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1
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20544435588
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Infrared spectroscopic imaging forhistopathologic recognition
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Fernandez, D. C., Bhargava, R., Hewitt, S. M., Levin, I. W., "Infrared spectroscopic imaging forhistopathologic recognition," Nature Biotechnology, 23(4), 469-474 (2005).
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Fernandez, D.C.1
Bhargava, R.2
Hewitt, S.M.3
Levin, I.W.4
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2
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0141738579
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Applications of Fourier transforminfrared microspectroscopy in studies of benign prostate and prostate cancer
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A pilot study
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Gazi, E., Dwyer, J., Gardner, P., Ghanbari-Siahkali, A., Wade, A. P., Miyan, J., Lockyer, N. P., Vickerman, J.C., Clarke, N. W., Shanks, J. H., Scott, L. J., Hart, C. A., Brown, M., "Applications of Fourier transforminfrared microspectroscopy in studies of benign prostate and prostate cancer. A pilot study," Journal ofPathology, 201(1), 99-108 (2003).
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Gazi, E.1
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Ghanbari-Siahkali, A.4
Wade, A.P.5
Miyan, J.6
Lockyer, N.P.7
Vickerman, J.C.8
Clarke, N.W.9
Shanks, J.H.10
Scott, L.J.11
Hart, C.A.12
Brown, M.13
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3
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33748286685
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A correlation of FTIR spectra derived from prostate cancer biopsies with Gleason gradeand tumour stage
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Gazi, E., Baker, M., Dwyer, J., Lockyer, N. P., Gardner, P., Shanks, J. H., Reeve, R. S., Hart, C. A., Clarke, N.W., Brown, M. D., "A correlation of FTIR spectra derived from prostate cancer biopsies with Gleason gradeand tumour stage," European Urology, 50(4), 750-761 (2006).
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Gazi, E.1
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Gardner, P.5
Shanks, J.H.6
Reeve, R.S.7
Hart, C.A.8
Clarke, N.W.9
Brown, M.D.10
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4
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61349191141
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Investigating FTIR basedhistopathology for the diagnosis of prostate cancer
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Baker, M. J., Gazi, E., Brown, M. D., Shanks, J. H., Clarke, N. W., Gardner, P., "Investigating FTIR basedhistopathology for the diagnosis of prostate cancer," Journal of Biophotonics, 2(1-2), 104-113 (2009).
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Journal of Biophotonics
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Baker, M.J.1
Gazi, E.2
Brown, M.D.3
Shanks, J.H.4
Clarke, N.W.5
Gardner, P.6
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5
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70349303076
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Resonant Mie scattering in infraredspectroscopy of biological materials-understanding the 'dispersion artefact'
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Bassan, P., Byrne, H. J., Bonnier, F., Lee, J., Dumas, P., Gardner, P., "Resonant Mie scattering in infraredspectroscopy of biological materials-understanding the 'dispersion artefact'," Analyst, 134(8), 1586-1593(2009).
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Analyst
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Bassan, P.1
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Bonnier, F.3
Lee, J.4
Dumas, P.5
Gardner, P.6
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6
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76749118117
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Resonant Mie Scattering (RMieS) correction of infrared spectra from highly scattering biological samples
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Bassan, P., Kohler, A., Martens, H., Lee, J., Byrne, H. J., Dumas, P., Gazi, E., Brown, M., Clarke, N., Gardner,P., "Resonant Mie Scattering (RMieS) correction of infrared spectra from highly scattering biological samples,"Analyst, 135(2), 268-277 (2010).
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Analyst
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Bassan, P.1
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Lee, J.4
Byrne, H.J.5
Dumas, P.6
Gazi, E.7
Brown, M.8
Clarke, N.9
Gardner, P.10
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7
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84863405492
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FTIR microscopy of biological cells and tissue: Data analysis using resonant Miescattering (RMieS) EMSC algorithm
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Bassan, P., Sachdeva, A., Kohler, A., Hughes, C., Henderson, A., Boyle, J., Shanks, J. H., Brown, M., Clarke,N. W., Gardner, P., "FTIR microscopy of biological cells and tissue: data analysis using resonant Miescattering (RMieS) EMSC algorithm," Analyst, 137(6), 1370-1377 (2012).
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Analyst
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Bassan, P.1
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Hughes, C.4
Henderson, A.5
Boyle, J.6
Shanks, J.H.7
Brown, M.8
Clarke, N.W.9
Gardner, P.10
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8
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77957333773
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RMieS-EMSC correction for infrared spectra of biological cells: Extension using full Mie theoryand GPU computing
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Bassan, P., Kohler, A., Martens, H., Lee, J., Jackson, E., Lockyer, N., Dumas, P., Brown, M., Clarke, N.,Gardner, P., "RMieS-EMSC correction for infrared spectra of biological cells: Extension using full Mie theoryand GPU computing," Journal of Biophotonics, 3(8-9), 609-620 (2010).
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Bassan, P.1
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Lockyer, N.6
Dumas, P.7
Brown, M.8
Clarke, N.9
Gardner, P.10
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9
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67549142845
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Effects ofdigital dewaxing methods on K-means-clusterized IR images collected on formalin-fixed paraffin-embeddedsamples of skin carcinoma
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Sebiskveradze, D., Gobinet, C., Ly, E., Manfait, M., Jeannesson, P., Herbin, M., Piot, O., Vrabie, V., "Effects ofdigital dewaxing methods on K-means-clusterized IR images collected on formalin-fixed paraffin- embeddedsamples of skin carcinoma." BioInformatics and BioEngineering, 8(1-6), (2008)
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Jeannesson, P.5
Herbin, M.6
Piot, O.7
Vrabie, V.8
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10
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38649100972
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Combination of FTIR spectral imagingand chemometrics for tumour detection from paraffin-embedded biopsies
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Ly, E., Piot, O., Wolthuis, R., Durlach, A., Bernard, P., Manfait, M., "Combination of FTIR spectral imagingand chemometrics for tumour detection from paraffin-embedded biopsies," Analyst, 133(2), 197-205 (2008).
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Ly, E.1
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Manfait, M.6
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11
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56449109902
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IR spectral imaging for histopathological characterization of xenografted human coloncarcinomas
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Wolthuis, R., Travo, A., Nicolet, C., Neuville, A., Gaub, M. P., Guenot, D., Ly, E., Manfait, M., Jeannesson, P.,Piott, O., "IR Spectral Imaging for Histopathological Characterization of Xenografted Human ColonCarcinomas," Analytical Chemistry, 80(22), 8461-8469 (2008).
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Wolthuis, R.1
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Guenot, D.6
Ly, E.7
Manfait, M.8
Jeannesson, P.9
Piott, O.10
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12
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41349084170
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Estimating and correcting Mie scattering in synchrotron-basedmicroscopic Fourier transform infrared spectra by extended multiplicative signal correction
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Kohler, A., Sule-Suso, J., Sockalingum, G. D., Tobin, M., Bahrami, F., Yang, Y., Pijanka, J., Dumas, P., Cotte,M., van Pittius, D. G., Parkes, G., Martens, H., "Estimating and correcting Mie scattering in synchrotron-basedmicroscopic Fourier transform infrared spectra by extended multiplicative signal correction," AppliedSpectroscopy, 62(3), 259-266 (2008).
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Kohler, A.1
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Yang, Y.6
Pijanka, J.7
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Cotte, M.9
Van Pittius, D.G.10
Parkes, G.11
Martens, H.12
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13
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84874829550
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Theinherent problem of transflection-mode infrared spectroscopic microscopy and the ramifications for biomedicalsingle point and imaging applications
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Bassan, P., Lee, J., Sachdeva, A., Pissardini, J., Dorling, K. M., Fletcher, J. S., Henderson, A., Gardner, P., "Theinherent problem of transflection-mode infrared spectroscopic microscopy and the ramifications for biomedicalsingle point and imaging applications," Analyst, 138(1), 144-157 (2013).
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Bassan, P.1
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14
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Random forests
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Breiman, L., "Random forests," Machine Learning, 45(1), 5-32 (2001).
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Machine Learning
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Chang, C.C.1
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Transmission FTIR chemicalimaging on glass substrates: Applications in infrared spectral histopathology
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accepted
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Bassan, P., Mellor, J., Shapiro, J., Williams, K. J., Lisanti, M., Gardner, P., "Transmission FTIR chemicalimaging on glass substrates: applications in infrared spectral histopathology," Analytical Chemistry, (2014)(accepted).
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(2014)
Analytical Chemistry
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Bassan, P.1
Mellor, J.2
Shapiro, J.3
Williams, K.J.4
Lisanti, M.5
Gardner, P.6
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17
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33747438383
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High throughput assessment of cells and tissues:Bayesian classification of spectral metrics from infrared vibrational spectroscopic imaging data
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Bhargava, R., Fernandez, D. C., Hewitt, S. M., Levin, I. W., "High throughput assessment of cells and tissues:Bayesian classification of spectral metrics from infrared vibrational spectroscopic imaging data," Biochimica EtBiophysica Acta-Biomembranes, 1758(7), 830-845 (2006).
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