메뉴 건너뛰기




Volumn 19, Issue 6, 2014, Pages 390-398

Genotype × environment interaction QTL mapping in plants: Lessons from Arabidopsis

Author keywords

Antagonistic pleiotropy; Genotype environment interaction; Phenotypic plasticity; QTL environment interaction

Indexed keywords

ARABIDOPSIS; CHROMOSOME MAP; EVOLUTION; GENETICS; GENOTYPE; GENOTYPE ENVIRONMENT INTERACTION; QUANTITATIVE TRAIT LOCUS; REPRODUCTIVE FITNESS;

EID: 84901392210     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2014.01.001     Document Type: Review
Times cited : (200)

References (109)
  • 1
    • 15944412148 scopus 로고    scopus 로고
    • Constraints on the evolution of adaptive phenotypic plasticity in plants
    • Van Kleunen M., Fischer M. Constraints on the evolution of adaptive phenotypic plasticity in plants. New Phytol. 2005, 166:49-60.
    • (2005) New Phytol. , vol.166 , pp. 49-60
    • Van Kleunen, M.1    Fischer, M.2
  • 2
    • 33745562481 scopus 로고    scopus 로고
    • Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis
    • Mitchell-Olds T., Schmitt J. Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis. Nature 2006, 441:947-952.
    • (2006) Nature , vol.441 , pp. 947-952
    • Mitchell-Olds, T.1    Schmitt, J.2
  • 3
    • 78649632298 scopus 로고    scopus 로고
    • Plant phenotypic plasticity in a changing climate
    • Nicotra A.B., et al. Plant phenotypic plasticity in a changing climate. Trends Plant Sci. 2010, 15:684-692.
    • (2010) Trends Plant Sci. , vol.15 , pp. 684-692
    • Nicotra, A.B.1
  • 4
    • 77952626220 scopus 로고    scopus 로고
    • Frontiers in phenotypic plasticity research: new questions about mechanisms, induced responses and ecological impacts
    • Ellers J., Stuefer J. Frontiers in phenotypic plasticity research: new questions about mechanisms, induced responses and ecological impacts. Evol. Ecol. 2010, 24:523-526.
    • (2010) Evol. Ecol. , vol.24 , pp. 523-526
    • Ellers, J.1    Stuefer, J.2
  • 5
    • 0034489590 scopus 로고    scopus 로고
    • Phenotypic plasticity for plant development, function and life history
    • Sultan S.E. Phenotypic plasticity for plant development, function and life history. Trends Plant Sci. 2000, 5:537-542.
    • (2000) Trends Plant Sci. , vol.5 , pp. 537-542
    • Sultan, S.E.1
  • 6
    • 84862492761 scopus 로고    scopus 로고
    • Adaptive transgenerational plasticity in plants: case studies, mechanisms, and implications for natural populations
    • Herman J.J., Sultan S.E. Adaptive transgenerational plasticity in plants: case studies, mechanisms, and implications for natural populations. Front. Plant Sci. 2011, 10.3389/fpls.2011.00102.
    • (2011) Front. Plant Sci.
    • Herman, J.J.1    Sultan, S.E.2
  • 7
    • 0031915546 scopus 로고    scopus 로고
    • Costs and limits of phenotypic plasticity
    • DeWitt T.J., et al. Costs and limits of phenotypic plasticity. Trends Ecol. Evol. 1998, 13:77-81.
    • (1998) Trends Ecol. Evol. , vol.13 , pp. 77-81
    • DeWitt, T.J.1
  • 8
    • 23944491611 scopus 로고    scopus 로고
    • Evolution of phenotypic plasticity: where are we going now?
    • Pigliucci M. Evolution of phenotypic plasticity: where are we going now?. Trends Ecol. Evol. 2005, 20:481-486.
    • (2005) Trends Ecol. Evol. , vol.20 , pp. 481-486
    • Pigliucci, M.1
  • 9
    • 84871906134 scopus 로고    scopus 로고
    • Natural variation in abiotic stress and climate change responses in Arabidopsis: implications for twenty-first-century agriculture
    • Assmann S.M. Natural variation in abiotic stress and climate change responses in Arabidopsis: implications for twenty-first-century agriculture. Int. J. Plant Sci. 2013, 174:3-26.
    • (2013) Int. J. Plant Sci. , vol.174 , pp. 3-26
    • Assmann, S.M.1
  • 10
    • 84878996560 scopus 로고    scopus 로고
    • Natural variation and genetic constraints on drought tolerance
    • Juenger T.E. Natural variation and genetic constraints on drought tolerance. Curr. Opin. Plant Biol. 2013, 16:274-281.
    • (2013) Curr. Opin. Plant Biol. , vol.16 , pp. 274-281
    • Juenger, T.E.1
  • 11
    • 0027333437 scopus 로고
    • Genetics and evolution of phenotypic plasticity
    • Scheiner S.M. Genetics and evolution of phenotypic plasticity. Annu. Rev. Ecol. Syst. 1993, 24:35-68.
    • (1993) Annu. Rev. Ecol. Syst. , vol.24 , pp. 35-68
    • Scheiner, S.M.1
  • 12
    • 77956698809 scopus 로고    scopus 로고
    • Using genotype-by-environment interaction for crop cultivar development
    • Academic Press, L.S. Donald (Ed.)
    • Kang M.S. Using genotype-by-environment interaction for crop cultivar development. Advances in Agronomy 1997, 199-252. Academic Press. L.S. Donald (Ed.).
    • (1997) Advances in Agronomy , pp. 199-252
    • Kang, M.S.1
  • 13
    • 84855268714 scopus 로고    scopus 로고
    • Natural variation in Arabidopsis: from molecular genetics to ecological genomics
    • Weigel D. Natural variation in Arabidopsis: from molecular genetics to ecological genomics. Plant Physiol. 2012, 158:2-22.
    • (2012) Plant Physiol. , vol.158 , pp. 2-22
    • Weigel, D.1
  • 14
    • 58549099843 scopus 로고    scopus 로고
    • Genetics of phenotypic plasticity: QTL analysis in barley, Hordeum vulgare
    • Lacaze X., et al. Genetics of phenotypic plasticity: QTL analysis in barley, Hordeum vulgare. Heredity 2009, 102:163-173.
    • (2009) Heredity , vol.102 , pp. 163-173
    • Lacaze, X.1
  • 15
    • 0035850895 scopus 로고    scopus 로고
    • Phenotypic plasticity in the interactions and evolution of species
    • Agrawal A.A. Phenotypic plasticity in the interactions and evolution of species. Science 2001, 294:321-326.
    • (2001) Science , vol.294 , pp. 321-326
    • Agrawal, A.A.1
  • 16
    • 34250195022 scopus 로고    scopus 로고
    • Indirect genetic effects from ecological interactions in Arabidopsis thaliana
    • Mutic J.J., Wolf J.B. Indirect genetic effects from ecological interactions in Arabidopsis thaliana. Mol. Ecol. 2007, 16:2371-2381.
    • (2007) Mol. Ecol. , vol.16 , pp. 2371-2381
    • Mutic, J.J.1    Wolf, J.B.2
  • 17
    • 84857710137 scopus 로고    scopus 로고
    • The effect of environmental heterogeneity on RPW8-mediated resistance to powdery mildews in Arabidopsis thaliana
    • Jorgensen T.H. The effect of environmental heterogeneity on RPW8-mediated resistance to powdery mildews in Arabidopsis thaliana. Annals Bot. (Lond.) 2012, 109:833-842.
    • (2012) Annals Bot. (Lond.) , vol.109 , pp. 833-842
    • Jorgensen, T.H.1
  • 18
    • 40849097776 scopus 로고    scopus 로고
    • Heritability in the genomics era: concepts and misconceptions
    • Visscher P.M., et al. Heritability in the genomics era: concepts and misconceptions. Nat. Rev. Genet. 2008, 9:255-266.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 255-266
    • Visscher, P.M.1
  • 19
    • 0035671407 scopus 로고    scopus 로고
    • The genetic architecture of quantitative traits
    • Mackay T.F.C. The genetic architecture of quantitative traits. Annu. Rev. Genet. 2001, 35:303-339.
    • (2001) Annu. Rev. Genet. , vol.35 , pp. 303-339
    • Mackay, T.F.C.1
  • 20
    • 54949113665 scopus 로고    scopus 로고
    • Molecular markers and selection for complex traits in plants: learning from the last 20 years
    • Bernardo R. Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci. 2008, 48:1649-1664.
    • (2008) Crop Sci. , vol.48 , pp. 1649-1664
    • Bernardo, R.1
  • 21
    • 0028093843 scopus 로고
    • Genotype by environment interaction and international breeding programmes
    • Ceccarelli S., et al. Genotype by environment interaction and international breeding programmes. Exp. Agric. 1994, 30:177-187.
    • (1994) Exp. Agric. , vol.30 , pp. 177-187
    • Ceccarelli, S.1
  • 22
    • 0037734547 scopus 로고    scopus 로고
    • Estimating and interpreting heritability for plant breeding: an update
    • John Wiley & Sons, Inc. J. Janick (Ed.)
    • Holland J.B., et al. Estimating and interpreting heritability for plant breeding: an update. Plant Breeding Reviews (Vol. 22) 2003, 9-112. John Wiley & Sons, Inc. J. Janick (Ed.).
    • (2003) Plant Breeding Reviews (Vol. 22) , pp. 9-112
    • Holland, J.B.1
  • 23
    • 77951716714 scopus 로고    scopus 로고
    • Adaptation, plasticity, and extinction in a changing environment: towards a predictive theory
    • Chevin L-M., et al. Adaptation, plasticity, and extinction in a changing environment: towards a predictive theory. PLoS Biol. 2010, 8:e1000357.
    • (2010) PLoS Biol. , vol.8
    • Chevin, L.-M.1
  • 24
    • 77952557918 scopus 로고    scopus 로고
    • Missing heritability and strategies for finding the underlying causes of complex disease
    • Eichler E.E., et al. Missing heritability and strategies for finding the underlying causes of complex disease. Nat. Rev. Genet. 2010, 11:446-450.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 446-450
    • Eichler, E.E.1
  • 25
    • 80055004691 scopus 로고    scopus 로고
    • Genome-wide association studies in plants: the missing heritability is in the field
    • Brachi B., et al. Genome-wide association studies in plants: the missing heritability is in the field. Genome Biol. 2011, 12:232. http://dx.doi.org/210.1186/gb-2011-1112-1110-1232.
    • (2011) Genome Biol. , vol.12 , pp. 232
    • Brachi, B.1
  • 26
    • 70349956433 scopus 로고    scopus 로고
    • Finding the missing heritability of complex diseases
    • Manolio T.A., et al. Finding the missing heritability of complex diseases. Nature 2009, 461:747-753.
    • (2009) Nature , vol.461 , pp. 747-753
    • Manolio, T.A.1
  • 27
    • 78549289532 scopus 로고    scopus 로고
    • Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana
    • Bergelson J., Roux F. Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat. Rev. Genet. 2010, 11:867-879.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 867-879
    • Bergelson, J.1    Roux, F.2
  • 28
    • 77951298590 scopus 로고    scopus 로고
    • Detection and use of QTL for complex traits in multiple environments
    • van Eeuwijk F.A., et al. Detection and use of QTL for complex traits in multiple environments. Curr. Opin. Plant Biol. 2010, 13:193-205.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 193-205
    • van Eeuwijk, F.A.1
  • 29
    • 2442671971 scopus 로고    scopus 로고
    • Naturally occuring genetic variation in Arabidopsis thaliana
    • Koornneef M., et al. Naturally occuring genetic variation in Arabidopsis thaliana. Annu. Rev. Plant Biol. 2004, 55:141-172.
    • (2004) Annu. Rev. Plant Biol. , vol.55 , pp. 141-172
    • Koornneef, M.1
  • 30
    • 80053587873 scopus 로고    scopus 로고
    • Adaptation to climate across the Arabidopsis thaliana genome
    • Hancock A.M., et al. Adaptation to climate across the Arabidopsis thaliana genome. Science 2011, 334:83-86.
    • (2011) Science , vol.334 , pp. 83-86
    • Hancock, A.M.1
  • 31
    • 0028975542 scopus 로고
    • Adaptive phenotypic plasticity: consensus and controversy
    • Via S., et al. Adaptive phenotypic plasticity: consensus and controversy. Trends Ecol. Evol. 1995, 10:212-217.
    • (1995) Trends Ecol. Evol. , vol.10 , pp. 212-217
    • Via, S.1
  • 32
    • 58549087805 scopus 로고    scopus 로고
    • Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation
    • Alcázar R., et al. Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:334-339.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 334-339
    • Alcázar, R.1
  • 33
    • 84855925920 scopus 로고    scopus 로고
    • Rare and common variants: twenty arguments
    • Gibson G. Rare and common variants: twenty arguments. Nat. Rev. Genet. 2012, 13:135-145.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 135-145
    • Gibson, G.1
  • 34
    • 79957679448 scopus 로고    scopus 로고
    • Epigenetic contribution to stress adaptation in plants
    • Mirouze M., Paszkowski J. Epigenetic contribution to stress adaptation in plants. Curr. Opin. Plant Biol. 2011, 14:267-274.
    • (2011) Curr. Opin. Plant Biol. , vol.14 , pp. 267-274
    • Mirouze, M.1    Paszkowski, J.2
  • 35
    • 77952615670 scopus 로고    scopus 로고
    • Experimental alteration of DNA methylation affects the phenotypic plasticity of ecologically relevant traits in Arabidopsis thaliana
    • Bossdorf O., et al. Experimental alteration of DNA methylation affects the phenotypic plasticity of ecologically relevant traits in Arabidopsis thaliana. Evol. Ecol. 2010, 24:541-553.
    • (2010) Evol. Ecol. , vol.24 , pp. 541-553
    • Bossdorf, O.1
  • 36
    • 65249186659 scopus 로고    scopus 로고
    • Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes
    • Reinders J., et al. Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes. Genes Dev. 2009, 23:939-950.
    • (2009) Genes Dev. , vol.23 , pp. 939-950
    • Reinders, J.1
  • 37
    • 84870231986 scopus 로고    scopus 로고
    • Epigenetic variation creates potential for evolution of plant phenotypic plasticity
    • Zhang Y-Y., et al. Epigenetic variation creates potential for evolution of plant phenotypic plasticity. New Phytol. 2013, 197:314-322.
    • (2013) New Phytol. , vol.197 , pp. 314-322
    • Zhang, Y.-Y.1
  • 38
    • 84861084790 scopus 로고    scopus 로고
    • Stress-induced chromatin changes: a critical view on their heritability
    • Pecinka A., Mittelsten Scheid O. Stress-induced chromatin changes: a critical view on their heritability. Plant Cell Physiol. 2012, 53:801-808.
    • (2012) Plant Cell Physiol. , vol.53 , pp. 801-808
    • Pecinka, A.1    Mittelsten Scheid, O.2
  • 39
    • 84872478895 scopus 로고    scopus 로고
    • Genetic trade-offs and conditional neutrality contribute to local adaptation
    • Anderson J.T., et al. Genetic trade-offs and conditional neutrality contribute to local adaptation. Mol. Ecol. 2013, 22:699-708.
    • (2013) Mol. Ecol. , vol.22 , pp. 699-708
    • Anderson, J.T.1
  • 40
    • 0026591963 scopus 로고
    • The evolutionary maintenance of alternative phenotypes
    • Moran N.A. The evolutionary maintenance of alternative phenotypes. Am. Nat. 1992, 139:971-989.
    • (1992) Am. Nat. , vol.139 , pp. 971-989
    • Moran, N.A.1
  • 41
    • 0642349134 scopus 로고    scopus 로고
    • Climb every mountain?
    • Elena S.F., Sanjuán R. Climb every mountain?. Science 2003, 302:2074-2075.
    • (2003) Science , vol.302 , pp. 2074-2075
    • Elena, S.F.1    Sanjuán, R.2
  • 42
    • 84872476721 scopus 로고    scopus 로고
    • Genetic basis of local adaptation and flowering time variation in Arabidopsis lyrata
    • Leinonen P.H., et al. Genetic basis of local adaptation and flowering time variation in Arabidopsis lyrata. Mol. Ecol. 2013, 22:709-723.
    • (2013) Mol. Ecol. , vol.22 , pp. 709-723
    • Leinonen, P.H.1
  • 43
    • 79959345137 scopus 로고    scopus 로고
    • Evolutionary genetics of plant adaptation
    • Anderson J.T., et al. Evolutionary genetics of plant adaptation. Trends Genet. 2011, 27:258-266.
    • (2011) Trends Genet. , vol.27 , pp. 258-266
    • Anderson, J.T.1
  • 44
    • 80053612343 scopus 로고    scopus 로고
    • A map of local adaptation in Arabidopsis thaliana
    • Fournier-Level A., et al. A map of local adaptation in Arabidopsis thaliana. Science 2011, 334:86-89.
    • (2011) Science , vol.334 , pp. 86-89
    • Fournier-Level, A.1
  • 45
    • 77954297751 scopus 로고    scopus 로고
    • Is local adaptation in Mimulus guttatus caused by trade-offs at individual loci?
    • Hall M.C., et al. Is local adaptation in Mimulus guttatus caused by trade-offs at individual loci?. Mol. Ecol. 2010, 19:2739-2753.
    • (2010) Mol. Ecol. , vol.19 , pp. 2739-2753
    • Hall, M.C.1
  • 46
    • 77953198418 scopus 로고    scopus 로고
    • Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana
    • Todesco M., et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature 2010, 465:632-636.
    • (2010) Nature , vol.465 , pp. 632-636
    • Todesco, M.1
  • 47
    • 36749096272 scopus 로고    scopus 로고
    • Antagonistic pleiotropic effects reduce the potential adaptive value of the FRIGIDA locus
    • Scarcelli N., et al. Antagonistic pleiotropic effects reduce the potential adaptive value of the FRIGIDA locus. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:16986-16991.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 16986-16991
    • Scarcelli, N.1
  • 48
    • 34447132523 scopus 로고    scopus 로고
    • Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field
    • Korves T.M., et al. Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. Am. Nat. 2007, 169:E141-E157.
    • (2007) Am. Nat. , vol.169
    • Korves, T.M.1
  • 49
    • 37249055906 scopus 로고    scopus 로고
    • A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in Maize
    • Boer M.P., et al. A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in Maize. Genetics 2007, 177:1801-1813.
    • (2007) Genetics , vol.177 , pp. 1801-1813
    • Boer, M.P.1
  • 50
    • 0036245218 scopus 로고    scopus 로고
    • Mapping and analysis of quantitative trait loci in experimental populations
    • Doerge R.W. Mapping and analysis of quantitative trait loci in experimental populations. Nat. Rev. Genet. 2002, 3:43-52.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 43-52
    • Doerge, R.W.1
  • 51
    • 33847297054 scopus 로고    scopus 로고
    • Genetic architecture of complex traits in plants
    • Holland J.B. Genetic architecture of complex traits in plants. Curr. Opin. Plant Biol. 2007, 10:156-161.
    • (2007) Curr. Opin. Plant Biol. , vol.10 , pp. 156-161
    • Holland, J.B.1
  • 52
    • 67651108806 scopus 로고    scopus 로고
    • The genetics of quantitative traits: challenges and prospects
    • Mackay T.F.C., et al. The genetics of quantitative traits: challenges and prospects. Nat. Rev. Genet. 2009, 10:565-577.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 565-577
    • Mackay, T.F.C.1
  • 53
    • 4544317910 scopus 로고    scopus 로고
    • Mixed models including environmental covariables for studying QTL by environment interaction
    • Malosetti M., et al. Mixed models including environmental covariables for studying QTL by environment interaction. Euphytica 2004, 137:139-145.
    • (2004) Euphytica , vol.137 , pp. 139-145
    • Malosetti, M.1
  • 54
    • 84879467512 scopus 로고    scopus 로고
    • The statistical analysis of multi-environment data: modeling genotype-by-environment interaction and its genetic basis
    • Malosetti M., et al. The statistical analysis of multi-environment data: modeling genotype-by-environment interaction and its genetic basis. Front. Physiol. 2013, 4:44.
    • (2013) Front. Physiol. , vol.4 , pp. 44
    • Malosetti, M.1
  • 55
    • 0036151660 scopus 로고    scopus 로고
    • Effects of phenotyping environment on identification of quantitative trait loci for rice root morphology under anaerobic conditions
    • Kamoshita A., et al. Effects of phenotyping environment on identification of quantitative trait loci for rice root morphology under anaerobic conditions. Crop Sci. 2002, 42:255-265.
    • (2002) Crop Sci. , vol.42 , pp. 255-265
    • Kamoshita, A.1
  • 56
    • 33746307230 scopus 로고    scopus 로고
    • Genomics-based approaches to improve drought tolerance of crops
    • Tuberosa R., Salvi S. Genomics-based approaches to improve drought tolerance of crops. Trends Plant Sci. 2006, 11:405-412.
    • (2006) Trends Plant Sci. , vol.11 , pp. 405-412
    • Tuberosa, R.1    Salvi, S.2
  • 57
    • 84883324571 scopus 로고    scopus 로고
    • Genotype by environment interaction of quantitative traits: a case study in Barley
    • Zhao F., Xu S. Genotype by environment interaction of quantitative traits: a case study in Barley. G3 2012, 2:779-788.
    • (2012) G3 , vol.2 , pp. 779-788
    • Zhao, F.1    Xu, S.2
  • 58
    • 84867299932 scopus 로고    scopus 로고
    • Phenotyping for drought tolerance of crops in the genomics era
    • Tuberosa R. Phenotyping for drought tolerance of crops in the genomics era. Front. Physiol. 2012, 10.3389/fphys.2012.00347.
    • (2012) Front. Physiol.
    • Tuberosa, R.1
  • 59
    • 66949130795 scopus 로고    scopus 로고
    • A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations
    • Ghandilyan A., et al. A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations. J. Exp. Bot. 2009, 60:1409-1425.
    • (2009) J. Exp. Bot. , vol.60 , pp. 1409-1425
    • Ghandilyan, A.1
  • 60
    • 34848907244 scopus 로고    scopus 로고
    • Seasonal and plant-density dependency for quantitative trait loci affecting flowering time in multiple populations of Arabidopsis thaliana
    • Botto J.F., Coluccio M.P. Seasonal and plant-density dependency for quantitative trait loci affecting flowering time in multiple populations of Arabidopsis thaliana. Plant Cell Environ. 2007, 30:1465-1479.
    • (2007) Plant Cell Environ. , vol.30 , pp. 1465-1479
    • Botto, J.F.1    Coluccio, M.P.2
  • 61
    • 84879551005 scopus 로고    scopus 로고
    • Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana
    • Fournier-Level A., et al. Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana. Mol. Ecol. 2013, 10.1111/mec.12285.
    • (2013) Mol. Ecol.
    • Fournier-Level, A.1
  • 62
    • 84869884324 scopus 로고    scopus 로고
    • MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs
    • Liu C.X., et al. MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs. BMC Genomics 2012, 13:661.
    • (2012) BMC Genomics , vol.13 , pp. 661
    • Liu, C.X.1
  • 63
    • 0034996057 scopus 로고    scopus 로고
    • Genotype-by-environment interaction and the fitness of plant hybrids in the wild
    • Campbell D.R., Waser N.M. Genotype-by-environment interaction and the fitness of plant hybrids in the wild. Evolution 2001, 55:669-676.
    • (2001) Evolution , vol.55 , pp. 669-676
    • Campbell, D.R.1    Waser, N.M.2
  • 64
    • 57249105426 scopus 로고    scopus 로고
    • Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, KAS-1×TSU-1
    • McKay J.K., et al. Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, KAS-1×TSU-1. Evolution 2008, 62:3014-3026.
    • (2008) Evolution , vol.62 , pp. 3014-3026
    • McKay, J.K.1
  • 65
    • 84885361865 scopus 로고    scopus 로고
    • Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome
    • Joseph B., et al. Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome. eLife 2013, 2:e00776.
    • (2013) eLife , vol.2
    • Joseph, B.1
  • 66
    • 20044371611 scopus 로고    scopus 로고
    • Altered photosynthetic performance of a natural Arabidopsis accession is associated with atrazine resistance
    • El-Lithy M.E., et al. Altered photosynthetic performance of a natural Arabidopsis accession is associated with atrazine resistance. J. Exp. Bot. 2005, 56:1625-1634.
    • (2005) J. Exp. Bot. , vol.56 , pp. 1625-1634
    • El-Lithy, M.E.1
  • 67
    • 0000059133 scopus 로고
    • The problem of environment and selection
    • Falconer D.S. The problem of environment and selection. Am. Nat. 1952, 86:293-298.
    • (1952) Am. Nat. , vol.86 , pp. 293-298
    • Falconer, D.S.1
  • 68
    • 1642524996 scopus 로고    scopus 로고
    • The analysis of quantitative trait loci in multi-environment trials using a multiplicative mixed model
    • Verbyla A.P., et al. The analysis of quantitative trait loci in multi-environment trials using a multiplicative mixed model. Aust. J. Agric. Res. 2003, 54:1395-1408.
    • (2003) Aust. J. Agric. Res. , vol.54 , pp. 1395-1408
    • Verbyla, A.P.1
  • 69
    • 16244419744 scopus 로고    scopus 로고
    • Statistical tests for QTL and QTL-by-environment effects in segregating populations derived from line crosses
    • Piepho H.P. Statistical tests for QTL and QTL-by-environment effects in segregating populations derived from line crosses. Theor. Appl. Genet. 2005, 110:561-566.
    • (2005) Theor. Appl. Genet. , vol.110 , pp. 561-566
    • Piepho, H.P.1
  • 70
    • 84856585221 scopus 로고    scopus 로고
    • Visualizing the genetic landscape of Arabidopsis seed performance
    • Joosen R.V.L., et al. Visualizing the genetic landscape of Arabidopsis seed performance. Plant Physiol. 2012, 158:570-589.
    • (2012) Plant Physiol. , vol.158 , pp. 570-589
    • Joosen, R.V.L.1
  • 71
    • 84865694973 scopus 로고    scopus 로고
    • Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences
    • Sabadin P.K., et al. Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences. Theor. Appl. Genet. 2012, 124:1389-1402.
    • (2012) Theor. Appl. Genet. , vol.124 , pp. 1389-1402
    • Sabadin, P.K.1
  • 72
    • 0141455094 scopus 로고    scopus 로고
    • Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana
    • Ungerer M.C., et al. Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana. Genetics 2003, 165:353-365.
    • (2003) Genetics , vol.165 , pp. 353-365
    • Ungerer, M.C.1
  • 73
    • 79953749569 scopus 로고    scopus 로고
    • Quantitative trait loci mapping of phenotypic plasticity and genotype-environment interactions in plant and insect performance
    • Tétard-Jones C., et al. Quantitative trait loci mapping of phenotypic plasticity and genotype-environment interactions in plant and insect performance. Philos. Trans. R. Soc. B 2011, 366:1368-1379.
    • (2011) Philos. Trans. R. Soc. B , vol.366 , pp. 1368-1379
    • Tétard-Jones, C.1
  • 74
    • 33749428520 scopus 로고    scopus 로고
    • Quantitative estimation of phenotypic plasticity: bridging the gap between the evolutionary concept and its ecological applications
    • Valladares F., et al. Quantitative estimation of phenotypic plasticity: bridging the gap between the evolutionary concept and its ecological applications. J. Ecol. 2006, 94:1103-1116.
    • (2006) J. Ecol. , vol.94 , pp. 1103-1116
    • Valladares, F.1
  • 75
    • 84888385871 scopus 로고    scopus 로고
    • Genome-wide association mapping of flowering time in Arabidopsis thaliana in nature: genetics for underlying components and reaction norms across two successive years
    • Brachi B., et al. Genome-wide association mapping of flowering time in Arabidopsis thaliana in nature: genetics for underlying components and reaction norms across two successive years. Acta Botanica Gallica 2013, 160:205-219.
    • (2013) Acta Botanica Gallica , vol.160 , pp. 205-219
    • Brachi, B.1
  • 76
    • 85164502327 scopus 로고    scopus 로고
    • Status and prospects of association mapping in plants
    • Zhu C., et al. Status and prospects of association mapping in plants. Plant Genome 2008, 1:5-20.
    • (2008) Plant Genome , vol.1 , pp. 5-20
    • Zhu, C.1
  • 77
    • 77951183639 scopus 로고    scopus 로고
    • Association genetics in crop improvement
    • Rafalski J.A. Association genetics in crop improvement. Curr. Opin. Plant Biol. 2010, 13:174-180.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 174-180
    • Rafalski, J.A.1
  • 78
    • 78650470891 scopus 로고    scopus 로고
    • Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana
    • Li Y., et al. Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:21199-21204.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 21199-21204
    • Li, Y.1
  • 79
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
    • Atwell S., et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 2010, 465:627-631.
    • (2010) Nature , vol.465 , pp. 627-631
    • Atwell, S.1
  • 80
    • 77949772292 scopus 로고    scopus 로고
    • Gene-environment-wide association studies: emerging approaches
    • Thomas D. Gene-environment-wide association studies: emerging approaches. Nat. Rev. Genet. 2010, 11:259-272.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 259-272
    • Thomas, D.1
  • 81
    • 84859261348 scopus 로고    scopus 로고
    • A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response
    • Filiault D.L., Maloof J.N. A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response. PLoS Genet. 2012, 8:e1002589.
    • (2012) PLoS Genet. , vol.8
    • Filiault, D.L.1    Maloof, J.N.2
  • 82
    • 84865696774 scopus 로고    scopus 로고
    • A mixed-model approach for genome-wide association studies of correlated traits in structured populations
    • Korte A., et al. A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nat. Genet. 2012, 44:1066-1071.
    • (2012) Nat. Genet. , vol.44 , pp. 1066-1071
    • Korte, A.1
  • 83
    • 33846466407 scopus 로고    scopus 로고
    • An Arabidopsis example of association mapping in structured samples
    • Zhao K., et al. An Arabidopsis example of association mapping in structured samples. PLoS Genet. 2007, 3:e4.
    • (2007) PLoS Genet. , vol.3
    • Zhao, K.1
  • 84
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu J., et al. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 2006, 38:203-208.
    • (2006) Nat. Genet. , vol.38 , pp. 203-208
    • Yu, J.1
  • 85
    • 77953264996 scopus 로고    scopus 로고
    • Linkage and association mapping of Arabidopsis thaliana flowering time in nature
    • Brachi B., et al. Linkage and association mapping of Arabidopsis thaliana flowering time in nature. PLoS Genet. 2010, 6:e1000940.
    • (2010) PLoS Genet. , vol.6
    • Brachi, B.1
  • 86
    • 57649121742 scopus 로고    scopus 로고
    • Next-generation genetics in plants
    • Nordborg M., Weigel D. Next-generation genetics in plants. Nature 2008, 456:720-723.
    • (2008) Nature , vol.456 , pp. 720-723
    • Nordborg, M.1    Weigel, D.2
  • 87
    • 84863343311 scopus 로고    scopus 로고
    • Combined linkage and association mapping reveals CYCD5;1 as a quantitative trait gene for endoreduplication in Arabidopsis
    • Sterken R., et al. Combined linkage and association mapping reveals CYCD5;1 as a quantitative trait gene for endoreduplication in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:4678-4683.
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. 4678-4683
    • Sterken, R.1
  • 88
    • 80052338881 scopus 로고    scopus 로고
    • Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana
    • Chan E.K.F., et al. Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana. PLoS Biol. 2011, 9:e1001125.
    • (2011) PLoS Biol. , vol.9
    • Chan, E.K.F.1
  • 89
    • 59149100506 scopus 로고    scopus 로고
    • System-wide molecular evidence for phenotypic buffering in Arabidopsis
    • Fu J., et al. System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nat. Genet. 2009, 41:166-167.
    • (2009) Nat. Genet. , vol.41 , pp. 166-167
    • Fu, J.1
  • 90
    • 84878448872 scopus 로고    scopus 로고
    • Identifying genotype-by-environment interactions in the metabolism of germinating Arabidopsis seeds using generalized genetical genomics
    • Joosen R.V., et al. Identifying genotype-by-environment interactions in the metabolism of germinating Arabidopsis seeds using generalized genetical genomics. Plant Physiol. 2013, 162:553-556.
    • (2013) Plant Physiol. , vol.162 , pp. 553-556
    • Joosen, R.V.1
  • 91
    • 0037322869 scopus 로고    scopus 로고
    • Combining quantitative trait loci analysis and an ecophysiological model to analyze the genetic variability of the responses of maize leaf growth to temperature and water deficit
    • Reymond M., et al. Combining quantitative trait loci analysis and an ecophysiological model to analyze the genetic variability of the responses of maize leaf growth to temperature and water deficit. Plant Physiol. 2003, 131:664-675.
    • (2003) Plant Physiol. , vol.131 , pp. 664-675
    • Reymond, M.1
  • 92
    • 27644585818 scopus 로고    scopus 로고
    • Statistical models for genotype by environment data: from conventional ANOVA models to eco-physiological QTL models
    • van Eeuwijk F.A., et al. Statistical models for genotype by environment data: from conventional ANOVA models to eco-physiological QTL models. Aust. J. Agric. Res. 2005, 56:883-894.
    • (2005) Aust. J. Agric. Res. , vol.56 , pp. 883-894
    • van Eeuwijk, F.A.1
  • 93
    • 71549115142 scopus 로고    scopus 로고
    • Simulating the yield impacts of organ-level quantitative trait loci associated with drought response in Maize: a "gene-to-phenotype" modeling approach
    • Chenu K., et al. Simulating the yield impacts of organ-level quantitative trait loci associated with drought response in Maize: a "gene-to-phenotype" modeling approach. Genetics 2009, 183:1507-1523.
    • (2009) Genetics , vol.183 , pp. 1507-1523
    • Chenu, K.1
  • 94
    • 4444268914 scopus 로고    scopus 로고
    • Role of crop physiology in predicting gene-to-phenotype relationships
    • Yin X., et al. Role of crop physiology in predicting gene-to-phenotype relationships. Trends Plant Sci. 2004, 9:426-432.
    • (2004) Trends Plant Sci. , vol.9 , pp. 426-432
    • Yin, X.1
  • 95
    • 60149093076 scopus 로고    scopus 로고
    • Effects of genetic perturbation on seasonal life history plasticity
    • Wilczek A.M., et al. Effects of genetic perturbation on seasonal life history plasticity. Science 2009, 323:930-934.
    • (2009) Science , vol.323 , pp. 930-934
    • Wilczek, A.M.1
  • 96
    • 84863393543 scopus 로고    scopus 로고
    • An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time
    • Chew Y.H., et al. An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time. New Phytol. 2012, 194:654-665.
    • (2012) New Phytol. , vol.194 , pp. 654-665
    • Chew, Y.H.1
  • 97
    • 84873268756 scopus 로고    scopus 로고
    • Among- and within-population variation in flowering time of Iberian Arabidopsis thaliana estimated in field and glasshouse conditions
    • Méndez-Vigo B., et al. Among- and within-population variation in flowering time of Iberian Arabidopsis thaliana estimated in field and glasshouse conditions. New Phytol. 2013, 197:1332-1343.
    • (2013) New Phytol. , vol.197 , pp. 1332-1343
    • Méndez-Vigo, B.1
  • 98
    • 84855580054 scopus 로고    scopus 로고
    • Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components
    • Mishra Y., et al. Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components. BMC Plant Biol. 2012, 12:6.
    • (2012) BMC Plant Biol. , vol.12 , pp. 6
    • Mishra, Y.1
  • 99
    • 84865861922 scopus 로고    scopus 로고
    • Metabolic profiling reveals metabolic shifts in Arabidopsis plants grown under different light conditions
    • Jänkänpää H.J., et al. Metabolic profiling reveals metabolic shifts in Arabidopsis plants grown under different light conditions. Plant Cell Environ. 2012, 35:1824-1836.
    • (2012) Plant Cell Environ. , vol.35 , pp. 1824-1836
    • Jänkänpää, H.J.1
  • 100
    • 84871679790 scopus 로고    scopus 로고
    • The evolutionary consequences of indirect effects
    • Walsh M.R. The evolutionary consequences of indirect effects. Trends Ecol. Evol. 2013, 28:23-29.
    • (2013) Trends Ecol. Evol. , vol.28 , pp. 23-29
    • Walsh, M.R.1
  • 101
    • 79953750142 scopus 로고    scopus 로고
    • Functional genetics of intraspecific ecological interactions in Arabidopsis thaliana
    • Wolf J.B., et al. Functional genetics of intraspecific ecological interactions in Arabidopsis thaliana. Philos. Trans. R. Soc. Biol. Sci. 2011, 366:1358-1367.
    • (2011) Philos. Trans. R. Soc. Biol. Sci. , vol.366 , pp. 1358-1367
    • Wolf, J.B.1
  • 102
    • 0031938715 scopus 로고    scopus 로고
    • Evolutionary consequences of indirect genetic effects
    • Wolf J.B., et al. Evolutionary consequences of indirect genetic effects. Trends Ecol. Evol. 1998, 13:64-69.
    • (1998) Trends Ecol. Evol. , vol.13 , pp. 64-69
    • Wolf, J.B.1
  • 103
    • 0026082395 scopus 로고
    • Indirect effects in community ecology: their definition, study and importance
    • Strauss S.Y. Indirect effects in community ecology: their definition, study and importance. Trends Ecol. Evol. 1991, 6:206-210.
    • (1991) Trends Ecol. Evol. , vol.6 , pp. 206-210
    • Strauss, S.Y.1
  • 104
    • 0034844328 scopus 로고    scopus 로고
    • On indirect genetic effects in structured populations
    • Agrawal A.F., et al. On indirect genetic effects in structured populations. Am. Nat. 2001, 158:308-323.
    • (2001) Am. Nat. , vol.158 , pp. 308-323
    • Agrawal, A.F.1
  • 105
    • 84860494028 scopus 로고    scopus 로고
    • Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range
    • Agren J., Schemske D.W. Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range. New Phytol. 2012, 194:1112-1122.
    • (2012) New Phytol. , vol.194 , pp. 1112-1122
    • Agren, J.1    Schemske, D.W.2
  • 106
    • 77955920645 scopus 로고    scopus 로고
    • Statistical analyses of genotype by environment data
    • Springer US, M.J. Carena (Ed.)
    • Romagosa I., et al. Statistical analyses of genotype by environment data. Cereals 2009, 291-331. Springer US. M.J. Carena (Ed.).
    • (2009) Cereals , pp. 291-331
    • Romagosa, I.1
  • 107
    • 0029022716 scopus 로고
    • Multiple trait analysis of genetic mapping for quantitative trait loci
    • Jiang C., Zeng Z.B. Multiple trait analysis of genetic mapping for quantitative trait loci. Genetics 1995, 140:1111-1127.
    • (1995) Genetics , vol.140 , pp. 1111-1127
    • Jiang, C.1    Zeng, Z.B.2
  • 108
    • 78951494468 scopus 로고    scopus 로고
    • Mapping environment-specific quantitative trait loci
    • Chen X., et al. Mapping environment-specific quantitative trait loci. Genetics 2010, 186:1053-1066.
    • (2010) Genetics , vol.186 , pp. 1053-1066
    • Chen, X.1
  • 109
    • 0033790231 scopus 로고    scopus 로고
    • Multitrait least squares for quantitative trait loci detection
    • Knott S.A., Haley C.S. Multitrait least squares for quantitative trait loci detection. Genetics 2000, 156:899-911.
    • (2000) Genetics , vol.156 , pp. 899-911
    • Knott, S.A.1    Haley, C.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.