A novel electrochemical aptasensor for highly sensitive detection of thrombin based on the autonomous assembly of hemin/G-quadruplex horseradish peroxidase-mimicking DNAzyme nanowires

Analytica Chimica Acta

Volumn 832, Issue , 2014, Pages 51-57

  Xie, Shunbi ^a   Chai, Yaqin ^a   Yuan, Yali ^a   Bai, Lijuan ^a   Yuan, Ruo ^a  

^a SOUTHWEST UNIVERSITY   (China)

Author keywords

Electrochemical aptasensor; Exponential isothermal amplification; Hemin G quadruplex horseradish peroxidase mimicking DNAzyme; Hybridization chain reaction; Thrombin

Indexed keywords

CHAINS; ELECTROCATALYSTS; ELECTRODES; ENZYMES; ISOTHERMS; NANOWIRES;

DNAZYME; ELECTROCHEMICAL APTASENSOR; HYBRIDIZATION CHAIN REACTIONS; ISOTHERMAL AMPLIFICATIONS; THROMBIN;

SIGNAL DETECTION;

GUANINE QUADRUPLEX; HEMIN; HORSERADISH PEROXIDASE; HYDROGEN PEROXIDE; NANOWIRE; THROMBIN; APTAMER; DEOXYRIBOZYME;

APTASENSOR; ARTICLE; CONTROLLED STUDY; ELECTROCHEMICAL DETECTION; ELECTRODE; ELECTRON TRANSPORT; ISOTHERM; LIMIT OF DETECTION; PRIORITY JOURNAL; REACTION ANALYSIS; SENSITIVITY ANALYSIS; SENSOR; CHEMISTRY; ELECTROCHEMICAL ANALYSIS; GENETIC PROCEDURES; METABOLISM;

ARMORACIA RUSTICANA;

APTAMERS, NUCLEOTIDE; BIOSENSING TECHNIQUES; DNA, CATALYTIC; ELECTROCHEMICAL TECHNIQUES; HEMIN; HORSERADISH PEROXIDASE; NANOWIRES; THROMBIN;

EID: 84901619444     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2014.04.065     Document Type: Article

References (34)

1. Tian Y., He Y., Chen Y., Yin P., Mao C. A DNAzyme that walks processively and autonomously along a one-dimensional trac. Angew. Chem. Int. Ed. 2005, 44:4355-4358.
2. Teller C., Shimron S., Willner I. Aptamer-DNAzyme hairpins for amplified biosensing. Anal. Chem. 2009, 81:9114-9119.
3. Kong D.M., Xu J., Shen H.X. Positive effects of ATP on G-quadruplex-hemin DNAzyme-mediated reactions. Anal. Chem. 2010, 82:6148-6153.
4. Deng M.G., Zhang D., Zhou Y.Y., Zhou X. Highly effective colorimetric and visual detection of nucleic acids using an asymmetrically split peroxidase DNAzyme. J. Am. Chem. Soc. 2008, 130:13095-13102.
5. Bi S., Li L., Zhang S.S. Triggered polycatenated DNA scaffolds for DNA sensors and aptasensors by a combination of rolling circle amplification and DNAzyme amplification. Anal. Chem. 2010, 82:9447-9454.
6. Pavlov V., Xiao Y., Gill R., Dishon A., Kotler M., Willner I. Amplified chemiluminescence surface detection of DNA and telomerase activity using catalytic nucleic acid labels. Anal. Chem. 2004, 76:2152-2156.
7. 2+ using hemin as a redox indicator. Electrochim. Acta 2011, 56:3153-3158.
8. Guo Y.J., Li J., Dong S.J. Hemin functionalized graphene nanosheets-based dual biosensor platforms for hydrogen peroxide and glucose. Sens. Actuators B 2011, 1:295-300.
9. Xiao Y., Pavlov V., Niazov T., Dishon A., Kotler M., Willner I. Catalytic beacons for the detection of DNA and telomerase activity. J. Am. Chem. Soc. 2004, 126:7430-7431.
10. Li Y., Li X., Ji X. Formation of G-quadruplex-hemin DNAzyme based on human telomere elongation and its application in telomerase activity detection. Biosens. Bioelectron 2011, 26:4095-4098.
11. Freeman R., Liu X., Willner I. Chemiluminescent and chemiluminescence resonance energy transfer (CRET) detection of DNA, metal ions, and aptamer-substrate complexes using hemin/G-quadruplexes and CdSe/ZnS quantum dots. J. Am. Chem. Soc. 2011, 133:11597-11604.
12. Pelossof G., Tel-Vered R., Elbaz J., Willner I. Amplified biosensing using the horseradish peroxidase-mimicking DNAzyme as an electrocatalyst. Anal. Chem. 2010, 82:4396-4402.
13. 2+ sensors using hemin/G-quadruplexes and Au nanoparticles. Chem. Eur. J. 2011, 17:8904-8912.
14. Ranasinghe R.T., Brown T. Fluorescence based strategies for genetic analysis. Chem. Commun. 2005, 44:5487-5502.
15. Marx A., Strerath M. Genotyping-from genomic DNA to genotype in a single tube. Angew. Chem. Int. Ed. 2005, 44:7842-7849.
16. Li J.S., Zhong W.W. Typing of multiple single-nucleotide polymorphisms by a microsphere-based rolling circle amplification assay. Anal. Chem. 2007, 79:9030-9038.
17. Li J.S., Deng T., Chu X., Yang R.H., Jiang J.H., Shen G.L., Yu R.Q. Rolling circle amplification combined with gold nanoparticle aggregates for highly sensitive identification of single-nucleotide polymorphisms. Anal. Chem. 2010, 82:2811-2816.
18. Wang H., Li J.S., Wang Y.X., Jin J.Y., Yang R.H., Wang K.M., Tan W.H. Combination of DNA ligase reaction and gold nanoparticle-quenched fluorescent oligonucleotides: a simple and efficient approach for fluorescent assaying of single-nucleotide polymorphisms. Anal. Chem. 2010, 82:7684-7960.
19. Fang X.E., Chen H., Yu S.N., Jiang X.Y., Kong J.L. Predicting viruses accurately by a multiplex microfluidic loop-mediated isothermal amplification chip. Anal. Chem. 2011, 83:690-695.
20. Hun X., Cheng H.C., Wang W. Design of ultrasensitive chemiluminescence detection of lysozyme in cancer cells based on nicking endonuclease signal amplification technology. Biosens. Bioelectron 2010, 26:248-254.
21. Jie G.F., Wang L., Yuan J.X., Zhang S.S. Versatile electrochemiluminescence assays for cancer cells based on dendrimer/CdSe-ZnS-quantum dot nanoclusters. Anal. Chem. 2011, 83:3873-3880.
22. Chen Q.H., Bian Z.H., Chen M., Hua X., Yao C.Y., Xia H., Kuang H., Zhang X., Huang J.F., Cai G.R., Fu W.L. Real-time monitoring of the strand displacement amplification (SDA) of human cytomegalovirus by a new SDA-piezoelectric DNA sensor system. Biosens. Bioelectron 2009, 24:3412-3418.
23. Weizmann Y., Beissenhirtz M.K., Cheglakov Z., Nowarski R., Kotler M., Willner I. A virus spotlighted by an autonomous DNA machine. Angew. Chem. 2006, 118:7544-7548.
24. Huang J., Wu Y.R., Chen Y., Zhu Z., Yang X.H., Yang C.Y.J., Wang K., Tan W.H. Pyrene-excimer probes based on the hybridization chain reaction for the detection of nucleic acids in complex biological fluids. Angew. Chem. Int. Ed. 2011, 50:401-404.
25. Zhang B., Liu B.Q., Tang D.P., Niessner R., Chen G.N., Knopp D. DNA-based hybridization chain reaction for amplified bioelectronic signal and ultrasensitive detection of proteins. Anal. Chem. 2012, 84:5392-5399.
26. Liu Y.Q., Zhang M., Yin B.C., Ye B.C. Sensitive detection of microRNAs with hairpin probe-based circular exponential amplification assay. Anal. Chem. 2012, 84:7037-7042.
27. Jia H., Li Z., Liu C., Cheng Y. Ultrasensitive detection of microRNAs by exponential isothermal amplification. Angew. Chem. Int. Ed. 2010, 49:5498-5501.
28. Chen Y., Xu J., Su J., Xiang Y., Yuan R., Chai Y.Q. In situ hybridization chain geaction amplification for universal and highly sensitive electrochemiluminescent detection of DNA. Anal. Chem. 2012, 84:7750-7755.
29. Shimron S., Wang F., Orbach R., Willner I. Amplified detection of DNA through the enzyme-free autonomous assembly of hemin/G-Quadruplex DNAzyme nanowires. Anal. Chem. 2012, 84:1042-1048.
30. Van Ness J., Van Ness L.K., Galas D.J. Isothermal reactions for the amplification of oligonucleotides. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:4504-4509.
31. Liu Y.Q., Zhang M., Yin B.C., Ye B.C. Attomolar ultrasensitive microRNA detection by DNA-scaffolded silver-nanocluster probe based on isothermal amplification. Anal. Chem. 2012, 84:5165-5169.
32. Wang X.P., Yin B.C., Wang P., Ye B.C. Highly sensitive detection of microRNAs based on isothermal exponential amplification-assisted generation of catalytic G-quadruplexDNAzyme. Biosens. Bioelectron 2013, 42:131-135.
33. Bi S., Zhang J.L., Zhang S.S. Ultrasensitive and selective DNA detection based on nicking endonuclease assisted signal amplification and its application in cancer cell detection. Chem. Commun. 2010, 46:5509-5511.
34. Hun X., Chen H.C., Wang W. Design of ultrasensitive chemiluminescence detection of lysozyme in cancer cells based on nicking endonuclease signal amplification technology. Biosens. Bioelectron 2010, 26:248-254.