-
1
-
-
84861900573
-
Isolation and characterization of transcription fidelity mutants
-
Strathern, J.N., Jin, D.J., Court, D.L. and Kashlev, M. (2012) Isolation and characterization of transcription fidelity mutants. Biochim. Biophys. Acta., 1819, 694-699.
-
(2012)
Biochim. Biophys. Acta.
, vol.1819
, pp. 694-699
-
-
Strathern, J.N.1
Jin, D.J.2
Court, D.L.3
Kashlev, M.4
-
2
-
-
0032113494
-
Crucial role of the RNA:DNA hybrid in the processivity of transcription
-
Sidorenkov, I., Komissarova, N. and Kashlev, M. (1998) Crucial role of the RNA:DNA hybrid in the processivity of transcription. Mol. Cell, 2, 55-64.
-
(1998)
Mol. Cell
, vol.2
, pp. 55-64
-
-
Sidorenkov, I.1
Komissarova, N.2
Kashlev, M.3
-
3
-
-
0034051171
-
The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
-
Kireeva, M.L., Komissarova, N., Waugh, D.S. and Kashlev, M. (2000) The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex. J. Biol. Chem., 275, 6530-6536.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 6530-6536
-
-
Kireeva, M.L.1
Komissarova, N.2
Waugh, D.S.3
Kashlev, M.4
-
4
-
-
0036863659
-
Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination
-
Komissarova, N., Becker, J., Solter, S., Kireeva, M. and Kashlev, M. (2002) Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination. Mol. Cell, 10, 1151-1162.
-
(2002)
Mol. Cell
, vol.10
, pp. 1151-1162
-
-
Komissarova, N.1
Becker, J.2
Solter, S.3
Kireeva, M.4
Kashlev, M.5
-
5
-
-
23744491110
-
Transcriptional slippage in bacteria: Distribution in sequenced genomes and utilization in IS element gene expression
-
Baranov, P.V., Hammer, A.W., Zhou, J., Gesteland, R.F. and Atkins, J.F. (2005) Transcriptional slippage in bacteria: Distribution in sequenced genomes and utilization in IS element gene expression. Genome Biol., 6, R25.
-
(2005)
Genome Biol.
, vol.6
-
-
Baranov, P.V.1
Hammer, A.W.2
Zhou, J.3
Gesteland, R.F.4
Atkins, J.F.5
-
6
-
-
84879628309
-
Heritable change caused by transient transcription errors
-
Gordon, A.J., Satory, D., Halliday, J.A. and Herman, C. (2013) Heritable change caused by transient transcription errors. PLoS Genet., 9, e1003595.
-
(2013)
PLoS Genet.
, vol.9
-
-
Gordon, A.J.1
Satory, D.2
Halliday, J.A.3
Herman, C.4
-
7
-
-
0025329221
-
Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli
-
Wagner, L.A., Weiss, R.B., Driscoll, R., Dunn, D.S. and Gesteland, R.F. (1990) Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli. Nucleic Acids Res., 18, 3529-3535.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3529-3535
-
-
Wagner, L.A.1
Weiss, R.B.2
Driscoll, R.3
Dunn, D.S.4
Gesteland, R.F.5
-
8
-
-
84873819348
-
Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli
-
Zhou, Y.N., Lubkowska, L., Hui, M., Court, C., Chen, S., Court, D.L., Strathern, J., Jin, D.J. and Kashlev, M. (2013) Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli. J. Biol. Chem., 288, 2700-2710.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 2700-2710
-
-
Zhou, Y.N.1
Lubkowska, L.2
Hui, M.3
Court, C.4
Chen, S.5
Court, D.L.6
Strathern, J.7
Jin, D.J.8
Kashlev, M.9
-
9
-
-
0027326224
-
Termination and slippage by bacteriophage T7 RNA polymerase
-
Macdonald, L.E., Zhou, Y. and McAllister, W.T. (1993) Termination and slippage by bacteriophage T7 RNA polymerase. J. Mol. Biol., 232, 1030-1047.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 1030-1047
-
-
Macdonald, L.E.1
Zhou, Y.2
McAllister, W.T.3
-
10
-
-
79954592392
-
Transcript slippage and recoding
-
In: Atkins, J. F., Gesteland, R. F. and Bujnicki, J. M. (eds)., 24th edn. Springer, New York, NY
-
Anikin, M., Molodtsov, V., Temiakov, D. and McAllister, W.T. (2010) Transcript slippage and recoding. In: Atkins, J. F., Gesteland, R. F. and Bujnicki, J. M. (eds). Recoding: Expansion of Decoding Rules Enriches Gene Expression, 24th edn. Springer, New York, NY, pp. 409-432.
-
(2010)
Recoding: Expansion of Decoding Rules Enriches Gene Expression
, pp. 409-432
-
-
Anikin, M.1
Molodtsov, V.2
Temiakov, D.3
McAllister, W.T.4
-
11
-
-
33344468695
-
Recoding in bacteriophages and bacterial IS elements
-
DOI 10.1016/j.tig.2006.01.005, PII S0168952506000242
-
Baranov, P.V., Fayet, O., Hendrix, R.W. and Atkins, J.F. (2006) Recoding in bacteriophages and bacterial IS elements. Trends Genet., 22, 174-181. (Pubitemid 43290021
-
(2006)
Trends in Genetics
, vol.22
, Issue.3
, pp. 174-181
-
-
Baranov, P.V.1
Fayet, O.2
Hendrix, R.W.3
Atkins, J.F.4
-
12
-
-
79954601990
-
Regulation of gene expression by reiterative transcription
-
Turnbough, C.L. Jr (2011) Regulation of gene expression by reiterative transcription. Curr. Opin. Microbiol., 14, 142-147.
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 142-147
-
-
Turnbough Jr., C.L.1
-
13
-
-
0034652208
-
Nonlinearity in genetic decoding: Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting
-
Larsen, B., Wills, N.M., Nelson, C., Atkins, J.F. and Gesteland, R.F. (2000) Nonlinearity in genetic decoding: Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting. Proc. Natl. Acad. Sci. U.S.A., 97, 1683-1688.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 1683-1688
-
-
Larsen, B.1
Wills, N.M.2
Nelson, C.3
Atkins, J.F.4
Gesteland, R.F.5
-
14
-
-
70349333227
-
The evolutionary consequences of erroneous protein synthesis
-
Drummond, D.A. and Wilke, C.O. (2009) The evolutionary consequences of erroneous protein synthesis. Nat. Rev. Genet., 10, 715-724.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 715-724
-
-
Drummond, D.A.1
Wilke, C.O.2
-
15
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
DOI 10.1038/nature05932, PII NATURE05932
-
Vassylyev, D.G., Vassylyeva, M.N., Perederina, A., Tahirov, T.H. and Artsimovitch, I. (2007) Structural basis for transcription elongation by bacterial RNA polymerase. Nature, 448, 157-162. (Pubitemid 47067370
-
(2007)
Nature
, vol.448
, Issue.7150
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
16
-
-
3843142938
-
Translation repression by an RNA polymerase elongation complex
-
Wilson, H.R., Zhou, J.G., Yu, D. and Court, D.L. (2004) Translation repression by an RNA polymerase elongation complex. Mol. Microbiol., 53, 821-828.
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 821-828
-
-
Wilson, H.R.1
Zhou, J.G.2
Yu, D.3
Court, D.L.4
-
17
-
-
0023448995
-
Isolation of Escherichia coli rpoB mutants resistant to killing by lambda cII protein and altered in pyrE gene attenuation
-
Hammer, K., Jensen, K.F., Poulsen, P., Oppenheim, A.B. and Gottesman, M. (1987) Isolation of Escherichia coli rpoB mutants resistant to killing by lambda cII protein and altered in pyrE gene attenuation. J. Bacteriol., 169, 5289-5297.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 5289-5297
-
-
Hammer, K.1
Jensen, K.F.2
Poulsen, P.3
Oppenheim, A.B.4
Gottesman, M.5
-
18
-
-
0024237544
-
Effects of rifampicin resistant rpoB mutations on antitermination and interaction with nusA in Escherichia coli
-
Jin, D.J., Cashel, M., Friedman, D.I., Nakamura, Y., Walter, W.A. and Gross, C.A. (1988) Effects of rifampicin resistant rpoB mutations on antitermination and interaction with nusA in Escherichia coli. J. Mol. Biol., 204, 247-261.
-
(1988)
J. Mol. Biol.
, vol.204
, pp. 247-261
-
-
Jin, D.J.1
Cashel, M.2
Friedman, D.I.3
Nakamura, Y.4
Walter, W.A.5
Gross, C.A.6
-
19
-
-
53849108160
-
RNA polymerase elongation factors
-
Roberts, J.W., Shankar, S. and Filter, J.J. (2008) RNA polymerase elongation factors. Annu. Rev. Microbiol., 62, 211-233.
-
(2008)
Annu. Rev. Microbiol.
, vol.62
, pp. 211-233
-
-
Roberts, J.W.1
Shankar, S.2
Filter, J.J.3
-
20
-
-
0026703203
-
Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage lambda
-
Mason, S.W., Li, J. and Greenblatt, J. (1992) Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage lambda. J. Biol. Chem., 267, 19418-19426.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 19418-19426
-
-
Mason, S.W.1
Li, J.2
Greenblatt, J.3
-
21
-
-
0027321585
-
Control of transcription termination by RNA-binding proteins
-
Das, A. (1993) Control of transcription termination by RNA-binding proteins. Annu. Rev. Biochem., 62, 893-930.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 893-930
-
-
Das, A.1
-
22
-
-
0348087031
-
HIV tat its targets and the control of viral gene expression
-
Brigati, C., Giacca, M., Noonan, D.M. and Albini, A. (2003) HIV Tat, its TARgets and the control of viral gene expression. FEMS Microbiol. Lett., 220, 57-65.
-
(2003)
FEMS Microbiol. Lett.
, vol.220
, pp. 57-65
-
-
Brigati, C.1
Giacca, M.2
Noonan, D.M.3
Albini, A.4
-
23
-
-
0021748170
-
Antitermination of E coli rRNA transcription is caused by a control region segment containing lambda nut-like sequences
-
Li, S.C., Squires, C.L. and Squires, C. (1984) Antitermination of E. coli rRNA transcription is caused by a control region segment containing lambda nut-like sequences. Cell, 38, 851-860. (Pubitemid 15176114
-
(1984)
Cell
, vol.38
, Issue.3
, pp. 851-860
-
-
Li, S.C.1
Squires, C.L.2
Squires, C.3
-
24
-
-
0030030852
-
Bacteriophage lambda N protein alone can induce transcription antitermination in vitro
-
Rees, W.A., Weitzel, S.E., Yager, T.D., Das, A. and von Hippel, P.H. (1996) Bacteriophage lambda N protein alone can induce transcription antitermination in vitro. Proc. Natl. Acad. Sci. U.S.A., 93, 342-346.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 342-346
-
-
Rees, W.A.1
Weitzel, S.E.2
Yager, T.D.3
Das, A.4
Von Hippel, P.H.5
-
25
-
-
0023988798
-
NusA protein is necessary and sufficient in vitro for phage lambda N gene product to suppress a rho-independent terminator placed downstream of nutL
-
Whalen, W., Ghosh, B. and Das, A. (1988) NusA protein is necessary and sufficient in vitro for phage lambda N gene product to suppress a rho-independent terminator placed downstream of nutL. Proc. Natl. Acad. Sci. U.S.A., 85, 2494-2498.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 2494-2498
-
-
Whalen, W.1
Ghosh, B.2
Das, A.3
-
26
-
-
0028064962
-
Control of transcription processivity in phage lambda: Nus factors strengthen the termination-resistant state of RNA polymerase induced by N antiterminator
-
DeVito, J. and Das, A. (1994) Control of transcription processivity in phage lambda: Nus factors strengthen the termination-resistant state of RNA polymerase induced by N antiterminator. Proc. Natl. Acad. Sci. U.S.A., 91, 8660-8664.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 8660-8664
-
-
DeVito, J.1
Das, A.2
-
27
-
-
0347536265
-
Analysis of the intrinsic transcription termination mechanism and its control
-
DOI 10.1016/S0076-6879(03)71028-3
-
Nudler, E. and Gusarov, I. (2003) Analysis of the intrinsic transcription termination mechanism and its control. Methods Enzymol., 371, 369-382. (Pubitemid 37542744
-
(2003)
Methods in Enzymology
, vol.371
, pp. 369-382
-
-
Nudler, E.1
Gusarov, I.2
-
28
-
-
0030930852
-
Translational repression by a transcriptional elongation factor
-
Wilson, H.R., Kameyama, L., Zhou, J.G., Guarneros, G. and Court, D.L. (1997) Translational repression by a transcriptional elongation factor. Genes Dev., 11, 2204-2213. (Pubitemid 27387971
-
(1997)
Genes and Development
, vol.11
, Issue.17
, pp. 2204-2213
-
-
Wilson, H.R.1
Kameyama, L.2
Zhou, J.-G.3
Guarneros, G.4
Court, D.L.5
-
29
-
-
0021714276
-
A pSC101-derived plasmid which shows no sequence homology to other commonly used cloning vectors
-
DOI 10.1016/0378-1119(84)90207-5
-
Churchward, G., Belin, D. and Nagamine, Y. (1984) A pSC101-derived plasmid which shows no sequence homology to other commonly used cloning vectors. Gene, 31, 165-171. (Pubitemid 15223957
-
(1984)
Gene
, vol.31
, Issue.1-3
, pp. 165-171
-
-
Churchward, G.1
Belin, D.2
Nagamine, Y.3
-
31
-
-
67049100283
-
Mechanism of sequence-specific pausing of bacterial RNA polymerase
-
Kireeva, M.L. and Kashlev, M. (2009) Mechanism of sequence-specific pausing of bacterial RNA polymerase. Proc. Natl. Acad. Sci. U.S.A., 106, 8900-8905.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 8900-8905
-
-
Kireeva, M.L.1
Kashlev, M.2
-
32
-
-
0030036477
-
The yeast transcription terminator for RNA polymerase I is designed to prevent polymerase slippage
-
Jeong, S.W., Lang, W.H. and Reeder, R.H. (1996) The yeast transcription terminator for RNA polymerase I is designed to prevent polymerase slippage. J. Biol. Chem., 271, 16104-16110.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 16104-16110
-
-
Jeong, S.W.1
Lang, W.H.2
Reeder, R.H.3
-
33
-
-
0036682612
-
The global regulator RNase III modulates translation repression by the transcription elongation factor N
-
DOI 10.1093/emboj/cdf395
-
Wilson, H.R., Yu, D., Peters, H.K. III, Zhou, J.G. and Court, D.L. (2002) The global regulator RNase III modulates translation repression by the transcription elongation factor N. EMBO J., 21, 4154-4161. (Pubitemid 34857447
-
(2002)
EMBO Journal
, vol.21
, Issue.15
, pp. 4154-4161
-
-
Wilson, H.R.1
Yu, D.2
Peters III, H.K.3
Zhou, J.-G.4
Court, D.L.5
-
34
-
-
66149094661
-
Dynamics and stability of individual base pairs in two homologous RNA-DNA hybrids
-
Huang, Y., Chen, C. and Russu, I.M. (2009) Dynamics and stability of individual base pairs in two homologous RNA-DNA hybrids. Biochemistry, 48, 3988-3997.
-
(2009)
Biochemistry
, vol.48
, pp. 3988-3997
-
-
Huang, Y.1
Chen, C.2
Russu, I.M.3
-
35
-
-
23944518352
-
Escherichia coli RNA polymerase mutations located near the upstream edge of an RNA:DNA hybrid and the beginning of the RNA-exit channel are defective for transcription antitermination by the N protein from lambdoid phage H-19B
-
Cheeran, A., Babu Suganthan, R., Swapna, G., Bandey, I., Achary, M.S., Nagarajaram, H.A. and Sen, R. (2005) Escherichia coli RNA polymerase mutations located near the upstream edge of an RNA:DNA hybrid and the beginning of the RNA-exit channel are defective for transcription antitermination by the N protein from lambdoid phage H-19B. J. Mol. Biol., 352, 28-43.
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 28-43
-
-
Cheeran, A.1
Babu Suganthan, R.2
Swapna, G.3
Bandey, I.4
Achary, M.S.5
Nagarajaram, H.A.6
Sen, R.7
-
36
-
-
20444373710
-
The structure of E coli beta-galactosidase
-
Matthews, B.W. (2005) The structure of E. coli beta-galactosidase. C. R. Biol., 328, 549-556.
-
(2005)
C. R. Biol.
, vol.328
, pp. 549-556
-
-
Matthews, B.W.1
-
37
-
-
0034687124
-
Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes
-
Sugimoto, N., Nakano, M. and Nakano, S. (2000) Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes. Biochemistry, 39, 11270-11281.
-
(2000)
Biochemistry
, vol.39
, pp. 11270-11281
-
-
Sugimoto, N.1
Nakano, M.2
Nakano, S.3
-
38
-
-
80055079975
-
Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis
-
Wang, W., Hellinga, H.W. and Beese, L.S. (2011) Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc. Natl. Acad. Sci. U.S.A., 108, 17644-17648.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 17644-17648
-
-
Wang, W.1
Hellinga, H.W.2
Beese, L.S.3
-
39
-
-
0024434420
-
Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif
-
DOI 10.1016/0092-8674(89)90882-9
-
Lazinski, D., Grzadzielska, E. and Das, A. (1989) Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif. Cell, 59, 207-218. (Pubitemid 19248570
-
(1989)
Cell
, vol.59
, Issue.1
, pp. 207-218
-
-
Lazinski, D.1
Gradzielska, E.2
Das, A.3
-
40
-
-
0030687932
-
Terminating transcription in eukaryotes: Lessons learned from RNA polymerase I
-
Reeder, R.H. and Lang, W.H. (1997) Terminating transcription in eukaryotes: Lessons learned from RNA polymerase I. Trends Biochem. Sci., 22, 473-477.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 473-477
-
-
Reeder, R.H.1
Lang, W.H.2
|