA) required for carboxysome formation in the cyanobacterium Synechocystis sp. strain PCC6803
    • Ogawa T, Marco E, Orus MI (1994) A Gene (ccma) Required for Carboxysome Formation in the Cyanobacterium Synechocystis sp Strain PCC6803. J Bacteriol 176: 2374-2378. (Pubitemid 24118188)
    • (1994) Journal of Bacteriology , vol.176 , Issue.8 , pp. 2374-2378
    • Ogawa, T.1    Marco, E.2    Orus, M.I.3
  • 24
    • 79957948242 scopus 로고    scopus 로고
    • Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population
    • Khan AI, Dinh DM, Schneider D, Lenski RE, Cooper TF (2011) Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population. Science 332: 1193-1196.
    • (2011) Science , vol.332 , pp. 1193-1196
    • Khan, A.I.1    Dinh, D.M.2    Schneider, D.3    Lenski, R.E.4    Cooper, T.F.5
  • 25
    • 84877896488 scopus 로고    scopus 로고
    • Programmed Heterogeneity: Epigenetic Mechanisms in Bacteria
    • Casadesus J, Low DA (2013) Programmed Heterogeneity: Epigenetic Mechanisms in Bacteria. Journal of Biological Chemistry 288: 13929-13935.
    • (2013) Journal of Biological Chemistry , vol.288 , pp. 13929-13935
    • Casadesus, J.1    Low, D.A.2
  • 26
    • 0024633728 scopus 로고
    • Mutagenesis by random cloning of an Escherichia coli kanamycin resistance gene into the genome of the cyanobacterium Synechocystis PCC 6803: Selection of mutants defective in photosynthesis
    • Chauvat F, Rouet P, Bottin H, Boussac A (1989) Mutagenesis by random cloning of an Escherichia coli kanamycin resistance gene into the genome of the cyanobacterium Synechocystis PCC 6803: selection of mutants defective in photosynthesis. Mol Gen Genet 216: 51-59.
    • (1989) Mol Gen Genet , vol.216 , pp. 51-59
    • Chauvat, F.1    Rouet, P.2    Bottin, H.3    Boussac, A.4
  • 27
    • 84863115403 scopus 로고    scopus 로고
    • Identification of substrain-specific mutations by massively parallel whole-genome resequencing of Synechocystis sp. PCC 6803
    • Kanesaki Y, Shiwa Y, Tajima N, Suzuki M, Watanabe S, et al. (2012) Identification of substrain-specific mutations by massively parallel whole-genome resequencing of Synechocystis sp. PCC 6803. DNA Res 19: 67-79.
    • (2012) DNA Res , vol.19 , pp. 67-79
    • Kanesaki, Y.1    Shiwa, Y.2    Tajima, N.3    Suzuki, M.4    Watanabe, S.5
  • 28
    • 0024278871 scopus 로고
    • Extended Monod Kinetics for Substrate, Product, and Cell-Inhibition
    • Han K, Levenspiel O (1988) Extended Monod Kinetics for Substrate, Product, and Cell-Inhibition. Biotechnol Bioeng 32: 430-437.
    • (1988) Biotechnol Bioeng , vol.32 , pp. 430-437
    • Han, K.1    Levenspiel, O.2
  • 29
    • 0024281037 scopus 로고
    • Free Fitness That Always Increases in Evolution
    • Iwasa Y (1988) Free Fitness That Always Increases in Evolution. Journal of Theoretical Biology 135: 265-281.
    • (1988) Journal of Theoretical Biology , vol.135 , pp. 265-281
    • Iwasa, Y.1
  • 30
    • 0001503634 scopus 로고
    • Simple-Model for Balance between Selection and Mutation
    • Kingman JFC (1978) Simple-Model for Balance between Selection and Mutation. Journal of Applied Probability 15: 1-12.
    • (1978) Journal of Applied Probability , vol.15 , pp. 1-12
    • Kingman, J.F.C.1
  • 32
    • 40749097777 scopus 로고    scopus 로고
    • Genetic basis of fitness differences in natural populations
    • DOI 10.1038/nature06737, PII NATURE06737
    • Ellegren H, Sheldon BC (2008) Genetic basis of fitness differences in natural populations. Nature 452: 169-175. (Pubitemid 351380250)
    • (2008) Nature , vol.452 , Issue.7184 , pp. 169-175
    • Ellegren, H.1    Sheldon, B.C.2
  • 36
    • 80052318679 scopus 로고    scopus 로고
    • Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface
    • Morris JJ, Johnson ZI, Szul MJ, Keller M, Zinser ER (2011) Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface. Plos One 6: e16805.
    • (2011) Plos One , vol.6
    • Morris, J.J.1    Johnson, Z.I.2    Szul, M.J.3    Keller, M.4    Zinser, E.R.5
  • 37
    • 84860511582 scopus 로고    scopus 로고
    • The Black Queen Hypothesis: Evolution of dependencies through adaptive gene loss
    • Morris JJ, Lenski RE, Zinser ER (2012) The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss. MBio 3: e00036-00012.
    • (2012) MBio , vol.3
    • Morris, J.J.1    Lenski, R.E.2    Zinser, E.R.3
  • 39
    • 3543048039 scopus 로고    scopus 로고
    • The accumulation and degradation dynamics of cyanophycin in cyanobacterial cells grown in symbiotic associations with plant tissues and cells
    • DOI 10.1023/A:1024252116667
    • Gorelova OA, Kleimenov SY (2003) The accumulation and degradation dynamics of cyanophycin in cyanobacterial cells grown in symbiotic associations with plant tissues and cells. Microbiology 72: 318-326. (Pubitemid 39009144)
    • (2003) Microbiology , vol.72 , Issue.3 , pp. 318-326
    • Gorelova, O.A.1    Kleimenov, S.Yu.2
  • 40
    • 18744400768 scopus 로고    scopus 로고
    • Colonization of roots of rice (Oryza sativa) by symbiotic Nostoc strains
    • DOI 10.1046/j.1469-8137.2002.00534.x
    • Nilsson M, Bhattacharya J, Rai AN, Bergman B (2002) Colonization of roots of rice (Oryza sativa) by symbiotic Nostoc strains. New Phytol 156: 517-525. (Pubitemid 35456818)
    • (2002) New Phytologist , vol.156 , Issue.3 , pp. 517-525
    • Nilsson, M.1    Bhattacharya, J.2    Rai, A.N.3    Bergman, B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.