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Volumn 25, Issue 5-6, 2014, Pages 235-243

Exome sequencing and arrayCGH detection of gene sequence and copy number variation between ILS and ISS mouse strains

Author keywords

[No Author keywords available]

Indexed keywords

G PROTEIN COUPLED RECEPTOR; GLUCURONOSYLTRANSFERASE; GUANINE NUCLEOTIDE EXCHANGE FACTOR; MEMBRANE PROTEIN;

EID: 84902141569     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-014-9502-6     Document Type: Article
Times cited : (5)

References (45)
  • 2
    • 0032421647 scopus 로고    scopus 로고
    • Development of congenics for hypnotic sensitivity to ethanol by QTL-marker-assisted counter selection
    • 10.1007/s003359900908
    • Bennet B, Johnson TE (1998) Development of congenics for hypnotic sensitivity to ethanol by QTL-marker-assisted counter selection. Mamm Genome 9:969-974
    • (1998) Mamm Genome , vol.9 , pp. 969-974
    • Bennet, B.1    Johnson, T.E.2
  • 3
    • 0036171768 scopus 로고    scopus 로고
    • Reciprocal congenics defining individual quantitative trait loci for sedative/hypnotic sensitivity to ethanol
    • 10.1111/j.1530-0277.2002.tb02519.x
    • Bennett B, Beeson M, Gordon L, Johnson TE (2000a) Reciprocal congenics defining individual quantitative trait loci for sedative/hypnotic sensitivity to ethanol. Alcohol Clin Exp Res 26:149-157
    • (2000) Alcohol Clin Exp Res , vol.26 , pp. 149-157
    • Bennett, B.1    Beeson, M.2    Gordon, L.3    Johnson, T.E.4
  • 4
    • 0036860323 scopus 로고    scopus 로고
    • Genetic dissection of quantitative trait loci specifying sensitivity to ethanol: Mapping with interval-specific congenic recombinant lines
    • 10.1111/j.1530-0277.2002.tb02463.x
    • Bennett B, Beeson M, Gordon L, Carosone-Link P, Johnson TE (2000b) Genetic dissection of quantitative trait loci specifying sensitivity to ethanol: mapping with interval-specific congenic recombinant lines. Alcohol Clin Exp Res 26:1615-1624
    • (2000) Alcohol Clin Exp Res , vol.26 , pp. 1615-1624
    • Bennett, B.1    Beeson, M.2    Gordon, L.3    Carosone-Link, P.4    Johnson, T.E.5
  • 5
    • 80054770302 scopus 로고    scopus 로고
    • Economic costs of excessive alcohol consumption in the U.S., 2006
    • 22011424 10.1016/j.amepre.2011.06.045
    • Bouchery EE, Harwood HJ, Sacks JJ, Simon CJ, Brewer RD (2011) Economic costs of excessive alcohol consumption in the U.S., 2006. Am J Prev Med 41(5):516-524
    • (2011) Am J Prev Med , vol.41 , Issue.5 , pp. 516-524
    • Bouchery, E.E.1    Harwood, H.J.2    Sacks, J.J.3    Simon, C.J.4    Brewer, R.D.5
  • 8
    • 32144442044 scopus 로고
    • A review of research using short-sleep and long-sleep mice
    • G.E. McClearn R.A. Deitrich V.G. Erwin (eds) U.S. Government Printing Office Washington, DC
    • Collins AC (1981) A review of research using short-sleep and long-sleep mice. In: McClearn GE, Deitrich RA, Erwin VG (eds) Development of animal models as pharmacogenetic tools. U.S. Government Printing Office, Washington, DC, pp 161-170
    • (1981) Development of Animal Models As Pharmacogenetic Tools , pp. 161-170
    • Collins, A.C.1
  • 9
    • 51649107515 scopus 로고    scopus 로고
    • Rare chromosomal deletions and duplications increase risk of schizophrenia
    • 10.1038/455178a
    • Consortium International Schizophrenia (2008) Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature 455:178-179
    • (2008) Nature , vol.455 , pp. 178-179
    • Consortium, I.S.1
  • 10
    • 62549099097 scopus 로고    scopus 로고
    • Copy number variation in the mouse genome: Implications for the mouse as a model organism for human disease
    • 1:CAS:528:DC%2BD1MXjtF2htr4%3D 2920193
    • Cutler G, Kassner PD (2009) Copy number variation in the mouse genome: implications for the mouse as a model organism for human disease. Cytogenet Genome Res 123(1-4):297-306
    • (2009) Cytogenet Genome Res , vol.123 , Issue.1-4 , pp. 297-306
    • Cutler, G.1    Kassner, P.D.2
  • 11
    • 84874165110 scopus 로고    scopus 로고
    • Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep Mice
    • 1:CAS:528:DC%2BC3sXmt1ShtL0%3D 3581861 23433184 10.1111/gbb.12018
    • Darlington TM, Ehringer MA, Larson C, Phang TL, Radcliffe RA (2013) Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep Mice. Genes Brain Behav 12:263-274
    • (2013) Genes Brain Behav , vol.12 , pp. 263-274
    • Darlington, T.M.1    Ehringer, M.A.2    Larson, C.3    Phang, T.L.4    Radcliffe, R.A.5
  • 12
    • 74249088463 scopus 로고    scopus 로고
    • Recurrent microdeletions at 15q11.2 and 16p13.11 predispose to idiopathic generalized epilepsies
    • 2801323 19843651 10.1093/brain/awp262
    • de Kovel CG, Trucks H, Helbig I, Mefford HC, Baker C, Leu C, Kluck C, Muhle H, von Spiczak S, Ostertag P, Obermeier T, Kleefuß-Lie AA, Hallmann K, Steffens M, Gaus V, Klein KM, Hamer HM, Rosenow F, Brilstra EH, K-N Trenité D, Marielle Swinkels MEM, Weber YG, Unterberger I, Zimprich F, Urak L, Feucht M, Fuchs K, Møller RS, Hjalgrim H, De Jonghe P, Suls A, Rückert I-M, Wichmann H-E, Franke A, Schreiber S, Nürnberg P, Elger CE, Lerche H, Stephani U, Koeleman BPC, Lindhout D, Eichler EE, Sander T (2010) Recurrent microdeletions at 15q11.2 and 16p13.11 predispose to idiopathic generalized epilepsies. Brain 133:23-32
    • (2010) Brain , vol.133 , pp. 23-32
    • De Kovel, C.G.1    Trucks, H.2    Helbig, I.3    Mefford, H.C.4    Baker, C.5    Leu, C.6    Kluck, C.7    Muhle, H.8    Von Spiczak, S.9    Ostertag, P.10
  • 13
    • 0001900348 scopus 로고
    • Selective breeding of mice and rats for initial sensitivity to ethanol: Contributions to understanding ethanol's actions
    • R.A. Deitrich A.A. Pawlowski (eds) National Institute of Alcohol Abuse and Alcoholism Rockville
    • Deitrich RA (1990) Selective breeding of mice and rats for initial sensitivity to ethanol: contributions to understanding ethanol's actions. In: Deitrich RA, Pawlowski AA (eds) Initial Sensitivity to Alcohol. National Institute of Alcohol Abuse and Alcoholism, Rockville, pp 7-60
    • (1990) Initial Sensitivity to Alcohol , pp. 7-60
    • Deitrich, R.A.1
  • 14
    • 84919638855 scopus 로고    scopus 로고
    • The genetics of substance use and substance use disorders
    • K. Yong-Kyu (eds) Springer New York 10.1007/978-0-387-76727-7-29
    • Dick DM, Prescott C, McGue M (2009) The genetics of substance use and substance use disorders. In: Yong-Kyu K (ed) Handbook of behavior genetics. Springer, New York, pp 433-453
    • (2009) Handbook of Behavior Genetics , pp. 433-453
    • Dick, D.M.1    Prescott, C.2    McGue, M.3
  • 16
    • 0042852194 scopus 로고    scopus 로고
    • Genomic approaches to the genetics of alcoholism. Alcohol Res
    • Ehringer MA, Sikela JM (2002) Genomic approaches to the genetics of alcoholism. Alcohol Res. Health 26:181-192
    • (2002) Health , vol.26 , pp. 181-192
    • Ehringer, M.A.1    Sikela, J.M.2
  • 18
    • 0036862139 scopus 로고    scopus 로고
    • Fine mapping of polymorphic alcohol-related quantitative trait loci candidate genes using interval-specific congenic recombinant mice
    • Ehringer MA, Thompson J, Conroy O, Yang F, Hink R, Bennett B, Johnson TE, Sikela JM (2002) Fine mapping of polymorphic alcohol-related quantitative trait loci candidate genes using interval-specific congenic recombinant mice. Alcohol Clin Exp Res 26:160-1603
    • (2002) Alcohol Clin Exp Res , vol.26 , pp. 160-1603
    • Ehringer, M.A.1    Thompson, J.2    Conroy, O.3    Yang, F.4    Hink, R.5    Bennett, B.6    Johnson, T.E.7    Sikela, J.M.8
  • 19
    • 2942522762 scopus 로고    scopus 로고
    • The 12-month prevalence and trends in DSM-IV alcohol abuse and dependence: United States
    • 15194200 10.1016/j.drugalcdep.2004.02.004
    • Grant BF, Dawson DA, Stinson FS, Chou SP, Dufour MC, Pickering RP (2004) The 12-month prevalence and trends in DSM-IV alcohol abuse and dependence: United States. Drug Alcohol Depend 74(3):223-234
    • (2004) Drug Alcohol Depend , vol.74 , Issue.3 , pp. 223-234
    • Grant, B.F.1    Dawson, D.A.2    Stinson, F.S.3    Chou, S.P.4    Dufour, M.C.5    Pickering, R.P.6
  • 20
    • 67649774119 scopus 로고    scopus 로고
    • Major urinary protein-1 increases energy expenditure and improves glucose intolerance through enhancing mitochondrial function in skeletal muscle of diabetic mice
    • 1:CAS:528:DC%2BD1MXlvV2jtL0%3D 2682853 19336396 10.1074/jbc.M109.001107
    • Hui X, Zhu W, Wang Y, Lam KS, Zhang J, Wu D, Kraegen EW, Li Y, Xu A (2009) Major urinary protein-1 increases energy expenditure and improves glucose intolerance through enhancing mitochondrial function in skeletal muscle of diabetic mice. J Biol Chem 284(21):14050-14057
    • (2009) J Biol Chem , vol.284 , Issue.21 , pp. 14050-14057
    • Hui, X.1    Zhu, W.2    Wang, Y.3    Lam, K.S.4    Zhang, J.5    Wu, D.6    Kraegen, E.W.7    Li, Y.8    Xu, A.9
  • 22
    • 84872594118 scopus 로고    scopus 로고
    • Proteome analysis of metabolic proteins (pI 4-7) in barley (Hordeum vulgare) malts and initial application in malt quality discrimination
    • 1:CAS:528:DC%2BC38XhslKhs73K 23198685 10.1021/jf3034418
    • Jin Z, Mu YW, Sun JY, Li XM, Gao XL, Lu J (2013) Proteome analysis of metabolic proteins (pI 4-7) in barley (Hordeum vulgare) malts and initial application in malt quality discrimination. J Agric Food Chem 61(2):402-409
    • (2013) J Agric Food Chem , vol.61 , Issue.2 , pp. 402-409
    • Jin, Z.1    Mu, Y.W.2    Sun, J.Y.3    Li, X.M.4    Gao, X.L.5    Lu, J.6
  • 23
    • 0034994447 scopus 로고    scopus 로고
    • α-amylase expressed in human liver is encoded by the AMY-2B gene identified in tumorous tissues
    • 10.1016/S0009-8981(01)00501-0
    • Koyama I, Komine S, Iino N, Hokari S, Igarashi S, Alpers DH, Komoda T (2001) α-amylase expressed in human liver is encoded by the AMY-2B gene identified in tumorous tissues. Clin Chim Acta 309:79-83
    • (2001) Clin Chim Acta , vol.309 , pp. 79-83
    • Koyama, I.1    Komine, S.2    Iino, N.3    Hokari, S.4    Igarashi, S.5    Alpers, D.H.6    Komoda, T.7
  • 24
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • 1:CAS:528:DC%2BD1MXot1Cjtbo%3D 2705234 19451168 10.1093/bioinformatics/ btp324
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 25:1754-1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 25
    • 25844441027 scopus 로고    scopus 로고
    • Cerebellar gene expression profiling and eQTL analysis in inbred mouse strains selected for ethanol sensitivity
    • 1:CAS:528:DC%2BD2MXhtVKls77N 16205357 10.1097/01.alc.0000179376.27331.ac
    • MacLaren EJ, Sikela JM (2005) Cerebellar gene expression profiling and eQTL analysis in inbred mouse strains selected for ethanol sensitivity. Alcohol Clin Exp Res 29:1568-1579
    • (2005) Alcohol Clin Exp Res , vol.29 , pp. 1568-1579
    • Maclaren, E.J.1    Sikela, J.M.2
  • 26
    • 32144455860 scopus 로고    scopus 로고
    • Expression profiling identifies novel candidate genes for ethanol sensitivity QTLs
    • 1:CAS:528:DC%2BD28Xht1Cms7k%3D 2677977 16465594 10.1007/s00335-005-0065-4
    • MacLaren EJ, Bennett B, Johnson TE, Sikela JM (2006) Expression profiling identifies novel candidate genes for ethanol sensitivity QTLs. Mamm Genome 17:147-156
    • (2006) Mamm Genome , vol.17 , pp. 147-156
    • Maclaren, E.J.1    Bennett, B.2    Johnson, T.E.3    Sikela, J.M.4
  • 27
    • 78149443848 scopus 로고    scopus 로고
    • Individual differences in AMY1 gene copy number, salivary α-amylase levels, and the perception of oral starch
    • 2954178 20967220 10.1371/journal.pone.0013352
    • Mandel AL, Peyrot des Gachons C, Plank KL, Alarcon S, Breslin PAS (2010) Individual differences in AMY1 gene copy number, salivary α-amylase levels, and the perception of oral starch. PLoS One 5(10):e13352
    • (2010) PLoS One , vol.5 , Issue.10 , pp. 13352
    • Mandel, A.L.1    Peyrot Des Gachons, C.2    Plank, K.L.3    Alarcon, S.4    Breslin, P.A.S.5
  • 28
    • 0028932246 scopus 로고
    • Use of repeated measures in an analysis of ethanol-induced loss of righting reflex in inbred long-sleep and short-sleep mice
    • 1:CAS:528:DyaK2MXmtFygtrY%3D 7625561 10.1111/j.1530-0277.1995.tb01506.x
    • Markel PD, DeFries JC, Johnson TE (1995) Use of repeated measures in an analysis of ethanol-induced loss of righting reflex in inbred long-sleep and short-sleep mice. Alcohol Clin Exp Res 19:299-304
    • (1995) Alcohol Clin Exp Res , vol.19 , pp. 299-304
    • Markel, P.D.1    Defries, J.C.2    Johnson, T.E.3
  • 29
    • 0030969791 scopus 로고    scopus 로고
    • Confirmation of quantitative trait loci for ethanol sensitivity in long-sleep and short-sleep mice
    • 1:CAS:528:DyaK2sXhtlensLk%3D 9049627 10.1101/gr.7.2.92
    • Markel PD, Bennett B, Beeson M, Gordon L, Johnson TE (1997) Confirmation of quantitative trait loci for ethanol sensitivity in long-sleep and short-sleep mice. Genome Res 7:92-99
    • (1997) Genome Res , vol.7 , pp. 92-99
    • Markel, P.D.1    Bennett, B.2    Beeson, M.3    Gordon, L.4    Johnson, T.E.5
  • 30
    • 0001536107 scopus 로고
    • Selective breeding for ethanol sensitivity: Short-sleep and long-sleep mice
    • G.E. McClearn R.A. Deitrich V.G. Erwin (eds) U.S. Government Printing Office Washington, DC DHHS Publication (ADM) 81-113
    • McClearn GE, Kakihana R (1981) Selective breeding for ethanol sensitivity: short-sleep and long-sleep mice. In: McClearn GE, Deitrich RA, Erwin VG (eds) Development of animal models as pharmacogenetic tools. U.S. Government Printing Office, Washington, DC, pp 147-159 DHHS Publication No. (ADM) 81-113
    • (1981) Development of Animal Models As Pharmacogenetic Tools , pp. 147-159
    • McClearn, G.E.1    Kakihana, R.2
  • 31
    • 0000757835 scopus 로고
    • Amylase in isolated liver cells
    • 1:CAS:528:DyaF3cXhtFWjt74%3D
    • McGeachin RL, Potter BA (1960) Amylase in isolated liver cells. J Biol Chem 235:1354-1358
    • (1960) J Biol Chem , vol.235 , pp. 1354-1358
    • McGeachin, R.L.1    Potter, B.A.2
  • 35
    • 0032860652 scopus 로고    scopus 로고
    • Molecular pathology of Crigler-Najjar type i and II and Gilbert's Syndrome
    • 1:CAS:528:DC%2BD3cXlslSrsA%3D%3D 10091414
    • Sampietro M, Iolascon A (1999) Molecular pathology of Crigler-Najjar type I and II and Gilbert's Syndrome. Haematologica 84(2):150-157
    • (1999) Haematologica , vol.84 , Issue.2 , pp. 150-157
    • Sampietro, M.1    Iolascon, A.2
  • 36
    • 0023712209 scopus 로고
    • Glucocorticoid and developmental regulation of amylase mRNAs in mouse liver cells
    • 1:CAS:528:DyaL1cXls1Crs7Y%3D 365444 2464743
    • Samuelson LC, Keller PR, Darlington GJ, Meisler MH (1988a) Glucocorticoid and developmental regulation of amylase mRNAs in mouse liver cells. Mol Cell Biol 8:3857-3863
    • (1988) Mol Cell Biol , vol.8 , pp. 3857-3863
    • Samuelson, L.C.1    Keller, P.R.2    Darlington, G.J.3    Meisler, M.H.4
  • 37
    • 0023808786 scopus 로고
    • Expression of the human amylase genes: Recent origin of a salivary amylase promoter from an actin pseudogene
    • 1:CAS:528:DyaL1cXlvVCks7c%3D 338557 2458567 10.1093/nar/16.17.8261
    • Samuelson LC, Wiebauer K, Gumuci DL, Meisler MH (1988b) Expression of the human amylase genes: recent origin of a salivary amylase promoter from an actin pseudogene. Nucleic Acids Res 16:8261-8275
    • (1988) Nucleic Acids Res , vol.16 , pp. 8261-8275
    • Samuelson, L.C.1    Wiebauer, K.2    Gumuci, D.L.3    Meisler, M.H.4
  • 38
    • 0025282303 scopus 로고
    • Retroviral and pseudogene insertion sites reveal the lineage of human salivary and pancreatic amylase genes from a single gene during primate evolution
    • 1:CAS:528:DyaK3cXkvFantrs%3D 360608 1692956
    • Samuelson LC, Biebauer K, Snow CM, Meisler MH (1990) Retroviral and pseudogene insertion sites reveal the lineage of human salivary and pancreatic amylase genes from a single gene during primate evolution. Mol Cell Biol 10:2513-2520
    • (1990) Mol Cell Biol , vol.10 , pp. 2513-2520
    • Samuelson, L.C.1    Biebauer, K.2    Snow, C.M.3    Meisler, M.H.4
  • 39
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from next-generation sequencing data
    • 2938201 20601685 10.1093/nar/gkq603
    • Wang K, Li M, Hakonarson H (2010) ANNOVAR: functional annotation of genetic variants from next-generation sequencing data. Nucleic Acids Res 38:e164
    • (2010) Nucleic Acids Res , vol.38 , pp. 164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 40
    • 38049055222 scopus 로고    scopus 로고
    • Genomic copy number and expression variation within the C57BL/6J inbred mouse strain
    • 1:CAS:528:DC%2BD1cXnvFyr 2134784 18032724 10.1101/gr.6927808
    • Watkins-chow DE, Pavan WJ (2008) Genomic copy number and expression variation within the C57BL/6J inbred mouse strain. Genome Res 18(1):60-66
    • (2008) Genome Res , vol.18 , Issue.1 , pp. 60-66
    • Watkins-Chow, D.E.1    Pavan, W.J.2
  • 41
    • 84872506987 scopus 로고    scopus 로고
    • Phenotypic impact of genomic structural variation: Insights from and for human disease
    • 1:CAS:528:DC%2BC3sXptlOgsw%3D%3D 23329113 10.1038/nrg3373
    • Weischenfeldt J, Symmons O, Spitz F, Korbel JO (2013) Phenotypic impact of genomic structural variation: insights from and for human disease. Nat Rev Genet 14:125-138
    • (2013) Nat Rev Genet , vol.14 , pp. 125-138
    • Weischenfeldt, J.1    Symmons, O.2    Spitz, F.3    Korbel, J.O.4
  • 42
    • 64349089985 scopus 로고    scopus 로고
    • Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins
    • 1:CAS:528:DC%2BD1MXktVKgtro%3D 2829300 19349973 10.1038/nbt.1532
    • Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD (2009) Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat Biotechnol 27(4):378-386
    • (2009) Nat Biotechnol , vol.27 , Issue.4 , pp. 378-386
    • Wollscheid, B.1    Bausch-Fluck, D.2    Henderson, C.3    O'Brien, R.4    Bibel, M.5    Schiess, R.6    Aebersold, R.7    Watts, J.D.8
  • 43
    • 0034967563 scopus 로고    scopus 로고
    • Comparison of global brain gene expression profiles between inbred long-sleep and inbred short-sleep mice by high-density gene array hybridization
    • 1:CAS:528:DC%2BD3MXltFemsLo%3D 11410715 10.1111/j.1530-0277.2001.tb02284. x
    • Xu Y, Ehringer M, Yang F, Sikela JM (2001) Comparison of global brain gene expression profiles between inbred long-sleep and inbred short-sleep mice by high-density gene array hybridization. Alcohol Clin Exp Res 25:810-818
    • (2001) Alcohol Clin Exp Res , vol.25 , pp. 810-818
    • Xu, Y.1    Ehringer, M.2    Yang, F.3    Sikela, J.M.4
  • 44
    • 0025025819 scopus 로고
    • Cloning and characterization of a third type of human α-amylase gene, AMY2B
    • 1:CAS:528:DyaK3MXhtlOjs70%3D 2401405 10.1016/0378-1119(90)90191-S
    • Yokouchi H, Horii A, Emi M, Tomita N, Doi S, Ogawa M, Mori T, Matsubara K (1990) Cloning and characterization of a third type of human α-amylase gene, AMY2B. Gene 90:281-286
    • (1990) Gene , vol.90 , pp. 281-286
    • Yokouchi, H.1    Horii, A.2    Emi, M.3    Tomita, N.4    Doi, S.5    Ogawa, M.6    Mori, T.7    Matsubara, K.8
  • 45
    • 66449096802 scopus 로고    scopus 로고
    • Identification of MUP1 as a regulator for glucose and lipid metabolism in mice
    • 1:CAS:528:DC%2BD1MXkslamtLs%3D 2670120 19258313 10.1074/jbc.M900754200
    • Zhou Y, Jiang L, Rui L (2009) Identification of MUP1 as a regulator for glucose and lipid metabolism in mice. J Biol Chem 284(17):11152-11159
    • (2009) J Biol Chem , vol.284 , Issue.17 , pp. 11152-11159
    • Zhou, Y.1    Jiang, L.2    Rui, L.3


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