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Volumn 9, Issue 5, 2014, Pages

Evaluation of reference genes for gene expression analysis using quantitative RT-PCR in Azospirillum brasilense

Author keywords

[No Author keywords available]

Indexed keywords

RECA PROTEIN; RECF PROTEIN; RNA 16S; BACTERIOCIN; DNA TOPOISOMERASE (ATP HYDROLYSING); GLYCINECIN A; MESSENGER RNA; PRIMER DNA;

EID: 84901359861     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0098162     Document Type: Article
Times cited : (57)

References (34)
  • 1
    • 0033818519 scopus 로고    scopus 로고
    • Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: Genetic, biochemical and ecological aspects
    • Steenhoudt O, Vanderleyden(2000) Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol Review 24: 487-506.
    • (2000) FEMS Microbiol Review , vol.24 , pp. 487-506
    • Steenhoudt, O.1    Vanderleyden2
  • 2
    • 27444437888 scopus 로고    scopus 로고
    • Inoculation with the plant-growth-promoting rhizobacterium Azospirillum brasilense causes little disturbance in the rhizosphere and rhizoplane of maize (Zea mays)
    • DOI 10.1007/s00248-004-0148-x
    • Herschkovitz Y, Lerner A, Davidov Y, Rothballer M, Hartmann A, et al. (2005) Inoculation with the Plant-Growth-Promoting Rhizobacterium Azospirillum brasilense Causes Little Disturbance in the Rhizosphere and Rhizoplane of Maize (Zea mays). Microbial Ecology 50: 277-288. (Pubitemid 41712626)
    • (2005) Microbial Ecology , vol.50 , Issue.2 , pp. 277-288
    • Herschkovitz, Y.1    Lerner, A.2    Davidov, Y.3    Rothballer, M.4    Hartmann, A.5    Okon, Y.6    Jurkevitch, E.7
  • 3
    • 0036276493 scopus 로고    scopus 로고
    • Protection of tomato seedlings against infection by Pseudomonas syringae pv. tomato by using the plant growth-promoting bacterium Azospirillum brasilense
    • DOI 10.1128/AEM.68.6.2637-2643.2002
    • Bashan Y, De-Bashan L (2002) Protection of tomato seedlings against infection by Pseudomonas syringae pv. Tomato by using the plant growth promoting bacterium Azospirillum brasilense. Applied and Environmental Microbiology 68: 2637-2643. (Pubitemid 34601980)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.6 , pp. 2637-2643
    • Bashan, Y.1    De-Bashan, L.E.2
  • 4
    • 0021796438 scopus 로고
    • Flocculation in Azospirillum brasilense and Azospirillum lipoferum: Exopolysaccharides and cyst formation
    • Sadasivan L, Neyra CA (1985) Flocculation in Azospirillum brasilense and Azospirillum lipoferum: exopolysaccharides and cyst formation. J Bacteriol 163: 716-723. (Pubitemid 15008800)
    • (1985) Journal of Bacteriology , vol.163 , Issue.2 , pp. 716-723
    • Sadasivan, L.1    Neyra, C.A.2
  • 5
    • 0023179708 scopus 로고
    • Cyst production and brown pigment formation in aging cultures of Azospirillum brasilense ATCC 29145
    • Sadasivan L, Neyra CA (1987) Cyst production and brown pigment formation in aging cultures of Azospirillum brasilense ATCC 29145. J Bacteriol 169: 1670-1677. (Pubitemid 17063499)
    • (1987) Journal of Bacteriology , vol.169 , Issue.4 , pp. 1670-1677
    • Sadasivan, L.1    Neyra, C.A.2
  • 6
    • 0032031488 scopus 로고    scopus 로고
    • A transcriptional regulator of the LuxR-UhpA family, FlcA, controls flocculation and wheat root surface colonization by Azospirillum brasilense Sp7
    • Pereg-Gerk L, Paquelin A, Gounon P, Kennedy I, Elmerich C (1998) A transcriptional regulator of the LuxR-UhpA family, FlcA, controls flocculation and wheat root surface colonisation by Azospirillum brasilense Sp7. Molecular Plant-Microbe Interactions 11: 177-187. (Pubitemid 28091694)
    • (1998) Molecular Plant-Microbe Interactions , vol.11 , Issue.3 , pp. 177-187
    • Pereg-Gerk, L.1    Paquelin, A.2    Gounon, P.3    Kennedy, I.R.4    Elmerich, C.5
  • 7
    • 3142609222 scopus 로고    scopus 로고
    • Expression of flcA, a gene regulating differentation and plant interaction in Azospirillum
    • Pereg-Gerk L (2004) Expression of flcA, a gene regulating differentation and plant interaction in Azospirillum. Soil Biology and Biochemistry 36: 1245-1252.
    • (2004) Soil Biology and Biochemistry , vol.36 , pp. 1245-1252
    • Pereg-Gerk, L.1
  • 8
    • 0034016243 scopus 로고    scopus 로고
    • Mutants with enhanced nitrogenase activity in hydroponic Azospirillum brasilense-wheat associations
    • DOI 10.1128/AEM.66.5.2175-2184.2000
    • Pereg-Gerk L, Gilchrist K, Kennedy I (2000) Mutants with enhanced nitrogenase activity in hydroponic Azospirillum brasilense-wheat associations. Applied and Environmental Microbiology 66: 2175-2184. (Pubitemid 30253748)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.5 , pp. 2175-2184
    • Gerk, L.P.1    Gilchrist, K.2    Kennedy, I.R.3
  • 10
    • 84885913914 scopus 로고    scopus 로고
    • Expression of SAP5 and SAP9 in Candida albicans biofilms: Comparison of bloodstream isolates with isolates from other sources
    • Joo M, Shin J, Jang H, Song E, Kee S, et al. (2013) Expression of SAP5 and SAP9 in Candida albicans biofilms: comparison of bloodstream isolates with isolates from other sources. Medical Mycology 51: 892-896.
    • (2013) Medical Mycology , vol.51 , pp. 892-896
    • Joo, M.1    Shin, J.2    Jang, H.3    Song, E.4    Kee, S.5
  • 11
    • 84881478486 scopus 로고    scopus 로고
    • FurA influences heterocyst differentiation in Anabaena sp. PCC 7120
    • Gonzalez A, Valladares A, Peleato M, Fillat M (2013) FurA influences heterocyst differentiation in Anabaena sp. PCC 7120. FEBS Letters 587: 2682-2690.
    • (2013) FEBS Letters , vol.587 , pp. 2682-2690
    • Gonzalez, A.1    Valladares, A.2    Peleato, M.3    Fillat, M.4
  • 12
    • 32144437945 scopus 로고    scopus 로고
    • Evaluation of methods for oligonucleotide array via quantitative real-time PCR
    • Qin L, Beyer R, Hudson F, Linford N, Morris D, et al. (2006) Evaluation of methods for oligonucleotide array via quantitative real-time PCR. BMC Bioinformatics 7.
    • (2006) BMC Bioinformatics , vol.7
    • Qin, L.1    Beyer, R.2    Hudson, F.3    Linford, N.4    Morris, D.5
  • 13
    • 25444486426 scopus 로고    scopus 로고
    • Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real time RT-PCR - How well do they correlate?
    • Dallas P, Gottardo N, Firth M, Beesley A, Hoffman K, et al. (2005) Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real time RT-PCR - how well do they correlate? BMC Genomics 6.
    • (2005) BMC Genomics , vol.6
    • Dallas, P.1    Gottardo, N.2    Firth, M.3    Beesley, A.4    Hoffman, K.5
  • 17
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: research0034.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5
  • 18
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • DOI 10.1038/sj.gene.6364190
    • Huggett J, Dheda K, Bustin S, Zumla A (2005) Real-time RT-PCR normalisation; strategies and considerations. Genes Immun 6: 279-284. (Pubitemid 40903399)
    • (2005) Genes and Immunity , vol.6 , Issue.4 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 19
    • 0033836029 scopus 로고    scopus 로고
    • Control selection for RNA quantitation
    • Suzuki T, Higgins P, Crawford D (2000) Control selection for RNA quantitation. Biotechniques 29: 332-337. (Pubitemid 30658285)
    • (2000) BioTechniques , vol.29 , Issue.2 , pp. 332-337
    • Suzuki, T.1    Higgins, P.J.2    Crawford, D.R.3
  • 20
    • 0035212161 scopus 로고    scopus 로고
    • Quantification of expression of Staphylococcus epidermidis housekeeping genes with Taqman quantitative PCR during in vitro growth and under different conditions
    • DOI 10.1128/JB.183.24.7094-7101.2001
    • Vandecasteele S, Peetermans W, Merckx R, Van Eldere J (2001) Quantification of expression of Staphylococcus epidermidis housekeeping genes with Taqman quantitative PCR during in vitro growth and under different conditions. Journal of Bacteriology 183: 7094-7101. (Pubitemid 33121842)
    • (2001) Journal of Bacteriology , vol.183 , Issue.24 , pp. 7094-7101
    • Vandecasteele, S.J.1    Peetermans, W.E.2    Merckx, R.3    Van Eldere, J.4
  • 21
    • 0041696956 scopus 로고    scopus 로고
    • Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR
    • DOI 10.1046/j.1462-2920.2003.00452.x
    • Neretin L, Schippers A, Pernthaler A, Hamann K, Amann R, et al. (2003) Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR. Environmental Microbiology 5: 660-671. (Pubitemid 36953527)
    • (2003) Environmental Microbiology , vol.5 , Issue.8 , pp. 660-671
    • Neretin, L.N.1    Schippers, A.2    Pernthaler, A.3    Hamann, K.4    Amann, R.5    Jorgensen, B.B.6
  • 22
    • 0034943741 scopus 로고    scopus 로고
    • Real-time PCR used to measure stress-induced changes in the expression of the genes of the alginate pathway of Pseudomonas aeruginosa
    • DOI 10.1046/j.1365-2672.2001.01339.x
    • Edwards K, Saunders N (2001) Real-time PCR used to measure stress-induced changes in the expression of the genes of the alginate pathway of Pseudomonas aeruginosa . J Appl Microbiol 91: 29-37. (Pubitemid 32623347)
    • (2001) Journal of Applied Microbiology , vol.91 , Issue.1 , pp. 29-37
    • Edwards, K.J.1    Saunders, N.A.2
  • 23
    • 0034897153 scopus 로고    scopus 로고
    • Changes in rRNA levels during stress invalidates results from mRNA blotting: Flourescence in situ rRNA hybridization permits renormalization for estimation of cellular mRNA levels
    • Hansen M, Nielsen A, Molin S, Hammer K, Kilstrup M (2001) Changes in rRNA levels during stress invalidates results from mRNA blotting: Flourescence in situ rRNA hybridization permits renormalization for estimation of cellular mRNA levels. J Bacterioogy 183.
    • (2001) J Bacterioogy , vol.183
    • Hansen, M.1    Nielsen, A.2    Molin, S.3    Hammer, K.4    Kilstrup, M.5
  • 24
    • 0031829592 scopus 로고    scopus 로고
    • Endophytic and surface colonization of wheat roots (Triticum aestivum) by different Azospirillum brasilense strains studied with strain-specific monoclonal antibodies
    • Schloter M, Hartmann A (1998) Endophytic and surface colonization of wheat roots (Triticum aestivum) by different Azospirillum brasilense strains studied with strain-specific monoclonal antibodies. Symbiosis 25: 159-179. (Pubitemid 28382747)
    • (1998) Symbiosis , vol.25 , Issue.1-3 , pp. 159-179
    • Schloter, M.1    Hartmann, A.2
  • 25
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • DOI 10.1023/B:BILE.0000019559.84305.47
    • Pfaffl M, Tichopad A, Prgomet C, Neuvians T (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnology Letters 26: 509-515. (Pubitemid 38448421)
    • (2004) Biotechnology Letters , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 26
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Andersen CL, Jensen JL, Orntoft TF (2004) Normalization of Real-Time Quantitative Reverse Transcription-PCR Data: A Model-Based Variance Estimation Approach to Identify Genes Suited for Normalization, Applied to Bladder and Colon Cancer Data Sets. Cancer Research 64: 5245-5250. (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 27
    • 0029040821 scopus 로고
    • A mutant of Azospirillum brasilense Sp7 impaired in flocculation with a modified colonization pattern and superior nitrogen fixation in association with wheat
    • Katupitiya S, Millet J, Vesk M, Viccars L, Zeman A, et al. (1995) A mutant of Azospirillum brasilense Sp7 impaired in flocculation with a modified colonization pattern and superior nitrogen fixation in association with wheat. Applied and Environmental Microbiology 61: 1987-1995.
    • (1995) Applied and Environmental Microbiology , vol.61 , pp. 1987-1995
    • Katupitiya, S.1    Millet, J.2    Vesk, M.3    Viccars, L.4    Zeman, A.5
  • 28
    • 29144495882 scopus 로고    scopus 로고
    • PCR inhibition by reverse transcriptase leads to an overestimation of amplification efficiency
    • Suslov, O; Steindler, D.A(2005) PCR inhibition by reverse transcriptase leads to an overestimation of amplification efficiency. Nucleic Acids Research 33 (20): e181
    • (2005) Nucleic Acids Research , vol.33 , Issue.20
    • Suslov, O.1    Steindler, D.A.2
  • 29
    • 44849085483 scopus 로고    scopus 로고
    • Exercise induced stress in horses: Selection of the most stable reference genes for quantitative RT-PCR normalization
    • Cappelli K, Felicetti M, Capomaccio S, Spinsanti G, Silvestrelli M, et al. (2008) Exercise induced stress in horses: Selection of the most stable reference genes for quantitative RT-PCR normalization. BMC Molecular Biology 9:49-56
    • (2008) BMC Molecular Biology , vol.9 , pp. 49-56
    • Cappelli, K.1    Felicetti, M.2    Capomaccio, S.3    Spinsanti, G.4    Silvestrelli, M.5
  • 30
    • 79955933565 scopus 로고    scopus 로고
    • Selection and validation of reference genes for gene expression studies by reverse transcription quantitative PCR in Xanthomonas citri subsp. citri during infection of Citrus sinensis
    • Jacob T, Laia M, Ferro J, Ferro MT (2010) Selection and validation of reference genes for gene expression studies by reverse transcription quantitative PCR in Xanthomonas citri subsp. citri during infection of Citrus sinensis. Biotechnology Letters 33: 1177-1184.
    • (2010) Biotechnology Letters , vol.33 , pp. 1177-1184
    • Jacob, T.1    Laia, M.2    Ferro, J.3    Ferro, M.T.4
  • 31
    • 20444395386 scopus 로고    scopus 로고
    • Real-time quantitative reverse transcription-PCR analysis of expression stability of Actinobacillus pleuropneumoniae housekeeping genes during in vitro growth under iron-depleted conditions
    • DOI 10.1128/AEM.71.6.2949-2954.2005
    • Nielsen K, Boye M (2005) Real-time quantitative reverse transcription-PCR analysis of expression stability of Actinobacillus pleuropneumoniae housekeeping genes during in vitro growth under iron-depleted conditions. Appl Environ Microbiol 71: 2949-2954. (Pubitemid 40807198)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.6 , pp. 2949-2954
    • Nielsen, K.K.1    Boye, M.2
  • 32
    • 34547606969 scopus 로고    scopus 로고
    • Identification of suitable internal controls to study expression of a Staphylococcus aureus multidrug resistance system by quantitative real-time PCR
    • DOI 10.1016/j.mimet.2007.05.011, PII S0167701207001807
    • Theis T, Skurray RA, Brown MH (2007) Identification of suitable internal controls to study expression of a Staphylococcus aureus multidrug resistance system by quantitative real-time PCR. Journal of Microbiological Methods 70: 355-362. (Pubitemid 47198142)
    • (2007) Journal of Microbiological Methods , vol.70 , Issue.2 , pp. 355-362
    • Theis, T.1    Skurray, R.A.2    Brown, M.H.3
  • 33
    • 80052477657 scopus 로고    scopus 로고
    • Validation of reference genes for real-time quantitative PCR studies in gene expression levels of Lactobacillus casei Zhang
    • Zhao W, Li Y, Gao P, Sun Z, Sun T, et al. (2011) Validation of reference genes for real-time quantitative PCR studies in gene expression levels of Lactobacillus casei Zhang. Journal of Industrial Microbiology & Biotechnology 38: 1279-1286.
    • (2011) Journal of Industrial Microbiology & Biotechnology , vol.38 , pp. 1279-1286
    • Zhao, W.1    Li, Y.2    Gao, P.3    Sun, Z.4    Sun, T.5
  • 34
    • 37649001173 scopus 로고    scopus 로고
    • Evaluation of reference genes for real-time RT-PCR expression studies in the plant pathogen Pectobacterium atrosepticum
    • Takle G, Toth I, Brurberg M (2007) Evaluation of reference genes for real-time RT-PCR expression studies in the plant pathogen Pectobacterium atrosepticum. BMC Plant Biology 7: 50
    • (2007) BMC Plant Biology , vol.7 , pp. 50
    • Takle, G.1    Toth, I.2    Brurberg, M.3


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