Inference of S-system models of genetic networks using a genetic local search

2003 Congress on Evolutionary Computation, CEC 2003 - Proceedings

Volumn 1, Issue , 2003, Pages 631-638

  Kimura, Shuhei ^a   Hatakeyama, Mariko ^a   Konagaya, Akihiko ^a  

^a RIIiEN Genomic Sciences Center   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EVOLUTIONARY ALGORITHMS;

GENETIC LOCAL SEARCH; GENETIC NETWORKS; LOCAL SEARCH METHOD; S-SYSTEM MODELS; SEARCH OPERATORS; SUB-PROBLEMS;

COMPUTER SCIENCE;

EID: 84901697990     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CEC.2003.1299635     Document Type: Conference Paper

References (15)

1. Akutsu, T., Mivano, S. and Kuhara, S. (2000) "Algorithms for Inferring Qualitative Models of Biological Networks." Proc. of Pacific Symposium on Biocomputing, 5, pp. 290-301.
2. Chen, T., He, H. L. and Church. G. M. (1999) "Modeling Gene Expression with Differential Equations." Proc, of PSB, 4. pp. 29-40.
3. Cleveland. W. S. (1979) "Robust Locally Weight Regression and Smoothing Scatterplots." J. of American Statistical Association, Vol. 79. No. 368. pp. 829-836.
4. De Risi, J. L., Iyer. V. R. and Brown, P. O. (1997) "'Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale", Science. Vol. 278. pp. 680-686.
5. Kimura. S., Ono. I., Kita, H. and Kobayashi. S. (2000) "An Extension of UNDX based on Guidelines for-Designing Crossover Operators: Proposition and Evaluation of ENDX." Trans, of the Society of Instrument and Control Engineers. Vol. 36. No. 12, pp. 1162-1171 (in Japanese).
6. Kimura, S. and Konagava, A, (2003) "High Dimensional Function Optimization using a new Genetic Local Search suitable for Parallel Computers." Proc. of 2003 IEEE Conference on Systems, Man & Cybernetics (to appear).
7. Malci. Y., Tominaga,. D., Okamoto, M., Watanabe, S. and Eguchi, Y. (2001) "Development of a System for the Inference of Large Scale Genetic Networks." Proc. of PSB, 6, pp. 446-458.
8. Maki, Y., Ueda. T., Okamoto, M., Uematsu, N., Iriamura, Y. and Eguchi, Y. (2002) "Inference of Genetic Network Using the Expression Profile Time Course Data of Mouse P19 Ceils", Genome Informatics, Vol. 13, pp., 382-383.
9. Ono, I. and Kobayashi, S. (1997) "A Real-coded Genetic Algorithm for Function Optimization Using Unimodal Normal Distribution Crossover", Proc. of 7th ICG A, pp. 246-253.
10. Press, W., Teukolsky. S., Vetterling. W. and Flannery, B. (1995) "Numerical Recipes in C second edition", Cambridge University Press.
11. Sakamoto, E. and Iba, H. (2001) "Inferring a System of Differential Equations for a Gene Regulatory Network by using Genetic Programming", CEC 2001. pp. 720-726.
12. Satoh, H., Yamamura, M. and Kobayashi, S, (1997) "Minimal Generation Gap Model for GAs Considering Both Exploration and. Exploitation. " Proc. of Int. Conf. on Fuzzy Logic. Neural Networks and Soft Computing, pp. 494-497.
13. Thieffry. D., Huerta, A. M., Rueda, E. P. and - Yides. J. C. (1998) "From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli." BioEssavs, Vol. 20. pp. 433-440.
14. Tominaga, D., Koga. N. and Okamoto, M. (2000) "Efficient Numerical Optimization Algorithm Based on Genetic Algorithm for Inverse Problem." GECCO 2000. pp. 251-258.
15. Ueda, T., Ono, I. and Okamoto, M. (2002) "Development of System Identification Technique Based on Real-Coded Genetic Algorithm." Genome Informatics, Vol. 13, pp. 386-387.