Isolation and characterization of siderophore producing antagonistic rhizobacteria against Rhizoctonia solani

Journal of Basic Microbiology

Volumn 54, Issue 6, 2014, Pages 585-597

  Solanki, Manoj Kumar ^a   Singh, Rajesh Kumar ^a   Srivastava, Supriya ^a   Kumar, Sudheer ^a   Kashyap, Prem Lal ^a   Srivastava, Alok K ^a   Arora, Dilip K ^a  

^a ICAR NATIONAL BUREAU OF AGRICULTURALLY IMPORTANT MICROORGANISMS   (India)

Author keywords

Antagonism; Bio inoculants; Pseudomonas fluorescens; Siderophore

Indexed keywords

ALCALIGENES; ALCALIGENES SP.; BACTERIA (MICROORGANISMS); ENTEROBACTER; ENTEROBACTER SP.; LYCOPERSICON ESCULENTUM; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS SP.; RHIZOBIALES; THANATEPHORUS CUCUMERIS;

BACTERIAL DNA; RIBOSOME DNA; RNA 16S; SIDEROPHORE;

ANTIBIOSIS; BACTERIA; BACTERIUM IDENTIFICATION; BIOLOGICAL PEST CONTROL; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PH; PHYLOGENY; PLANT DISEASE; PREVENTION AND CONTROL; RHIZOCTONIA; RHIZOSPHERE; TOMATO;

ANTIBIOSIS; BACTERIA; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; HYDROGEN-ION CONCENTRATION; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PEST CONTROL, BIOLOGICAL; PHYLOGENY; PLANT DISEASES; RHIZOCTONIA; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SIDEROPHORES; SOIL MICROBIOLOGY;

EID: 84901849335     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.201200564     Document Type: Article

References (50)

1. NBH, 2010. Indian horticulture database, National Board of Horticulture, India.
2. Arora, N.K., Khare, E., Oh, H., Kang, S.C. et al., 2008. Diverse mechanisms adopted by fluorescent Pseudomonas PGC2 during the inhibition of Rhizoctonia solani and Phytophthora capsici. World J. Microbiol. Biot., 24, 581-585.
3. Solanki, M.K., Kumar, S., Pandey, A.K., Srivastava, S. et al., 2012. Diversity and antagonistic potential of Bacillus spp. associated to the rhizosphere of tomato for the management of Rhizoctonia solani. Biocontrol Sci. Technol., 22, 203-217.
4. Solanki, M.K., Singh, N., Singh, R.K., Singh, P. et al., 2011. Plant defense activation and management of tomato root rot by a chitin-fortified Trichoderma/Hypocrea formulation. Phytoparasitica, 39, 471-481.
5. Zachow, C., Grosch, R., Berg, G., 2011. Impact of biotic and a-biotic parameters on structure and function of microbial communities living on sclerotia of the soil-borne pathogenic fungus Rhizoctonia solani. Appl. Soil Ecol., 48, 193-200.
6. Ahemad, M., Khan, M.S., 2011. Toxicological effects of selective herbicides on plant growth promoting activities of phosphate solubilizing Klebsiella sp. strain PS19. Curr. Microbiol., 62, 532-538.
7. Sayyed, R.Z., Chincholkar, S.B., 2009. Siderophore-producing Alcaligenes feacalis exhibited more biocontrol potential vis-à-vis chemical fungicide. Curr. Microbiol., 58, 47-51.
8. Haas, D., Défago, G., 2005. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat. Rev. Microbiol., 3, 307-319.
9. Singh, B.K., Dawson, L.A., Macdonald, C.A., Buckland, S.M., 2009. Impact of biotic and abiotic interaction on soil microbial communities and functions: a field study. Appl. Soil Ecol., 41, 239-248.
10. Sayyed, R.Z., Patel D.C., Patel, P.R., 2007. Plant growth promoting potential of P solubilizing Pseudomonas sp. occuring in acidic soil of Jalgaon. Asian J. Microbiol. Biotechnol. Environ. Sci., 4, 925-928.
11. Yu, X., Ai, C., Xin, L., Zhou, G., 2010. The siderophore-producing bacterium, Bacillus subtilis CAS15, has a biocontrol effect on Fusarium wilt and promotes the growth of pepper. Eur. J. Soil Biol., 47, 138-145.
12. Weller, D.V., 2007. Pseudomonas biocontrol agents of soilborne pathogens: looking back over 30 years. Phytopathology, 97, 250-256.
13. Peralta, K.D., Araya, T., Valenzuela, S., Sossa, K. et al., 2012. Production of phytohormones, siderophores and population fluctuation of two root-promoting rhizobacteria in Eucalyptus globulus cuttings. World J. Microbiol. Biotechnol., 28, 2003-2014.
14. Costa, J.M., Loper, J.E., 1994. Characterization of siderophore production by the biological control agent Enterobacter cloacae. Mol. Plant-Microbe Interact., 7, 440-448.
15. Lemanceau, P., Albouvette, A., 1993. Suppression of Fusarium wilts by fluorescent pseudomonas: mechanism and applications. Biocontrol Sci. Technol., 3, 219-234.
16. Pieterse, C.M.J., van Pelt, J.A., van Wees, S.C.M., Ton, J. et al., 2001. Rhizobacteria mediated induced systemic resistance: triggering, signaling and expression. Eur. J. Plant Pathol., 107, 51-61.
17. Mazzola, M., 2002. Mechanism of natural soil suppressiveness to soil borne diseases. Antonie Van Leeuwenhoek, 81, 557-564.
18. Blumer, C., Haas, D., 2000. Mechanism, regulation, and ecological role of bacterial cyanide biosynthesis. Arch. Microbiol., 173, 170-177.
19. Vidhyasekaran, P., Muthamilan, M., 1999. Development of formulations of Pseudomonas fluorescens for control of chickpea for control of wilt. Plant Dis., 79, 782-786.
20. Rabindran, R., Vidhyasekaran, P., 1996. Development of a formulation of Pseudomonas fluorescens PfALR2 for management of rice sheath blight. Crop Prot., 15, 715-721.
21. Alexander, D.B., Zuberer, D.A., 1991. Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria. Biol. Fertil. Soils, 2, 39-45.
22. Schwyn, B., Neilands, J.B., 1987. Universal chemical assay for the detection and determination of siderophores. Ann. Biochem., 160, 47-56.
23. Monreal, J., Reese, E., 1969. The chitinase of Serratia marcescens. Can. J. Microbiol., 15, 689.
24. Pan, S.Q., Ye, X.S., Kuc, J., 1991. Association of β-1, 3-glucanase activity and isoform pattern with systemic resistance to blue mold in tobacco induced by stem injection with or leaf inoculation with tobacco mosaic virus. Physiol. Mol. Plant Pathol., 39, 25-39.
25. Lowry, O., Rosebrough, N., Farr, A., Randall, R., 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem., 139, 265-275.
26. Bric, J.M., Bostock, R.M., Silverstone, S.E., 1991. Rapid in situ assay for indole acetic acid production by bacteria immobilized on a nitrocellulose membrane. Appl. Environ. Microbiol., 57, 535-538.
27. Husen, E., 2003. Screening of soil bacteria for plant growth promotion activities in vitro. Indian J. Agric. Sci., 4, 27-31.
28. Cappuccino, J.C., Sherman N., 1992. Biochemical activities of microorganisms. In: Microbiology, A Laboratory Manual, 3rd edn. Benjamin / Cummings Pub. Co., California, USA pp. 125-179.
29. Lorck, H., 1948. Production of hydrocyanic acid by bacteria. Physiol. Plant, 1, 142-146.
30. Holt, J.G., Krieg, N.R., Sneath, P.H.A., Staley, J.T. et al., 1994. Gram-negative aerobic/microaerophilic rods and cocci subgroup 4A Genus Pseudomonas, in: Holt, J.G. (Ed.), Bergey's Manual of Determinative Bacteriology, 9th ed., Williams & Wilkins Baltimore, Maryland, USA, pp. 93-94.
31. Solanki, M.K., Robert, A.S., Singh, R.K., Kumar, S. et al., 2012. Characterization of mycolytic enzymes of Bacillus strains and their bio-protection role against Rhizoctonia solani in tomato. Curr. Microbiol., 65, 330-336.
32. Hoagland, D.R., Arnon, D.I., 1950. The water culture method for growing plants without soil. Calif. Agric. Exp. Sta. Circ., 347, 1-32.
33. Ferjani, A., Mustardy, L., Sulpice, R., Marin, K. et al., 2003. Glucosyl glycerol, a compatible solute, sustains cell division under salt stress. Plant Physiol., 131, 1628-1637.
34. Katyal, J.C., Sharma, B.D., 1980. A new technique of plant analysis to resolve iron chlorosis. Plant Soil, 55, 105-119.
35. Neilands, J.B., Leong, J., 1986. Siderophores in relation to plant growth and disease. Ann. Rev. Phytopathol., 37, 187-208.
36. Snow, G.A., 1954. Mycobactin, a growth factor for Mycobacterium johnei. II. Degradation and identification of fragments. J. Chem. Soc., 2588-2596.
37. Arnow, L.E., 1937. Colorimetric determination of the components of 3, 4-dihydroxyphenylalanine tyrosine mixtures. J. Biol. Chem., 118, 531.
38. Shenker, M., Oliver, I., Helmann, M., Hadar, Y. et al., 1992. Utilization by tomatoes of iron mediated by a siderophore produced by Rhizopus arrhizus. J. Plant Nutr., 15, 2173-2182.
39. Atiyeh, R.M., Arancon, N.Q., Edwards, C.A., Metzger, J.D., 2000. Influence of earthworm-processed pig manure on the growth and yield of greenhouse tomatoes. Bioresour. Technol., 75, 175-180.
40. Saharan, B.S., Nehra, V., 2011. Plant growth promoting rhizobacteria: a critical review. Life Sci. Med. Res., 21, 1-30.
41. Manwar, A.V., Vaiganker, P.D., Bhonge, L.S., Chincholkar, S.B., 2000. In vitro suppression of plant pathogens by siderophores of fluorescent pseudomonads. Ind. J. Microbiol., 40, 109-112.
42. Loper, J.E., Henkels, M.D., 1997. Availability of iron to Pseudomonas fluorescence in rhizosphere and bulk soil evaluated with an ice nucleation reporter gene. Appl. Environ. Microbiol., 63, 99-105.
43. Nielsen, M.N., Sorensen, J., Fels, J., Pedersen, H.C., 1998. Secondary metabolite- and endochitinase-dependent antagonism toward plant-pathogenic microfungi of Pseudomonas fluorescens isolates from sugar beet rhizosphere. Appl. Environ. Microbiol., 64, 3563-3569.
44. Nagrajkumar, M., Bhaskaran, R., Velazhahan, R., 2004. Involvement of secondary metabolites and extracellular lytic enzymes produced by Pseudomonas fluorescens in inhibition of Rhizoctonia solani, the rice sheath of blight pathogen. Microbiol. Res., 159, 73-81.
45. Bhatia, S., Maheshwari, D.K., Dubey, R.C., Arora D.S., et al., 2008. Beneficial effects of fluorescent Pseudomonads on seed germination, growth promotion, and suppression of charcoal rot in groundnut (Arachis hypogea L.). J. Microbiol. Biotechnol., 18, 1578-1583.
46. Tripathi, M., Johri, B.N., 2002. In-vitro antagonistic potential of fluorescent Pseudomonads and control of sheath blight of maize caused by Rhizoctonia solani. Indian J. Microbiol., 42, 207-214.
47. Karnwal, A., 2011. Mycolytic effect of fluorescent Pseudomonas in biocontrolling of fungal phytopathogenic Curvularia lunata, Fusarium oxysporum, Alternaria padwickii and Rhizoctonia solani. Arch. Phytopathol. Plant Protec., 44, 1128-1134.
48. Singh, S.K., Nene, Y.L., Reddy, M.V., 2003. Influence of crop system on Macrophomina phaseolina populations in soil. Plant Dis., 74, 812-814.
49. Jurkevitch, E., Hadar, Y., Chen, Y., 1986. Remedy of lime-induced chlorosis in peanuts by Pseudomonas sp. siderophores. J. Plant Nutr., 9, 535-545.
50. Mercado-Blanco, J., Bakker P.A.H.M., 2007. Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection. Antonie Van Leeuwenhoek, 92, 367-389.