Subcellular proteomics-where cell biology meets protein chemistry

Frontiers in Plant Science

Volumn 5, Issue FEB, 2014, Pages

  Harvey Millar, A ^a   Taylor, Nicolas L ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

Crop plants; Mass spectrometry; Model plants; Organelles; Sub cellular proteomics

Indexed keywords

EID: 84901032836     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2014.00055     Document Type: Editorial

References (26)

1. Albenne, C., Canut, H., and Jamet, E. (2013). Plant cell wall proteomics: the leadership of Arabidopsis thaliana. Front. Plant Sci. 4:111. doi: 10.3389/fpls.2013.00111
2. Bussell, J. D., Behrens, C., Ecke, W., and Eubel, H. (2013). Arabidopsis peroxisome proteomics. Front. Plant Sci. 4:101. doi: 10.3389/fpls.2013.00101
3. Carroll, A. J. (2013). The Arabidopsis cytosolic ribosomal proteome: from form to function. Front. Plant Sci. 4:32. doi: 10.3389/fpls.2013.00032
4. Casati, P. (2012). Recent advances in maize nuclear proteomic studies reveal histone modifications. Front. Plant Sci. 3:278. doi: 10.3389/fpls.2012.00278
5. Eubel, H., Lee, C. P., Kuo, J., Meyer, E. H., Taylor, N. L., and Millar, A. H. (2007). Free-flow electrophoresis for purification of plant mitochondria by surface charge. Plant J. 52, 583-594. doi: 10.1111/j.1365-313X.2007.03253.x
6. Havelund, J. F., Thelen, J. J., and Moller, I. M. (2013). Biochemistry, proteomics, and phosphoproteomics of plant mitochondria from non-photosynthetic cells. Front. Plant Sci. 4:51. doi: 10.3389/fpls.2013.00051
7. Huang, S., Shingaki-Wells, R. N., Taylor, N. L., and Millar, A. H. (2013). The rice mitochondria proteome and its response during development and to the environment. Front. Plant Sci. 4:16. doi: 10.3389/fpls.2013.00016
8. Huang, S., Taylor, N. L., Narsai, R., Eubel, H., Whelan, J., and Millar, A. H. (2009). Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity. Plant Physiol. 149, 719-734. doi: 10.1104/pp.108.131300
9. Ito, J., Parsons, H. T., and Heazlewood, J. L. (2014). The Arabidopsis cytosolic proteome: the metabolic heart of the cell. Front. Plant Sci. 5:21. doi: 10.3389/fpls.2014.00021
10. Kiirika, L. M., Behrens, C., Braun, H. P., and Colditz, F. (2013). The Mitochondrial complexome of Medicago truncatula. Front. Plant Sci. 4:84. doi: 10.3389/fpls.2013.00084
11. Komatsu, S., and Yanagawa, Y. (2013). Cell wall proteomics of crops. Front. Plant Sci. 4:17. doi: 10.3389/fpls.2013.00017
12. Lee, C. P., Taylor, N. L., and Millar, A. H. (2013a). Recent advances in the composition and heterogeneity of the Arabidopsis mitochondrial proteome. Front. Plant Sci. 4:4. doi: 10.3389/fpls.2013.00004
13. Lee, J., Lei, Z., Watson, B. S., and Sumner, L. W. (2013b). Sub-cellular proteomics of Medicago truncatula. Front. Plant Sci. 4:112. doi: 10.3389/fpls.2013.00112
14. Narula, K., Datta, A., Chakraborty, N., and Chakraborty, S. (2013). Comparative analyses of nuclear proteome: extending its function. Front. Plant Sci. 4:100. doi: 10.3389/fpls.2013.00100
15. Parsons, H. T., Christiansen, K., Knierim, B., Carroll, A., Ito, J., Batth, T. S., et al. (2012). Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Plant Physiol. 159, 12-26. doi: 10.1104/pp.111.193151
16. Peters, K., Belt, K., and Braun, H. P. (2013). 3D Gel Map of Arabidopsis Complex I. Front. Plant Sci. 4l:153. doi: 10.3389/fpls.2013.00153
17. Petersen, J., Rogowska-Wrzesinska, A., and Jensen, O. N. (2013). Functional proteomics of barley and barley chloroplasts-strategies, methods and perspectives. Front. Plant Sci. 4:52. doi: 10.3389/fpls.2013.00052
18. Repetto, O., Rogniaux, H., Larre, C., Thompson, R., and Gallardo, K. (2012). The seed nuclear proteome. Front. Plant Sci. 3:289. doi: 10.3389/fpls.2012.00289
19. Ruiz-May, E., and Rose, J. K. (2013). Progress toward the tomato fruit cell wall proteome. Front. Plant Sci. 4:159. doi: 10.3389/fpls.2013.00159
20. Salmon, M. S., and Bayer, E. M. (2012). Dissecting plasmodesmata molecular composition by mass spectrometry-based proteomics. Front. Plant Sci. 3:307. doi: 10.3389/fpls.2012.00307
21. Simm, S., Papasotiriou, D. G., Ibrahim, M., Leisegang, M. S., Muller, B., Schorge, T., et al. (2013). Defining the core proteome of the chloroplast envelope membranes. Front. Plant Sci. 4:11. doi: 10.3389/fpls.2013.00011
22. Takahashi, D., Kawamura, Y., and Uemura, M. (2013). Detergent-resistant plasma membrane proteome to elucidate microdomain functions in plant cells. Front. Plant Sci. 4:27. doi: 10.3389/fpls.2013.00027
23. Tan, Y. F., Millar, A. H., and Taylor, N. L. (2012). Components of mitochondrial oxidative phosphorylation vary in abundance following exposure to cold and chemical stresses. J. Proteome Res. 11, 3860-3879. doi: 10.1021/pr3003535
24. Tanz, S. K., Castleden, I., Hooper, C. M., Vacher, M., Small, I., and Millar, H. A. (2013). SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41, D1185-D1191. doi: 10.1093/nar/gks1151
25. Yadeta, K. A., Elmore, J. M., and Coaker, G. (2013). Advancements in the analysis of the Arabidopsis plasma membrane proteome. Front. Plant Sci. 4:86. doi: 10.3389/fpls.2013.00086
26. Zhang, Z., Voothuluru, P., Yamaguchi, M., Sharp, R. E., and Peck, S. C. (2013). Developmental distribution of the plasma membrane-enriched proteome in the maize primary root growth zone. Front. Plant Sci. 4:33. doi: 10.3389/fpls.2013.00033