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Volumn 78, Issue 1, 2014, Pages 66-86

Disparate parametric branch-support values from ambiguous characters

Author keywords

Ambiguous optimization; Bootstrap; Decisive taxon coverage; Parsimony; Redundant taxa; SH like aLRT

Indexed keywords

BAYES THEOREM; CLASSIFICATION; GENETICS; MONTE CARLO METHOD; PHYLOGENY; PROBABILITY; RUBIACEAE; STATISTICAL MODEL;

EID: 84901451257     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2014.04.029     Document Type: Article
Times cited : (17)

References (76)
  • 1
    • 3242695950 scopus 로고    scopus 로고
    • Data partitions and complex models in Bayesian analysis: the phylogeny of the gymnophthalmid lizards
    • Castoe T.A., Doan T.M., Parkinson C.L. Data partitions and complex models in Bayesian analysis: the phylogeny of the gymnophthalmid lizards. Syst. Biol. 2004, 53:448-469.
    • (2004) Syst. Biol. , vol.53 , pp. 448-469
    • Castoe, T.A.1    Doan, T.M.2    Parkinson, C.L.3
  • 2
    • 84989463275 scopus 로고
    • Problems with zero-length branches
    • Coddington J., Scharff N. Problems with zero-length branches. Cladistics 1994, 10:415-423.
    • (1994) Cladistics , vol.10 , pp. 415-423
    • Coddington, J.1    Scharff, N.2
  • 3
    • 0032099263 scopus 로고    scopus 로고
    • Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atpA sequences
    • Davis J.I., Simmons M.P., Stevenson D.W., Wendel J.F. Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atpA sequences. Syst. Biol. 1998, 47:282-310.
    • (1998) Syst. Biol. , vol.47 , pp. 282-310
    • Davis, J.I.1    Simmons, M.P.2    Stevenson, D.W.3    Wendel, J.F.4
  • 4
    • 33751012343 scopus 로고    scopus 로고
    • The limits of conventional cladistic analysis
    • Oxford University Press, Oxford, V.A. Albert (Ed.)
    • Davis J.I., Nixon K.C., Little D.P. The limits of conventional cladistic analysis. Parsimony, Phylogeny, and Genomics 2005, 119-147. Oxford University Press, Oxford. V.A. Albert (Ed.).
    • (2005) Parsimony, Phylogeny, and Genomics , pp. 119-147
    • Davis, J.I.1    Nixon, K.C.2    Little, D.P.3
  • 5
    • 84959743928 scopus 로고
    • Methods for computing Wagner trees
    • Farris J.S. Methods for computing Wagner trees. Syst. Zool. 1970, 19:83-92.
    • (1970) Syst. Zool. , vol.19 , pp. 83-92
    • Farris, J.S.1
  • 6
    • 84963071608 scopus 로고
    • On comparing the shapes of taxonomic trees
    • Farris J.S. On comparing the shapes of taxonomic trees. Syst. Zool. 1973, 22:50-54.
    • (1973) Syst. Zool. , vol.22 , pp. 50-54
    • Farris, J.S.1
  • 8
    • 84959848780 scopus 로고
    • Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters
    • Felsenstein J. Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Syst. Zool. 1973, 22:240-249.
    • (1973) Syst. Zool. , vol.22 , pp. 240-249
    • Felsenstein, J.1
  • 9
    • 84959792503 scopus 로고
    • The number of evolutionary trees
    • Felsenstein J. The number of evolutionary trees. Syst. Zool. 1978, 27:27-33.
    • (1978) Syst. Zool. , vol.27 , pp. 27-33
    • Felsenstein, J.1
  • 10
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 1978, 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: minimum change for a specific tree topology
    • Fitch W.M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 1971, 20:406-416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 13
    • 78349298734 scopus 로고    scopus 로고
    • Branch support via resampling: an empirical study
    • Freudenstein J.V., Davis J.I. Branch support via resampling: an empirical study. Cladistics 2010, 26:643-656.
    • (2010) Cladistics , vol.26 , pp. 643-656
    • Freudenstein, J.V.1    Davis, J.I.2
  • 15
    • 0043071131 scopus 로고    scopus 로고
    • Stability in phylogenetic formulations and its relationship to nodal support
    • Giribet G. Stability in phylogenetic formulations and its relationship to nodal support. Syst. Biol. 2003, 52:554-564.
    • (2003) Syst. Biol. , vol.52 , pp. 554-564
    • Giribet, G.1
  • 16
    • 0033499153 scopus 로고    scopus 로고
    • Analyzing large data sets in reasonable times: solutions for composite optima
    • Goloboff P.A. Analyzing large data sets in reasonable times: solutions for composite optima. Cladistics 1999, 15:415-428.
    • (1999) Cladistics , vol.15 , pp. 415-428
    • Goloboff, P.A.1
  • 17
    • 33644608262 scopus 로고    scopus 로고
    • Parsimony and Bayesian phylogenetics
    • Oxford University Press, Oxford, V.A. Albert (Ed.)
    • Goloboff P.A., Pol D. Parsimony and Bayesian phylogenetics. Parsimony, Phylogeny, and Genomics 2005, 148-159. Oxford University Press, Oxford. V.A. Albert (Ed.).
    • (2005) Parsimony, Phylogeny, and Genomics , pp. 148-159
    • Goloboff, P.A.1    Pol, D.2
  • 19
    • 45749124657 scopus 로고    scopus 로고
    • TNT, a free program for phylogenetic analysis
    • Goloboff P.A., Farris J.S., Nixon K.C. TNT, a free program for phylogenetic analysis. Cladistics 2008, 24:774-786.
    • (2008) Cladistics , vol.24 , pp. 774-786
    • Goloboff, P.A.1    Farris, J.S.2    Nixon, K.C.3
  • 20
    • 79952449849 scopus 로고    scopus 로고
    • A study of conflict between molecular phylogeny and taxonomy in the Desmidiaceae (Streptophyta, Viridiplantae): analyses of 291 rbcL sequences
    • Gontcharov A.A., Melkonian M. A study of conflict between molecular phylogeny and taxonomy in the Desmidiaceae (Streptophyta, Viridiplantae): analyses of 291 rbcL sequences. Protist 2011, 162:253-267.
    • (2011) Protist , vol.162 , pp. 253-267
    • Gontcharov, A.A.1    Melkonian, M.2
  • 21
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S., Dufayard J.-F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 22
    • 84873461215 scopus 로고    scopus 로고
    • Phylogeny of the Asian Hedyotis-Oldenlandia complex (Spermacoceae, Rubiaceae): evidence for high levels of polyphyly and parallel evolution of diplophragmous capsules
    • Guo X., Wang R.-J., Simmons M.P., But P.P.-H., Yu J. Phylogeny of the Asian Hedyotis-Oldenlandia complex (Spermacoceae, Rubiaceae): evidence for high levels of polyphyly and parallel evolution of diplophragmous capsules. Mol. Phylogenet. Evol. 2013, 67:110-122.
    • (2013) Mol. Phylogenet. Evol. , vol.67 , pp. 110-122
    • Guo, X.1    Wang, R.-J.2    Simmons, M.P.3    But, P.P.-H.4    Yu, J.5
  • 25
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Academic Press, New York
    • Jukes T.H., Cantor C.R. Evolution of protein molecules. Mammalian Protein Metabolism 1969, vol. 3:21-132. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 26
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 27
    • 0031395952 scopus 로고    scopus 로고
    • Testability and the refutation and corroboration of cladistic hypotheses
    • Kluge A.G. Testability and the refutation and corroboration of cladistic hypotheses. Cladistics 1997, 13:81-96.
    • (1997) Cladistics , vol.13 , pp. 81-96
    • Kluge, A.G.1
  • 28
    • 67449163699 scopus 로고    scopus 로고
    • The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
    • Lemmon A.R., Brown J.M., Stanger-Hall K., Lemmon E.M. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst. Biol. 2009, 58:130-145.
    • (2009) Syst. Biol. , vol.58 , pp. 130-145
    • Lemmon, A.R.1    Brown, J.M.2    Stanger-Hall, K.3    Lemmon, E.M.4
  • 30
    • 84901452488 scopus 로고    scopus 로고
    • Mesquite: A Modular System for Evolutionary Analysis. Published by the authors. <>.
    • Maddison, W.P., Maddison, D.R., 2011. Mesquite: A Modular System for Evolutionary Analysis. Published by the authors. <>. http://mesquiteproject.org/mesquite/mesquite.html.
    • (2011)
    • Maddison, W.P.1    Maddison, D.R.2
  • 32
    • 81855228995 scopus 로고    scopus 로고
    • Delimitation of the segregate genera of Maytenus sensu lato (Celastraceae) based on morphological and molecular characters
    • McKenna M.J., Simmons M.P., Bacon C.D., Lombardi J.A. Delimitation of the segregate genera of Maytenus sensu lato (Celastraceae) based on morphological and molecular characters. Syst. Bot. 2011, 36:922-932.
    • (2011) Syst. Bot. , vol.36 , pp. 922-932
    • McKenna, M.J.1    Simmons, M.P.2    Bacon, C.D.3    Lombardi, J.A.4
  • 33
    • 84876519306 scopus 로고    scopus 로고
    • Ultrafast approximation for phylogenetic bootstrap
    • Minh B.Q., Nguyen M.A.T., von Haeseler A. Ultrafast approximation for phylogenetic bootstrap. Mol. Biol. Evol. 2013, 30:1188-1195.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 1188-1195
    • Minh, B.Q.1    Nguyen, M.A.T.2    von Haeseler, A.3
  • 34
    • 0033504552 scopus 로고    scopus 로고
    • The parsimony ratchet, a new method for rapid parsimony analysis
    • Nixon K.C. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 1999, 15:407-414.
    • (1999) Cladistics , vol.15 , pp. 407-414
    • Nixon, K.C.1
  • 35
    • 0026282569 scopus 로고
    • Polymorphic taxa, missing values and cladistic analysis
    • Nixon K.C., Davis J.I. Polymorphic taxa, missing values and cladistic analysis. Cladistics 1991, 7:233-241.
    • (1991) Cladistics , vol.7 , pp. 233-241
    • Nixon, K.C.1    Davis, J.I.2
  • 36
    • 0002272008 scopus 로고
    • Extinction and the origin of species
    • Columbia University Press, New York, Q.D. Wheeler, M. Novacek (Eds.)
    • Nixon K.C., Wheeler Q.D. Extinction and the origin of species. Extinction and Phylogeny 1991, 119-143. Columbia University Press, New York. Q.D. Wheeler, M. Novacek (Eds.).
    • (1991) Extinction and Phylogeny , pp. 119-143
    • Nixon, K.C.1    Wheeler, Q.D.2
  • 37
    • 0026495826 scopus 로고
    • Progress with methods for constructing evolutionary trees
    • Penny D., Hendy M.D., Steel M.A. Progress with methods for constructing evolutionary trees. Trends Ecol. Evol. 1992, 7:73-79.
    • (1992) Trends Ecol. Evol. , vol.7 , pp. 73-79
    • Penny, D.1    Hendy, M.D.2    Steel, M.A.3
  • 38
    • 84921131036 scopus 로고
    • Philosophy and the transformation of cladistics
    • Platnick N.I. Philosophy and the transformation of cladistics. Syst. Zool. 1979, 28:537-546.
    • (1979) Syst. Zool. , vol.28 , pp. 537-546
    • Platnick, N.I.1
  • 40
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 42
    • 0034351392 scopus 로고    scopus 로고
    • Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae)
    • Sanderson M.J., Wojciechowski M.F. Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae). Syst. Biol. 2000, 49:671-685.
    • (2000) Syst. Biol. , vol.49 , pp. 671-685
    • Sanderson, M.J.1    Wojciechowski, M.F.2
  • 43
    • 77952490857 scopus 로고    scopus 로고
    • Phylogenomics with incomplete taxon coverage: the limits of inference
    • Sanderson M.J., McMahon M.J., Steel M. Phylogenomics with incomplete taxon coverage: the limits of inference. BMC Evol. Biol. 2010, 10:155.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 155
    • Sanderson, M.J.1    McMahon, M.J.2    Steel, M.3
  • 44
    • 79960670940 scopus 로고    scopus 로고
    • Terraces in phylogenetic tree space
    • Sanderson M.J., McMahon M.M., Steel M. Terraces in phylogenetic tree space. Science 2011, 333:448-450.
    • (2011) Science , vol.333 , pp. 448-450
    • Sanderson, M.J.1    McMahon, M.M.2    Steel, M.3
  • 46
    • 0002657605 scopus 로고
    • Analysis of taxonomic congruence among morphological, ecological, and biogeographic data sets for the Leptopodomorpha (Hemiptera)
    • Schuh R.T., Polhemus J.T. Analysis of taxonomic congruence among morphological, ecological, and biogeographic data sets for the Leptopodomorpha (Hemiptera). Syst. Zool. 1980, 29:1-26.
    • (1980) Syst. Zool. , vol.29 , pp. 1-26
    • Schuh, R.T.1    Polhemus, J.T.2
  • 47
    • 0035720643 scopus 로고    scopus 로고
    • Majority does not rule: the trouble with majority-rule consensus trees
    • Sharkey M.J., Leathers J.W. Majority does not rule: the trouble with majority-rule consensus trees. Cladistics 2001, 17:282-284.
    • (2001) Cladistics , vol.17 , pp. 282-284
    • Sharkey, M.J.1    Leathers, J.W.2
  • 48
    • 0000215283 scopus 로고    scopus 로고
    • Success of parsimony in the four-taxon case: long-branch repulsion by likelihood in the Farris zone
    • Siddall M.E. Success of parsimony in the four-taxon case: long-branch repulsion by likelihood in the Farris zone. Cladistics 1998, 14:209-220.
    • (1998) Cladistics , vol.14 , pp. 209-220
    • Siddall, M.E.1
  • 49
    • 0035725563 scopus 로고    scopus 로고
    • Philosophy and phylogenetic inference: a comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration
    • Siddall M.E. Philosophy and phylogenetic inference: a comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration. Cladistics 2001, 17:395-399.
    • (2001) Cladistics , vol.17 , pp. 395-399
    • Siddall, M.E.1
  • 51
    • 83655167077 scopus 로고    scopus 로고
    • Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data
    • Simmons M.P. Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data. Mol. Phylogenet. Evol. 2012, 62:472-484.
    • (2012) Mol. Phylogenet. Evol. , vol.62 , pp. 472-484
    • Simmons, M.P.1
  • 52
    • 84858080561 scopus 로고    scopus 로고
    • Misleading results of likelihood-based phylogenetic analyses in the presence of missing data
    • Simmons M.P. Misleading results of likelihood-based phylogenetic analyses in the presence of missing data. Cladistics 2012, 28:208-222.
    • (2012) Cladistics , vol.28 , pp. 208-222
    • Simmons, M.P.1
  • 53
    • 79960573402 scopus 로고    scopus 로고
    • Spurious 99% bootstrap and jackknife support for unsupported clades
    • Simmons M.P., Freudenstein J.V. Spurious 99% bootstrap and jackknife support for unsupported clades. Mol. Phylogenet. Evol. 2011, 61:177-191.
    • (2011) Mol. Phylogenet. Evol. , vol.61 , pp. 177-191
    • Simmons, M.P.1    Freudenstein, J.V.2
  • 54
    • 84880157756 scopus 로고    scopus 로고
    • An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters
    • Simmons M.P., Goloboff P.A. An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters. Mol. Phylogenet. Evol. 2013, 69:265-275.
    • (2013) Mol. Phylogenet. Evol. , vol.69 , pp. 265-275
    • Simmons, M.P.1    Goloboff, P.A.2
  • 55
    • 84875054472 scopus 로고    scopus 로고
    • Quantification and relative severity of inflated branch-support values generated by alternative methods: an empirical example
    • Simmons M.P., Norton A.P. Quantification and relative severity of inflated branch-support values generated by alternative methods: an empirical example. Mol. Phylogenet. Evol. 2013, 67:277-296.
    • (2013) Mol. Phylogenet. Evol. , vol.67 , pp. 277-296
    • Simmons, M.P.1    Norton, A.P.2
  • 56
    • 84896270356 scopus 로고    scopus 로고
    • Divergent maximum-likelihood-branch-support values for polytomies
    • Simmons M.P., Norton A.P. Divergent maximum-likelihood-branch-support values for polytomies. Mol. Phylogenet. Evol. 2014, 73:87-96.
    • (2014) Mol. Phylogenet. Evol. , vol.73 , pp. 87-96
    • Simmons, M.P.1    Norton, A.P.2
  • 57
    • 33745034045 scopus 로고    scopus 로고
    • Quantification of the success of phylogenetic inference in simulations
    • Simmons M.P., Webb C.T. Quantification of the success of phylogenetic inference in simulations. Cladistics 2006, 22:249-255.
    • (2006) Cladistics , vol.22 , pp. 249-255
    • Simmons, M.P.1    Webb, C.T.2
  • 58
    • 34447280568 scopus 로고    scopus 로고
    • The relative performance of indel-coding methods in simulations
    • Simmons M.P., Müller K., Norton A.P. The relative performance of indel-coding methods in simulations. Mol. Phylogenet. Evol. 2007, 44:724-740.
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 724-740
    • Simmons, M.P.1    Müller, K.2    Norton, A.P.3
  • 59
    • 56649102291 scopus 로고    scopus 로고
    • The relative sensitivity of different alignment methods and character codings in sensitivity analysis
    • Simmons M.P., Müller K.F., Webb C.T. The relative sensitivity of different alignment methods and character codings in sensitivity analysis. Cladistics 2008, 24:1039-1050.
    • (2008) Cladistics , vol.24 , pp. 1039-1050
    • Simmons, M.P.1    Müller, K.F.2    Webb, C.T.3
  • 60
    • 84860811512 scopus 로고    scopus 로고
    • Phylogeny of Celastraceae subfamilies Cassinoideae and Tripterygioideae inferred from morphological characters and nuclear and plastid loci
    • Simmons M.P., Bacon C.D., Cappa J.J., McKenna M.J. Phylogeny of Celastraceae subfamilies Cassinoideae and Tripterygioideae inferred from morphological characters and nuclear and plastid loci. Syst. Bot. 2012, 37:456-467.
    • (2012) Syst. Bot. , vol.37 , pp. 456-467
    • Simmons, M.P.1    Bacon, C.D.2    Cappa, J.J.3    McKenna, M.J.4
  • 62
    • 0034918949 scopus 로고    scopus 로고
    • Global lability, regional resolution, and majority-rule consensus bias
    • Sumrall C.D., Brochu C.A., Merck J.W. Global lability, regional resolution, and majority-rule consensus bias. Paleobiology 2001, 27:254-261.
    • (2001) Paleobiology , vol.27 , pp. 254-261
    • Sumrall, C.D.1    Brochu, C.A.2    Merck, J.W.3
  • 63
    • 0037058983 scopus 로고    scopus 로고
    • Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
    • Suzuki Y., Glazko G.V., Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc. Natl. Acad. Sci. USA 2002, 99:16138-16143.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 16138-16143
    • Suzuki, Y.1    Glazko, G.V.2    Nei, M.3
  • 66
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Sinauer Associates, Sunderland, D.M. Hillis, C. Moritz, B.K. Mable (Eds.)
    • Swofford D.L., Olsen G.J., Waddell P.J., Hillis D.M. Phylogenetic inference. Molecular Systematics 1996, 407-514. Sinauer Associates, Sunderland. D.M. Hillis, C. Moritz, B.K. Mable (Eds.).
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 67
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems in the analysis of DNA sequences
    • Tavaré S. Some probabilistic and statistical problems in the analysis of DNA sequences. Lect. Math. Life Sci. 1986, 17:57-86.
    • (1986) Lect. Math. Life Sci. , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 68
    • 0028878618 scopus 로고
    • Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data
    • Wheeler W.C. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst. Biol. 1995, 44:321-331.
    • (1995) Syst. Biol. , vol.44 , pp. 321-331
    • Wheeler, W.C.1
  • 69
    • 11944268116 scopus 로고
    • Arbitrary resolutions, missing entries, and the problem of zero-length branches in parsimony analysis
    • Wilkinson M. Arbitrary resolutions, missing entries, and the problem of zero-length branches in parsimony analysis. Syst. Biol. 1995, 44:108-111.
    • (1995) Syst. Biol. , vol.44 , pp. 108-111
    • Wilkinson, M.1
  • 70
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 1993, 10:1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 71
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 72
    • 0030749810 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo method
    • Yang Z., Rannala B. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo method. Mol. Biol. Evol. 1997, 14:717-724.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 717-724
    • Yang, Z.1    Rannala, B.2
  • 73
    • 21044445996 scopus 로고    scopus 로고
    • Phylogeny and evolution of the major intrinsic protein family
    • Zardoya R. Phylogeny and evolution of the major intrinsic protein family. Biol. Cell 2005, 97:397-414.
    • (2005) Biol. Cell , vol.97 , pp. 397-414
    • Zardoya, R.1
  • 74
    • 33750387249 scopus 로고    scopus 로고
    • Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion.
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. Dissertation, The University of Texas at Austin.
    • (2006) Ph.D. Dissertation, The University of Texas at Austin.
    • Zwickl, D.J.1
  • 75
    • 84901470128 scopus 로고    scopus 로고
    • GARLI 0.96 Settings Cheat Sheet (Smithsonian, June 2009). Distributed by the author.
    • Zwickl, D.J., 2009. GARLI 0.96 Settings Cheat Sheet (Smithsonian, June 2009). Distributed by the author.
    • (2009)
    • Zwickl, D.J.1
  • 76
    • 84901397132 scopus 로고    scopus 로고
    • GARLI Configuration Settings. <> (downloaded on 30.05.12).
    • Zwickl, D.J., 2012. GARLI Configuration Settings. <> (downloaded on 30.05.12). https://www.nescent.org/wg_garli/GARLI_Configuration_Settings.
    • (2012)
    • Zwickl, D.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.