Unsupervised classification of neocortical activity patterns in neonatal and pre-juvenile rodents

Frontiers in Neural Circuits

Volumn 8, Issue MAY, 2014, Pages

  Cichon, Nicole B ^a   Denker, Michael ^b   Grün, Sonja ^b,c,d   Hanganu Opatz, Ileana L ^a  

^a UNIVERSITY MEDICAL CENTER HAMBURG EPPENDORF   (Germany)

^b FORSCHUNGSZENTRUM JÜLICH   (Germany)

^c RWTH AACHEN UNIVERSITY   (Germany)

^d RIKEN BRAIN SCIENCE INSTITUTE   (Japan)

Author keywords

Development; High frequency oscillations; Network oscillations; Prefrontal cortex; Principal component analysis; Synchrony

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BRAIN DEVELOPMENT; BRAIN FUNCTION; BRAIN REGION; CLASSIFICATION ALGORITHM; CONTROLLED STUDY; DEVELOPMENTAL STAGE; ELECTROENCEPHALOGRAM; FREQUENCY MODULATION; FUNCTIONAL ASSESSMENT; HIGH FREQUENCY OSCILLATION; MALE; NERVE CELL NETWORK; NERVOUS SYSTEM PARAMETERS; NESTED GAMMA SPINDLE BURST; NEWBORN; NONHUMAN; OSCILLATION; OSCILLATORY POTENTIAL; RAT; RELIABILITY; SPINDLE BURST; STRIATE CORTEX; ACTION POTENTIAL; ALGORITHM; ANIMAL; DEVELOPMENT; GROWTH, DEVELOPMENT AND AGING; HIGH-FREQUENCY OSCILLATIONS; NEOCORTEX; NERVE CELL; NETWORK OSCILLATIONS; PHYSIOLOGY; PREFRONTAL CORTEX; PRINCIPAL COMPONENT ANALYSIS; SYNCHRONISM; WISTAR RAT;

DEVELOPMENT; HIGH-FREQUENCY OSCILLATIONS; NETWORK OSCILLATIONS; PREFRONTAL CORTEX; PRINCIPAL COMPONENT ANALYSIS; SYNCHRONY;

ACTION POTENTIALS; ALGORITHMS; ANIMALS; ANIMALS, NEWBORN; NEOCORTEX; NERVE NET; NEURONS; RATS; RATS, WISTAR;

EID: 84901632821     PISSN: 16625110     EISSN: None     Source Type: Journal    
DOI: 10.3389/fncir.2014.00050     Document Type: Article

References (43)

1. Abonyi, J., and Feil, B. (2007). Cluster Analysis for Data Mining and System Identification. Berlin: Birkhäuser.
2. Adelsberger, H., Garaschuk, O., and Konnerth, A. (2005). Cortical calcium waves in resting newborn mice. Nat. Neurosci. 8, 988-990. doi: 10.1038/nn1502
3. Anderson, C. M., Torres, F., and Faoro, A. (1985). The EEG of the early premature. Electroencephalogr. Clin. Neurophysiol. 60, 95-105. doi: 10.1016/0013-4694(85)90015-X
4. Babuska, R., van der Veen, P. J., and Kaymak, U. (2002). "Improved covariance estimation for Gustafson-Kessel clustering, " in WCCI 2002. The IEEE World Congress on Computational Intelligence (Piscataway, NJ: IEEE), 1081-1085.
5. Brockmann, M. D., Pöschel, B., Cichon, N., and Hanganu-Opatz, I. L. (2011). Coupled oscillations mediate directed interactions between prefrontal cortex and hippocampus of the neonatal rat. Neuron 71, 332-347. doi: 10.1016/j.neuron.2011.05.041
6. Buzsaki, G., and Draguhn, A. (2004). Neuronal oscillations in cortical networks. Science 304, 1926-1929. doi: 10.1126/science.1099745
7. Buzsáki, G., and Wang, X.-J. (2012). Mechanisms of gamma oscillations. Annu. Rev. Neurosci. 35, 203-225. doi: 10.1146/annurev-neuro-062111-150444
8. Changeux, J. P., and Danchin, A. (1976). Selective stabilisation of developing synapses as a mechanism for the specification of neuronal networks. Nature 264, 705-712. doi: 10.1038/264705a0
9. Chipaux, M., Colonnese, M. T., Mauguen, A., Fellous, L., Mokhtari, M., Lezcano, O., et al. (2013). Auditory stimuli mimicking ambient sounds drive temporal "delta-brushes" in premature infants. PLoS ONE 8:e79028. doi: 10.1371/journal.pone.0079028
10. Clement, E. A., Richard, A., Thwaites, M., Ailon, J., Peters, S., and Dickson, C. T. (2008). Cyclic and sleep-like spontaneous alternations of brain state under urethane anaesthesia. PLoS ONE 3:e2004. doi: 10.1371/journal.pone.0002004
11. Colonnese, M. T., Kaminska, A., Minlebaev, M., Milh, M., Bloem, B., Lescure, S., et al. (2010). A conserved switch in sensory processing prepares developing neocortex for vision. Neuron 67, 480-498. doi: 10.1016/j.neuron.2010.07.015
12. de Almeida, J., Jourdan, I., Murer, M. G., and Belforte, J. E. (2013). Refinement of neuronal synchronization with gamma oscillations in the medial prefrontal cortex after adolescence. PLoS ONE 8:e62978. doi: 10.1371/journal.pone.0062978
13. Delorme, A., and Makeig, S. (2004). EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis. J. Neurosci. Methods 134, 9-21. doi: 10.1016/j.jneumeth.2003.10.009
14. Dupont, E., Hanganu, I. L., Kilb, W., Hirsch, S., and Luhmann, H. J. (2006). Rapid developmental switch in the mechanisms driving early cortical columnar networks. Nature 439, 79-83. doi: 10.1038/nature04264
15. Engel, A. K., and Fries, P. (2010). Beta-band oscillations-signalling the status quo? Curr. Opin. Neurobiol. 20, 156-165. doi: 10.1016/j.conb.2010.02.015
16. Fries, P., Nikoliæ, D., and Singer, W. (2007). The gamma cycle. Trends Neurosci. 30, 309-316. doi: 10.1016/j.tins.2007.05.005
17. Hanganu, I. L., Ben-Ari, Y., and Khazipov, R. (2006). Retinal waves trigger spindle bursts in the neonatal rat visual cortex. J. Neurosci. 26, 6728-6736. doi: 10.1523/JNEUROSCI.0752-06.2006
18. Hanganu, I. L., Staiger, J. F., Ben-Ari, Y., and Khazipov, R. (2007). Cholinergic modulation of spindle bursts in the neonatal rat visual cortex in vivo. J. Neurosci. 27, 5694-5705. doi: 10.1523/JNEUROSCI.5233-06.2007
19. Hanganu-Opatz, I. L. (2010). Between molecules and experience: role of early patterns of coordinated activity for the development of cortical maps and sensory abilities. Brain Res. Rev. 64, 160-176. doi: 10.1016/j.brainresrev.2010.03.005
20. Huberman, A. D., Speer, C. M., and Chapman, B. (2006). Spontaneous retinal activity mediates development of ocular dominance columns and binocular receptive fields in v1. Neuron 52, 247-254. doi: 10.1016/j.neuron.2006.07.028
21. Jackson, J., Goutagny, R., and Williams, S. (2011). Fast and slow gamma rhythms are intrinsically and independently generated in the subiculum. J. Neurosci. 31, 12104-12117. doi: 10.1523/JNEUROSCI.1370-11.2011
22. Jerbi, K., Lachaux, J.-P., N'Diaye, K., Pantazis, D., Leahy, R. M., Garnero, L., et al. (2007). Coherent neural representation of hand speed in humans revealed by MEG imaging. Proc. Natl. Acad. Sci. U.S.A. 104, 7676-7681. doi: 10.1073/pnas.0609632104
23. Khazipov, R., Sirota, A., Leinekugel, X., Holmes, G. L., Ben-Ari, Y., and Buzsáki, G. (2004). Early motor activity drives spindle bursts in the developing somatosensory cortex. Nature 432, 758-761. doi: 10.1038/nature03132
24. Kostovic, I., and Judas, M. (2002). Correlation between the sequential ingrowth of afferents and transient patterns of cortical lamination in preterm infants. Anat. Rec. 267, 1-6. doi: 10.1002/ar.10069
25. Krüger, H.-S., Brockmann, M. D., Salamon, J., Ittrich, H., and Hanganu-Opatz, I. L. (2012). Neonatal hippocampal lesion alters the functional maturation of the prefrontal cortex and the early cognitive development in pre-juvenile rats. Neurobiol. Learn. Mem. 97, 470-481. doi: 10.1016/j.nlm.2012.04.001
26. Le Van Quyen, V., Foucher, J., Lachaux, J., Rodriguez, E., Lutz, A., Martinerie, J., et al. (2001). Comparison of Hilbert transform and wavelet methods for the analysis of neuronal synchrony. J. Neurosci. Methods 111, 83-98. doi: 10.1016/S0165-0270(01)00372-7
27. Lisman, J. E., and Jensen, O. (2013). The theta-gamma neural code. Neuron 77, 1002-1016. doi: 10.1016/j.neuron.2013.03.007
28. Minlebaev, M., Colonnese, M., Tsintsadze, T., Sirota, A., and Khazipov, R. (2011). Early gamma oscillations synchronize developing thalamus and cortex. Science 334, 226-229. doi: 10.1126/science.1210574
29. Mitra, P. P., and Bokil, H. (2008). Observed Brain Dynamics. Oxford: Oxford University Press.
30. Pazienti, A., and Grün, S. (2006). Robustness of the significance of spike synchrony with respect to sorting errors.J. Comput. Neurosci. 21, 329-342. doi: 10.1007/s10827-006-8899-7
31. Pfurtscheller, G., and Lopes da Silva, F. H. (1999). Event-related EEG/MEG synchronization and desynchronization: basic principles. Clin. Neurophysiol. 110, 1842-1857. doi: 10.1016/S1388-2457(99)00141-8
32. Quinn, B., Toga, A. W., Motamed, S., and Merlic, C. A. (1995). Fluoro nissl green: a novel fluorescent counterstain for neuroanatomy. Neurosci. Lett. 184, 169-172. doi: 10.1016/0304-3940(94)11198-R
33. Ray, S., and Maunsell, J. H. R. (2011). Different origins of gamma rhythm and high-gamma activity in macaque visual cortex. PLoS Biol. 9:e1000610. doi: 10.1371/journal.pbio.1000610
34. Scheffer-Teixeira, R., Belchior, H., Leão, R. N., Ribeiro, S., and Tort, A. B. L. (2013). On high-frequency field oscillations (>100 Hz) and the spectral leakage of spiking activity. J. Neurosci. 33, 1535-1539. doi: 10.1523/JNEUROSCI.4217-12.2013
35. Sitdikova, G., Zakharov, A., Janackova, S., Gerasimova, E., Lebedeva, J., Inacio, A. R., et al. (2014). Isoflurane suppresses early cortical activity. Ann. Clin. Transl. Neurol. 1, 15-26. doi: 10.1002/acn3.16
36. Tort, A. B. L., Komorowski, R., Eichenbaum, H., and Kopell, N. (2010). Measuring phase-amplitude coupling between neuronal oscillations of different frequencies. J. Neurophysiol. 104, 1195-1210. doi: 10.1152/jn.00106.2010
37. Tort, A. B. L., Scheffer-Teixeira, R., Souza, B. C., Draguhn, A., and Brankaèk, J. (2013). Theta-associated high-frequency oscillations (110-160Hz) in the hippocampus and neocortex. Prog. Neurobiol. 100, 1-14. doi: 10.1016/j.pneurobio.2012.09.002
38. Van Eden, C. G., and Uylings, H. B. M. (1985). Cytoarchitectonic development of the prefrontal cortex in the rat. J. Comp. Neurol. 241, 253-267. doi: 10.1002/cne.902410302
39. Vanhatalo, S., and Kaila, K. (2006). Development of neonatal EEG activity: from phenomenology to physiology. Semin. Fetal Neonatal Med. 11, 471-478. doi: 10.1016/j.siny.2006.07.008
40. Vanhatalo, S., Voipio, J., and Kaila, K. (2005). Full-band EEG (fbEEG): a new standard for clinical electroencephalography. Clin. EEG Neurosci. 36, 311-317. doi: 10.1016/j.clinph.2004.09.015
41. Vecchierini, M. F., Andre, M., and d'Allest, A. M. (2007). Normal EEG of premature infants born between 24 and 30 weeks gestational age: terminology, definitions and maturation aspects. Neurophysiol. Clin. 37, 311-323. doi: 10.1016/j.neucli.2007.10.008
42. Yang, J. W., Hanganu-Opatz, I. L., Sun, J. J., and Luhmann, H. J. (2009). Three patterns of oscillatory activity differentially synchronize developing neocortical networks in vivo. J. Neurosci. 29, 9011-9025. doi: 10.1523/JNEUROSCI.5646-08.2009
43. Zuo, Y., Lin, A., Chang, P., and Gan, W. B. (2005). Development of long-term dendritic spine stability in diverse regions of cerebral cortex. Neuron 46, 181-189. doi: 10.1016/j.neuron.2005.04.001