-
1
-
-
23644454808
-
Nuclear MRP genes and mitochondrial disease
-
OBrien TW, OBrien BJ, Norman RA (2005) Nuclear MRP genes and mitochondrial disease. Gene 354:147-151.
-
(2005)
Gene
, vol.354
, pp. 147-151
-
-
Obrien, T.W.1
Obrien, B.J.2
Norman, R.A.3
-
3
-
-
77952560288
-
Unique features of animal mitochondrial translation systems. The non-universal genetic code, unusual features of the translational apparatus and their relevance to human mitochondrial diseases
-
Watanabe K (2010) Unique features of animal mitochondrial translation systems. The non-universal genetic code, unusual features of the translational apparatus and their relevance to human mitochondrial diseases. Proc Jpn Acad, Ser B, Phys Biol Sci 86(1): 11-39.
-
(2010)
Proc Jpn Acad, ser B, Phys Biol Sci
, vol.86
, Issue.1
, pp. 11-39
-
-
Watanabe, K.1
-
4
-
-
0141953259
-
Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins
-
Sharma MR, et al. (2003) Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins. Cell 115(1):97-108.
-
(2003)
Cell
, vol.115
, Issue.1
, pp. 97-108
-
-
Sharma, M.R.1
-
5
-
-
67649878215
-
Structure of a mitochondrial ribosome with minimal RNA
-
Sharma MR, Booth TM, Simpson L, Maslov DA, Agrawal RK (2009) Structure of a mitochondrial ribosome with minimal RNA. Proc Natl Acad Sci USA 106(24):9637-9642.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.24
, pp. 9637-9642
-
-
Sharma, M.R.1
Booth, T.M.2
Simpson, L.3
Maslov, D.A.4
Agrawal, R.K.5
-
6
-
-
33645106536
-
A structural model for the large subunit of the mammalian mitochondrial ribosome
-
Mears JA, et al. (2006) A structural model for the large subunit of the mammalian mitochondrial ribosome. J Mol Biol 358(1):193-212.
-
(2006)
J Mol Biol
, vol.358
, Issue.1
, pp. 193-212
-
-
Mears, J.A.1
-
7
-
-
0034913239
-
The origin and early evolution of mitochondria
-
Reviews1018.1-1018.5
-
Gray MW, Burger G, Lang BF (2001) The origin and early evolution of mitochondria. Genome Biol 2(6):Reviews1018.1-1018.5.
-
(2001)
Genome Biol
, vol.2
, pp. 6
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
8
-
-
79960142698
-
-
Ribosomes: Structure, Function, and Dynamics, eds Rodnina MV, Wintermeyer W, Green R Springer, New York
-
Agrawal RK, Sharma MR, Yassin AS, Lahiri I, Spremulli L (2011) Structure and Function of Organellar Ribosomes as Revealed by Cryo-EM. Ribosomes: Structure, Function, and Dynamics, eds Rodnina MV, Wintermeyer W, Green R (Springer, New York), pp 83-96.
-
(2011)
Structure and Function of Organellar Ribosomes As Revealed by Cryo-EM
, pp. 83-96
-
-
Agrawal, R.K.1
Sharma, M.R.2
Yassin, A.S.3
Lahiri, I.4
Spremulli, L.5
-
9
-
-
84870392446
-
Structural aspects of mitochondrial translational apparatus
-
Agrawal RK, Sharma MR (2012) Structural aspects of mitochondrial translational apparatus. Curr Opin Struct Biol 22(6):797-803.
-
(2012)
Curr Opin Struct Biol
, vol.22
, Issue.6
, pp. 797-803
-
-
Agrawal, R.K.1
Sharma, M.R.2
-
10
-
-
84929296089
-
-
Translation in Mitochondria and Other Organelles, ed Duchne A-M Springer, Berlin
-
Sharma MR, Kaushal PS, Gupta M, Banavali NK, Agrawal RK (2013) Insights into Structural Basis of Mammalian Mitochondrial Translation. Translation in Mitochondria and Other Organelles, ed Duchne A-M (Springer, Berlin), pp 1-28.
-
(2013)
Insights into Structural Basis of Mammalian Mitochondrial Translation
, pp. 1-28
-
-
Sharma, M.R.1
Kaushal, P.S.2
Gupta, M.3
Banavali, N.K.4
Agrawal, R.K.5
-
11
-
-
84892797558
-
Architecture of the large subunit of the mammalian mitochondrial ribosome
-
Greber BJ, et al. (2014) Architecture of the large subunit of the mammalian mitochondrial ribosome. Nature 505(7484):515-519.
-
(2014)
Nature
, vol.505
, Issue.7484
, pp. 515-519
-
-
Greber, B.J.1
-
12
-
-
84884580316
-
Identification and characterization of CHCHD1 AURKAIP1, and CRIF1 as new members of the mammalian mitochondrial ribosome
-
Koc EC, et al. (2013) Identification and characterization of CHCHD1, AURKAIP1, and CRIF1 as new members of the mammalian mitochondrial ribosome. Front Physiol 4:183.
-
(2013)
Front Physiol
, vol.4
, pp. 183
-
-
Koc, E.C.1
-
13
-
-
77953871736
-
Human mitochondrial mRNAs-like members of all families, similar but different
-
Temperley RJ, Wydro M, Lightowlers RN, Chrzanowska-Lightowlers ZM (2010) Human mitochondrial mRNAs-like members of all families, similar but different. Biochim Biophys Acta 1797(6-7):1081-1085.
-
(2010)
Biochim Biophys Acta
, vol.1797
, Issue.6-7
, pp. 1081-1085
-
-
Temperley, R.J.1
Wydro, M.2
Lightowlers, R.N.3
Chrzanowska-Lightowlers, Z.M.4
-
14
-
-
77952581453
-
Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
-
Pintilie GD, Zhang J, Goddard TD, Chiu W, Gossard DC (2010) Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions. J Struct Biol 170(3):427-438.
-
(2010)
J Struct Biol
, vol.170
, Issue.3
, pp. 427-438
-
-
Pintilie, G.D.1
Zhang, J.2
Goddard, T.D.3
Chiu, W.4
Gossard, D.C.5
-
15
-
-
79960555933
-
Human diseases with impaired mitochondrial protein synthesis
-
Rötig A (2011) Human diseases with impaired mitochondrial protein synthesis. Biochim Biophys Acta 1807(9):1198-1205.
-
(2011)
Biochim Biophys Acta
, Issue.9
, pp. 1198-1205
-
-
Rötig, A.1
-
16
-
-
67349234111
-
Pentatricopeptide repeat domain protein 3 associates with the mitochondrial small ribosomal subunit and regulates translation
-
Davies SM, et al. (2009) Pentatricopeptide repeat domain protein 3 associates with the mitochondrial small ribosomal subunit and regulates translation. FEBS Lett 583(12):1853-1858.
-
(2009)
FEBS Lett
, vol.583
, Issue.12
, pp. 1853-1858
-
-
Davies, S.M.1
-
17
-
-
9144268494
-
Defective mitochondrial translation caused by a ribosomal protein (MRPS16) mutation
-
Miller C, et al. (2004) Defective mitochondrial translation caused by a ribosomal protein (MRPS16) mutation. Ann Neurol 56(5):734-738.
-
(2004)
Ann Neurol
, vol.56
, Issue.5
, pp. 734-738
-
-
Miller, C.1
-
18
-
-
45449099046
-
The effect of mutated mitochondrial ribosomal proteins S16 and S22 on the assembly of the small and large ribosomal subunits in human mitochondria
-
Emdadul Haque M, Grasso D, Miller C, Spremulli LL, Saada A (2008) The effect of mutated mitochondrial ribosomal proteins S16 and S22 on the assembly of the small and large ribosomal subunits in human mitochondria. Mitochondrion 8(3):254-261.
-
(2008)
Mitochondrion
, vol.8
, Issue.3
, pp. 254-261
-
-
Emdadul Haque, M.1
Grasso, D.2
Miller, C.3
Spremulli, L.L.4
Saada, A.5
-
19
-
-
78649513967
-
Current views of the structure of the mammalian mitochondrial ribosome
-
Koc EC, Haque ME, Spremulli LL (2010) Current views of the structure of the mammalian mitochondrial ribosome. Isr J Chem 50:45-59.
-
(2010)
Isr J Chem
, vol.50
, pp. 45-59
-
-
Koc, E.C.1
Haque, M.E.2
Spremulli, L.L.3
-
20
-
-
0035831128
-
A new face on apoptosis: Death-Associated protein 3 and PDCD9 are mitochondrial ribosomal proteins
-
Cavdar Koc E, et al. (2001) A new face on apoptosis: Death-Associated protein 3 and PDCD9 are mitochondrial ribosomal proteins. FEBS Lett 492(1-2):166-170.
-
(2001)
FEBS Lett
, vol.492
, Issue.1-2
, pp. 166-170
-
-
Cavdar Koc, E.1
-
21
-
-
84901024987
-
Three-dimensional localization of the GTP-binding protein within the mammalian mitochondrial ribosome
-
Sharma MR, et al. (2011) Three-dimensional localization of the GTP-binding protein within the mammalian mitochondrial ribosome. Mitochondrion 11(4):657.
-
(2011)
Mitochondrion
, vol.11
, Issue.4
, pp. 657
-
-
Sharma, M.R.1
-
22
-
-
34547894695
-
Reconstructing the evolution of the mitochondrial ribosomal proteome
-
Smits P, Smeitink JA, van den Heuvel LP, Huynen MA, Ettema TJ (2007) Reconstructing the evolution of the mitochondrial ribosomal proteome. Nucleic Acids Res 35(14): 4686-4703.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.14
, pp. 4686-4703
-
-
Smits, P.1
Smeitink, J.A.2
Van Den Heuvel, L.P.3
Huynen, M.A.4
Ettema, T.J.5
-
23
-
-
80054966979
-
Contacts between mammalian mitochondrial translational initiation factor 3 and ribosomal proteins in the small subunit
-
Haque ME, Koc H, Cimen H, Koc EC, Spremulli LL (2011) Contacts between mammalian mitochondrial translational initiation factor 3 and ribosomal proteins in the small subunit. Biochim Biophys Acta 1814(12):1779-1784.
-
(2011)
Biochim Biophys Acta
, Issue.12
, pp. 1779-1784
-
-
Haque, M.E.1
Koc, H.2
Cimen, H.3
Koc, E.C.4
Spremulli, L.L.5
-
24
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 resolution
-
Ben-Shem A, et al. (2011) The structure of the eukaryotic ribosome at 3.0 resolution. Science 334(6062):1524-1529.
-
(2011)
Science
, vol.334
, Issue.6062
, pp. 1524-1529
-
-
Ben-Shem, A.1
-
25
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, et al. (2000) Structure of the 30S ribosomal subunit. Nature 407(6802): 327-339.
-
(2000)
Nature
, vol.407
, Issue.6802
, pp. 327-339
-
-
Wimberly, B.T.1
-
26
-
-
0035380711
-
The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present
-
Cavdar Koc E, Burkhart W, Blackburn K, Moseley A, Spremulli LL (2001) The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. J Biol Chem 276(22):19363-19374.
-
(2001)
J Biol Chem
, vol.276
, Issue.22
, pp. 19363-19374
-
-
Cavdar Koc, E.1
Burkhart, W.2
Blackburn, K.3
Moseley, A.4
Spremulli, L.L.5
-
27
-
-
0035980117
-
Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit
-
Suzuki T, et al. (2001) Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit. J Biol Chem 276(35): 33181-33195.
-
(2001)
J Biol Chem
, vol.276
, Issue.35
, pp. 33181-33195
-
-
Suzuki, T.1
-
28
-
-
0035958587
-
The path of messenger RNA through the ribosome
-
Yusupova GZ, Yusupov MM, Cate JH, Noller HF (2001) The path of messenger RNA through the ribosome. Cell 106(2):233-241.
-
(2001)
Cell
, vol.106
, Issue.2
, pp. 233-241
-
-
Yusupova, G.Z.1
Yusupov, M.M.2
Cate, J.H.3
Noller, H.F.4
-
29
-
-
0019616627
-
The function of ribosomal protein S21 in protein synthesis
-
Van Duin J, Wijnands R (1981) The function of ribosomal protein S21 in protein synthesis. Eur J Biochem 118(3):615-619.
-
(1981)
Eur J Biochem
, vol.118
, Issue.3
, pp. 615-619
-
-
Van Duin, J.1
Wijnands, R.2
-
30
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 A resolution
-
Schuwirth BS, et al. (2005) Structures of the bacterial ribosome at 3.5 A resolution. Science 310(5749):827-834.
-
(2005)
Science
, vol.310
, Issue.5749
, pp. 827-834
-
-
Schuwirth, B.S.1
-
31
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 A resolution
-
Yusupov MM, et al. (2001) Crystal structure of the ribosome at 5.5 A resolution. Science 292(5518):883-896.
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 883-896
-
-
Yusupov, M.M.1
-
32
-
-
40949089669
-
Large-scale isolation of mitochondrial ribosomes from mammalian tissues
-
Spremulli LL (2007) Large-scale isolation of mitochondrial ribosomes from mammalian tissues. Methods Mol Biol 372:265-275.
-
(2007)
Methods Mol Biol
, vol.372
, pp. 265-275
-
-
Spremulli, L.L.1
-
33
-
-
39149091041
-
Preparation of macromolecular complexes for cryo-electron microscopy
-
Grassucci RA, Taylor DJ, Frank J (2007) Preparation of macromolecular complexes for cryo-electron microscopy. Nat Protoc 2(12):3239-3246.
-
(2007)
Nat Protoc
, vol.2
, Issue.12
, pp. 3239-3246
-
-
Grassucci, R.A.1
Taylor, D.J.2
Frank, J.3
-
34
-
-
0036646535
-
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process
-
Valle M, et al. (2002) Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. EMBO J 21(13):3557-3567.
-
(2002)
EMBO J
, vol.21
, Issue.13
, pp. 3557-3567
-
-
Valle, M.1
-
35
-
-
58049204808
-
SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs
-
Shaikh TR, et al. (2008) SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc 3(12):1941-1974.
-
(2008)
Nat Protoc
, vol.3
, Issue.12
, pp. 1941-1974
-
-
Shaikh, T.R.1
-
36
-
-
84868444740
-
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres SH (2012) RELION: Implementation of a Bayesian approach to cryo-EM structure determination. J Struct Biol 180(3):519-530.
-
(2012)
J Struct Biol
, vol.180
, Issue.3
, pp. 519-530
-
-
Scheres, S.H.1
-
37
-
-
0036786684
-
All-Atom homology model of the Escherichia coli 30S ribosomal subunit
-
Tung CS, Joseph S, Sanbonmatsu KY (2002) All-Atom homology model of the Escherichia coli 30S ribosomal subunit. Nat Struct Biol 9(10):750-755.
-
(2002)
Nat Struct Biol
, vol.9
, Issue.10
, pp. 750-755
-
-
Tung, C.S.1
Joseph, S.2
Sanbonmatsu, K.Y.3
-
38
-
-
0021757436
-
A new force field for molecular mechanical simulation of nucleic acids and proteins
-
Weiner SJ, et al. (1984) A new force field for molecular mechanical simulation of nucleic acids and proteins. J Am Chem Soc 106(3):765-784.
-
(1984)
J Am Chem Soc
, vol.106
, Issue.3
, pp. 765-784
-
-
Weiner, S.J.1
-
39
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone JJ, et al. (2002) The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3:2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
-
40
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
Roy A, Kucukural A, Zhang Y (2010) I-TASSER: A unified platform for automated protein structure and function prediction. Nat Protoc 5(4):725-738.
-
(2010)
Nat Protoc
, vol.5
, Issue.4
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
41
-
-
77955358961
-
Using Situs for the integration of multi-resolution structures
-
Wriggers W (2010) Using Situs for the integration of multi-resolution structures. Biophys Rev 2(1):21-27.
-
(2010)
Biophys Rev
, vol.2
, Issue.1
, pp. 21-27
-
-
Wriggers, W.1
-
42
-
-
4444221565
-
UCSF Chimera-A visualization system for exploratory research and analysis
-
Pettersen EF, et al. (2004) UCSF Chimera-A visualization system for exploratory research and analysis. J Comput Chem 25(13):1605-1612.
-
(2004)
J Comput Chem
, vol.25
, Issue.13
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
43
-
-
77949535720
-
Features and development of Coot
-
Emsley P, Lohkamp B, Scott WG, Cowtan K (2010) Features and development of Coot. Acta Crystallogr D Biol Crystallogr 66(Pt 4):486-501.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 4
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
44
-
-
70349267547
-
Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography
-
Trabuco LG, Villa E, Schreiner E, Harrison CB, Schulten K (2009) Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography. Methods 49(2):174-180.
-
(2009)
Methods
, vol.49
, Issue.2
, pp. 174-180
-
-
Trabuco, L.G.1
Villa, E.2
Schreiner, E.3
Harrison, C.B.4
Schulten, K.5
|