Medusa: Simplified graph processing on GPUs

IEEE Transactions on Parallel and Distributed Systems

Volumn 25, Issue 6, 2014, Pages 1543-1552

  Zhong, Jianlong ^a   He, Bingsheng ^a  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

GPGPU; GPU programming; graph processing; runtime framework

Indexed keywords

C++ (PROGRAMMING LANGUAGE); COMPUTER GRAPHICS; COMPUTER GRAPHICS EQUIPMENT;

APPLICATION PERFORMANCE; GPGPU; GPU PROGRAMMING; GRAPH PROCESSING; GRAPHICS PROCESSING UNIT; OPTIMIZATION TECHNIQUES; PROGRAMMING FRAMEWORK; RUNTIME FRAMEWORKS;

PROGRAM PROCESSORS;

EID: 84901062419     PISSN: 10459219     EISSN: None     Source Type: Journal    
DOI: 10.1109/TPDS.2013.111     Document Type: Article

References (35)

1. 10th DIMACS Implementation Challenge, accessed on Feb. 2013. [Online]. Available: http://www.cc.gatech.edu/dimacs10/index. shtml.
2. GTGraph generator, accessed on Feb. 2013. [Online]. Available: http://www.cse.psu.edu/~madduri/software/GTgraph/index.html.
3. Stanford Large Network Dataset Collections, accessed on Feb. 2013. [Online]. Available: http://snap.stanford.edu/data/index.html.
4. T.E. Anderson, S.S. Owicki, J.B. Saxe, and C.P. Thacker, "High-Speed Switch Scheduling for Local-Area Networks," ACMTrans. Comput. Syst., vol. 11, no. 4, pp. 319-352, Nov. 1993.
5. D. Bader and K. Madduri, "SNAP, Small-World Network Analysis and Partitioning: An Open-Source Parallel Graph Framework for the Exploration of Large-Scale Networks," in Proc. IEEE IPDPS, 2008, pp. 1-12.
6. F. Bassetti, K. Davis, and D.J. Quinlan, "Optimizing Transformations of Stencil Operations for Parallel Object-Oriented Scientific Frameworks on Cache-Based Architectures," in Proc. Int. Symp. Comput. Obj.-Oriented Parallel Environ., 1998, pp. 107-118.
7. J. Berry, B. Hendrickson, S. Kahan, and P. Konecny, "Software and Algorithms for Graph Queries on Multithreaded Architectures," in Proc. IEEE IPDPS, Mar. 2007, pp. 1-14.
8. A. Buluç and J.R. Gilbert, "The Combinatorial BLAS: Design, Implementation, Applications," Int. J. High Perform. Comput. Appl., vol. 25, no. 4, pp. 496-509, Nov. 2011.
9. J. Dean and S. Ghemawat, "MapReduce: Simplified Data Processing on Large Clusters," Commun. ACM, vol. 51, no. 1, pp. 107-113, Jan. 2008.
10. M. Delorimier, N. Kapre, N. Mehta, D. Rizzo, I. Eslick, R. Rubin, T.E. Uribe, T.F. Knight, and A. Dehon, "GraphStep: A System Architecture for Sparse-Graph Algorithms," in Proc. IEEE FCCM, 2006, pp. 143-151. (Pubitemid 47159834)
11. M. Frigo and V. Strumpen, "Cache Oblivious Stencil Computations," in Proc. ICS, 2005, pp. 361-366. (Pubitemid 43251341)
12. J.E. Gonzalez, Y. Low, H. Gu, D. Bickson, and C. Guestrin, "PowerGraph: Distributed Graph-Parallel Computation on Natural Graphs," in Proc. OSDI, 2012, pp. 17-30.
13. D. Gregor and A. Lumsdaine, "The Parallel BGL: A Generic Library for Distributed Graph Computations," in Proc. POOSC, 2005, pp. 1-18.
14. P. Harish and P.J. Narayanan, "Accelerating Large Graph Algorithms on the GPU Using CUDA," in Proc. HiPC, 2007, pp. 197-208.
15. B. He, W. Fang, Q. Luo, N.K. Govindaraju, and T. Wang, "Mars: A Map Reduce Framework on Graphics Processors," in Proc. PACT, 2008, pp. 260-269.
16. G. He, H. Feng, C. Li, and H. Chen, "Parallel SimRank Computation on Large Graphs with Iterative Aggregation," in Proc. SIGKDD, 2010, pp. 543-552.
17. C. Hong, D. Chen, W. Chen, W. Zheng, and H. Lin, "MapCG: Writing Parallel Program Portable between CPU and GPU," in Proc. PACT, 2010, pp. 217-226.
18. S. Hong, H. Chafi, E. Sedlar, and K. Olukotun, "Green-Marl: A DSL for Easy and Efficient Graph Analysis," in Proc. ASPLOS, London, U.K., 2012, pp. 349-362.
19. S. Hong, S.K. Kim, T. Oguntebi, and K. Olukotun, "Accelerating CUDA Graph Algorithms at Maximum Warp," in Proc. PPoPP, 2011, pp. 267-276.
20. U. Kang, C. Tsourakakis, A.P. Appel, C. Faloutsos, and J. Leskovec, "HADI: Fast Diameter Estimation and Mining in Massive Graphs with Hadoop," Carnegie Mellon Univ., Pittsburgh, PA, USA, Tech. Rep. CMU-ML-08-117, 2008.
21. U. Kang, C.E. Tsourakakis, and C. Faloutsos, "PEGASUS: A Peta-Scale Graph Mining System V Implementation and Observations," in Proc. IEEE ICDM, 2009, pp. 229-238.
22. G. Karypis and V. Kumar, "A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs," SIAM J. Sci. Comput., vol. 20, no. 1, pp. 359-392, Aug. 1998. (Pubitemid 128689516)
23. G.J. Katz and J.T. Kider Jr., "All-Pairs Shortest-Paths for Large Graphs on the GPU," in Proc. Graph. Hardware, 2008, pp. 47-55.
24. A. Kyrola, G. Blelloch, and C. Guestrin, "GraphChi: Large-Scale Graph Computation on Just a PC," in Proc. OSDI, 2012, pp. 31-46.
25. J. Lin and M. Schatz, "Design Patterns for Efficient Graph Algorithms in Map Reduce," in Proc. MLG, 2010, pp. 78-85.
26. Y. Low, J. Gonzalez, A. Kyrola, D. Bickson, C. Guestrin, and J.M. Hellerstein, "GraphLab: A New Parallel Framework for Machine Learning," in Proc. Conf. UAI, July 2010, pp. 340-349.
27. Y. Low, J. Gonzalez, A. Kyrola, D. Bickson, C. Guestrin, and J.M. Hellerstein, "Distributed GraphLab: A Framework for Machine Learning and Data Mining in the Cloud," Proc. VLDB Endowment, vol. 5, no. 8, pp. 716-727, Apr. 2012.
28. L. Luo, M. Wong, and W.-M. Hwu, "An Effective GPU Implementation of Breadth-First Search," in Proc. DAC, 2010, pp. 52-55.
29. G. Malewicz, M. Austern, A. Bik, J. Dehnert, I. Horn, N. Leiser, and G. Czajkowski, "Pregel: A System for Large-Scale Graph Processing," in Proc. SIGMOD, 2010, pp. 135-146.
30. D. Merrill, M. Garland, and A. Grimshaw, "Scalable GPU Graph Traversal," in Proc. PPoPP, 2012, pp. 117-128.
31. J.D. Owens, D. Luebke, N.K. Govindaraju, M. Harris, J. Kruger, A.E. Lefohn, and T.J. Purcell, "A Survey of General-Purpose Computation on Graphics Hardware," in Proc. Eurographics, State Art Rep., 2005, pp. 21-51.
32. L. Page, S. Brin, R. Motwani, and T. Winograd, "The PageRank Citation Ranking: Bringing Order to the Web," Stanford Univ. InfoLab, Stanford, CA, USA, Tech. Rep., 1999.
33. S. Sengupta, M. Harris, and M. Garland, "Efficient Parallel Scan Algorithms for GPUs," NVIDIA, Santa Clara, CA, USA, Tech. Rep. NVR-2008-003, 2008.
34. J. Siek, L.-Q. Lee, and A. Lumsdaine, The Boost Graph Library: User Guide and Reference Manual. Reading, MA, USA: Addison-Wesley, 2002.
35. V. Vineet and P.J. Narayanan, "CUDA Cuts: Fast Graph Cuts on the GPU," in Proc. IEEE CVPR Workshops, June 2008, pp. 1-8.