메뉴 건너뛰기




Volumn 4, Issue SEP, 2013, Pages

Assessing duplication and loss of APETALA1/FRUITFULL homologs in Ranunculales

Author keywords

Apetala1; Basal eudicots; Fruitfull; Fruitfull like; Gene duplication; Ranunculales

Indexed keywords


EID: 84900864178     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2013.00358     Document Type: Article
Times cited : (25)

References (75)
  • 1
    • 33750266047 scopus 로고    scopus 로고
    • Relaxed selection among duplicate floral regulatory genes in Lamiales
    • doi: 10.1007/s00239-005-0306-x
    • Aagaard, J. E., Willis, J. H., and Phillips, P. C. (2006). Relaxed selection among duplicate floral regulatory genes in Lamiales. J. Mol. Evol. 63, 493-503. doi: 10.1007/s00239-005-0306-x
    • (2006) J. Mol. Evol , vol.63 , pp. 493-503
    • Aagaard, J.E.1    Willis, J.H.2    Phillips, P.C.3
  • 2
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • doi: 10.1109/TAC.1974. 1100705
    • Akaike, H. (1974). A new look at the statistical model identification. IEEE Trans. Automat. Contr. 19, 716-723. doi: 10.1109/TAC.1974. 1100705
    • (1974) IEEE Trans. Automat. Contr , vol.19 , pp. 716-723
    • Akaike, H.1
  • 3
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • doi: 10.1006/jmbi.1990.9999
    • Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410. doi: 10.1006/jmbi.1990.9999
    • (1990) J. Mol. Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 4
    • 33749032123 scopus 로고    scopus 로고
    • Unique and redundant functional domains of APETALA1 and CAULIFLOWER, two recently duplicated Arabidopsis thaliana floral MADS-box genes
    • doi: 10.1093/jxb/erl081
    • Alvarez-Buylla, E. R., García-Ponce, B., and Garay-Arroyo, A. (2006). Unique and redundant functional domains of APETALA1 and CAULIFLOWER, two recently duplicated Arabidopsis thaliana floral MADS-box genes. J. Exp. Bot. 57, 3099-3107. doi: 10.1093/jxb/erl081
    • (2006) J. Exp. Bot , vol.57 , pp. 3099-3107
    • Alvarez-Buylla, E.R.1    García-Ponce, B.2    Garay-Arroyo, A.3
  • 5
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • APG, doi: 10.1111/j.1095-8339.2009.00 996.x
    • APG. (2009). An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161, 105-121. doi: 10.1111/j.1095-8339.2009.00 996.x
    • (2009) Bot. J. Linn. Soc , vol.161 , pp. 105-121
  • 6
    • 77949523463 scopus 로고    scopus 로고
    • Paleopolyploidy in the Brassicales: Analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales
    • doi: 10.1093/gbe/evp040
    • Barker, M. S., Vogel, H., and Schranz, M. E. (2009). Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales. Genome Biol. Evol. 1, 391-399. doi: 10.1093/gbe/evp040
    • (2009) Genome Biol. Evol , vol.1 , pp. 391-399
    • Barker, M.S.1    Vogel, H.2    Schranz, M.E.3
  • 7
    • 84871909033 scopus 로고    scopus 로고
    • The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening
    • doi: 10.1105/tpc.112.103283
    • Bemer, M., Karlova, R., Ballester, A. R., Tikunov, Y. M., Bovy, A. G., Wolters-Arts, M., et al. (2012). The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening. Plant Cell 24, 4437-4451. doi: 10.1105/tpc.112.103283
    • (2012) Plant Cell , vol.24 , pp. 4437-4451
    • Bemer, M.1    Karlova, R.2    Ballester, A.R.3    Tikunov, Y.M.4    Bovy, A.G.5    Wolters-Arts, M.6
  • 8
    • 33751103935 scopus 로고    scopus 로고
    • Isolation of mtpim proves Tnt1 a useful reverse genetics tool in Medicago truncatula and uncovers new aspects of AP1-like functions in legumes
    • doi: 10.1104/pp.106.083543
    • Benlloch, R., d'Erfurth, I., Ferrandiz, C., Cosson, V., Beltrán, J. P., Cañas, L. A., et al. (2006). Isolation of mtpim proves Tnt1 a useful reverse genetics tool in Medicago truncatula and uncovers new aspects of AP1-like functions in legumes. Plant Physiol. 142, 972-983. doi: 10.1104/pp.106.083543
    • (2006) Plant Physiol , vol.142 , pp. 972-983
    • Benlloch, R.1    D'Erfurth, I.2    Ferrandiz, C.3    Cosson, V.4    Beltrán, J.P.5    Cañas, L.A.6
  • 9
    • 84860277665 scopus 로고    scopus 로고
    • VEGETATIVE1 is essential for development of the compound inflorescence in pea
    • doi: 10.1038/ncomms1801
    • Berbel, A., Ferrandiz, C., Hecht, V., Dalmais, M., Lund, O. S., Sussmilch, F. C., et al. (2012). VEGETATIVE1 is essential for development of the compound inflorescence in pea. Nat. Commun. 3 797. doi: 10.1038/ncomms1801
    • (2012) Nat. Commun , vol.3 , pp. 797
    • Berbel, A.1    Ferrandiz, C.2    Hecht, V.3    Dalmais, M.4    Lund, O.S.5    Sussmilch, F.C.6
  • 10
    • 0035080304 scopus 로고    scopus 로고
    • Analysis of PEAM4, the pea AP1 functional homologue, supports a model for AP1-like genes controlling both floral meristem and floral organ identity in different plant species
    • doi: 10.1046/j.1365-313x.2001.00974.x
    • Berbel, A., Navarro, C., Ferrandiz, C., Cañas, L. A., Madueño, F., and Beltrán, J. (2001). Analysis of PEAM4, the pea AP1 functional homologue, supports a model for AP1-like genes controlling both floral meristem and floral organ identity in different plant species. Plant J. 25, 441-451. doi: 10.1046/j.1365-313x.2001.00974.x
    • (2001) Plant J , vol.25 , pp. 441-451
    • Berbel, A.1    Navarro, C.2    Ferrandiz, C.3    Cañas, L.A.4    Madueño, F.5    Beltrán, J.6
  • 11
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large scale duplications in the Arabidopsis genome
    • doi: 10.1101/gr.751803
    • Blanc, G., Hokamp, K., and Wolfe, K. H. (2003). A recent polyploidy superimposed on older large scale duplications in the Arabidopsis genome. Genome Res. 13, 137-144. doi: 10.1101/gr.751803
    • (2003) Genome Res , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 12
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
    • doi: 10.1105/tpc.021410
    • Blanc, G., and Wolfe, K. H. (2004). Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16, 1679-1691. doi: 10.1105/tpc.021410
    • (2004) Plant Cell , vol.16 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 13
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • doi: 10.1038/nature01521
    • Bowers, J. L., Chapman, B. A., Rong, J., and Paterson, A. H. (2003). Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422, 433-438. doi: 10.1038/nature01521
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.L.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 14
    • 0027518011 scopus 로고
    • Control of flower development in Arabidopsis thaliana by APETALA1 and interacting genes
    • Bowman, J., Alvarez, J., Weigel, D., Meyerowitz, E. M., and Smyth, D. R. (1993). Control of flower development in Arabidopsis thaliana by APETALA1 and interacting genes. Development 119, 721-743.
    • (1993) Development , vol.119 , pp. 721-743
    • Bowman, J.1    Alvarez, J.2    Weigel, D.3    Meyerowitz, E.M.4    Smyth, D.R.5
  • 15
    • 84880946543 scopus 로고    scopus 로고
    • A role for APETALA1/FRUITFULL transcription factors in tomato leaf development
    • doi: 10.1105/tpc.113.113035
    • Burko, Y., Shleizer-Burko, S., Yanai, O., Shwartz, I., Zelnik, I. D., JacobHirsch, J., et al. (2013). A role for APETALA1/FRUITFULL transcription factors in tomato leaf development. Plant Cell 25, 2070-2083. doi: 10.1105/tpc.113.113035
    • (2013) Plant Cell , vol.25 , pp. 2070-2083
    • Burko, Y.1    Shleizer-Burko, S.2    Yanai, O.3    Shwartz, I.4    Zelnik, I.D.5    Jacobhirsch, J.6
  • 16
    • 27144476605 scopus 로고    scopus 로고
    • A new role of the Arabidopsis SEPALLATA3 gene revealed by its constitutive expression
    • doi: 10.1111/j.1365-313X.2005.02476.x
    • Castillejo, C., Romera-Branchat, M., and Pelaz, S. (2005). A new role of the Arabidopsis SEPALLATA3 gene revealed by its constitutive expression. Plant J. 43, 586-596. doi: 10.1111/j.1365-313X.2005.02476.x
    • (2005) Plant J , vol.43 , pp. 586-596
    • Castillejo, C.1    Romera-Branchat, M.2    Pelaz, S.3
  • 17
    • 0033150367 scopus 로고    scopus 로고
    • Analysis of the C-terminal region of Arabidopsis thaliana APETALA1 as a transcription activation domain
    • doi: 10.1023/A:1006273127067
    • Cho, S., Jang, S., Chae, S., Chung, K. M., Moon, Y., An, G., et al. (1999). Analysis of the C-terminal region of Arabidopsis thaliana APETALA1 as a transcription activation domain. Plant Mol. Biol. 40, 419-429. doi: 10.1023/A:1006273127067
    • (1999) Plant Mol. Biol , vol.40 , pp. 419-429
    • Cho, S.1    Jang, S.2    Chae, S.3    Chung, K.M.4    Moon, Y.5    An, G.6
  • 18
    • 0026417225 scopus 로고
    • The war of the whorls: Genetic interactions controlling flower development
    • doi: 10.1038/353031a0
    • Coen, E., and Meyerowitz, E. M. (1991). The war of the whorls: genetic interactions controlling flower development. Nature 353, 31-37. doi: 10.1038/353031a0
    • (1991) Nature , vol.353 , pp. 31-37
    • Coen, E.1    Meyerowitz, E.M.2
  • 19
    • 0141853996 scopus 로고    scopus 로고
    • Asymmetric sequence divergence of duplicate genes
    • doi: 10.1101/gr.1252603
    • Conant, G., and Wagner, A. (2002). Asymmetric sequence divergence of duplicate genes. Genome Res. 13, 2052-2058. doi: 10.1101/gr.1252603
    • (2002) Genome Res , vol.13 , pp. 2052-2058
    • Conant, G.1    Wagner, A.2
  • 20
    • 33744822985 scopus 로고    scopus 로고
    • Widespread genome duplications throughout the history of flowering plants
    • doi: 10.1101/gr.4825606
    • Cui, L., Wall, P. K., Leebens-Mack, J., Lindsay, B. G., Soltis, D. E., and Doyle, J. J. (2006). Widespread genome duplications throughout the history of flowering plants. Genome Res. 16, 738-749. doi: 10.1101/gr.4825606
    • (2006) Genome Res , vol.16 , pp. 738-749
    • Cui, L.1    Wall, P.K.2    Leebens-Mack, J.3    Lindsay, B.G.4    Soltis, D.E.5    Doyle, J.J.6
  • 21
    • 0035065391 scopus 로고    scopus 로고
    • Differential selection after duplication in mammalian developmental genes
    • doi: 10.1093/oxfordjour-nals.molbev.a003835
    • Dermitzakis, E., and Clark, A. (2001). Differential selection after duplication in mammalian developmental genes. Mol. Biol. Evol. 18, 557-562. doi: 10.1093/oxfordjour-nals.molbev.a003835
    • (2001) Mol. Biol. Evol , vol.18 , pp. 557-562
    • Dermitzakis, E.1    Clark, A.2
  • 22
    • 0037653800 scopus 로고    scopus 로고
    • Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER
    • Ferrándiz, C., Gu, Q., Martienssen, R., and Yanofsky, M. F. (2000). Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development 127, 725-734.
    • (2000) Development , vol.127 , pp. 725-734
    • Ferrándiz, C.1    Gu, Q.2    Martienssen, R.3    Yanofsky, M.F.4
  • 23
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary degenerative mutations
    • Force, A., Lynch, M., Pickett, F., Amores, A., Yan, Y., and Postlehwait, J. (1999). Preservation of duplicate genes by complementary degenerative mutations. Genetics 151, 1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.3    Amores, A.4    Yan, Y.5    Postlehwait, J.6
  • 24
    • 23444458415 scopus 로고
    • Transcriptional activation modulated by homopoly-meric glutamine and proline stretches
    • doi: 10.1126/science.8303297
    • Gerber, H. P., Seipel, K., Georgiev, O., Hofferer, M., Hug, M., Rusconi, S., et al. (1994). Transcriptional activation modulated by homopoly-meric glutamine and proline stretches. Science 263, 808-811. doi: 10.1126/science.8303297
    • (1994) Science , vol.263 , pp. 808-811
    • Gerber, H.P.1    Seipel, K.2    Georgiev, O.3    Hofferer, M.4    Hug, M.5    Rusconi, S.6
  • 25
    • 2642701744 scopus 로고    scopus 로고
    • The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development
    • Gu, Q., Ferrandiz, C., Yanofsky, M. F., and Martienssen, R. (1998). The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development. Development 125, 1509-1517.
    • (1998) Development , vol.125 , pp. 1509-1517
    • Gu, Q.1    Ferrandiz, C.2    Yanofsky, M.F.3    Martienssen, R.4
  • 26
    • 0028178790 scopus 로고
    • Regulation of the Arabidopsis floral homeotic gene APETALA1
    • doi: 10.1016/0092-8674 (94)90178-3
    • Gustafson-Brown, C., Savidge, B., and Yanofsky, M. F. (1994). Regulation of the Arabidopsis floral homeotic gene APETALA1. Cell 76, 131-143. doi: 10.1016/0092-8674 (94)90178-3
    • (1994) Cell , vol.76 , pp. 131-143
    • Gustafson-Brown, C.1    Savidge, B.2    Yanofsky, M.F.3
  • 27
    • 33747817940 scopus 로고    scopus 로고
    • Toward a molecular understanding of pleiotropy
    • doi: 10.1534/genetics.106.060269
    • He, X., and Zhang, J. (2006). Toward a molecular understanding of pleiotropy. Genetics 173, 1885-1891. doi: 10.1534/genetics.106.060269
    • (2006) Genetics , vol.173 , pp. 1885-1891
    • He, X.1    Zhang, J.2
  • 28
    • 0026525383 scopus 로고
    • Bracteomania, an inflorescence anomaly, is caused by the loss of function of the MADSbox gene squamosa in Antirrhinum majus
    • Huijser, P., Klein, J., Lonnig, W-E., Meijer, H., Saedler, H., and Sommer, H. (1992). Bracteomania, an inflorescence anomaly, is caused by the loss of function of the MADSbox gene squamosa in Antirrhinum majus. EMBO J. 11, 1239-1249.
    • (1992) EMBO J , vol.11 , pp. 1239-1249
    • Huijser, P.1    Klein, J.2    Lonnig, W.-E.3    Meijer, H.4    Saedler, H.5    Sommer, H.6
  • 29
    • 0036720020 scopus 로고    scopus 로고
    • The Ka/Ks ratio: Diagnosing the form of sequence evolution
    • doi: 10.1016/S0168-9525(02) 02722-1
    • Hurst, L. D. (2002). The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genetics 18, 486. doi: 10.1016/S0168-9525(02) 02722-1
    • (2002) Trends Genetics , vol.18 , pp. 486
    • Hurst, L.D.1
  • 30
  • 32
    • 0025465594 scopus 로고
    • Function of the apetala-1 gene during Arabídopsis floral development
    • doi: 10.2307/3869173
    • Irish, V. F., and Sussex, I. M. (1990). Function of the apetala-1 gene during Arabídopsis floral development. Plant Cell 2, 741-753. doi: 10.2307/3869173
    • (1990) Plant Cell , vol.2 , pp. 741-753
    • Irish, V.F.1    Sussex, I.M.2
  • 33
    • 77955683346 scopus 로고    scopus 로고
    • A SQUAMOSA MADS box gene is involved in the regulation of anthocyanin accumulation in bilberry fruits
    • doi: 10.1104/pp.110.158279
    • Jaakola, L., Poole, M., Jones, M. O., Kamarainen-Karppinen, T., Koskimaki, J. J., Hohtola, A., et al. (2010). A SQUAMOSA MADS box gene is involved in the regulation of anthocyanin accumulation in bilberry fruits. Plant Physiol. 153, 1619-1629. doi: 10.1104/pp.110.158279
    • (2010) Plant Physiol , vol.153 , pp. 1619-1629
    • Jaakola, L.1    Poole, M.2    Jones, M.O.3    Kamarainen-Karppinen, T.4    Koskimaki, J.J.5    Hohtola, A.6
  • 34
  • 35
    • 84900872665 scopus 로고    scopus 로고
    • Joint Genome Institute, Avilable online at
    • Joint Genome Institute. (2010). Phytozome v6.0. Avilable online at: http://www.phytozome.net/
    • (2010) Phytozome V6.0
  • 36
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on a fast Fourier transform
    • doi: 10.1093/nar/gkf436
    • Katoh, K., Misawa, K., Kuma, K., and Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on a fast Fourier transform. Nucleic Acids Res. 30, 3059-3066. doi: 10.1093/nar/gkf436
    • (2002) Nucleic Acids Res , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 37
    • 0028956983 scopus 로고
    • Molecular basis of the cauliflower phenotype in Arabidopsis
    • doi: 10.1126/science.7824951
    • Kempin, S., Savidge, B., and Yanofsky, M. F. (1995). Molecular basis of the cauliflower phenotype in Arabidopsis. Science 27, 522-525. doi: 10.1126/science.7824951
    • (1995) Science , vol.27 , pp. 522-525
    • Kempin, S.1    Savidge, B.2    Yanofsky, M.F.3
  • 38
    • 84863110612 scopus 로고    scopus 로고
    • Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene
    • doi: 10.1105/tpc.112.097105
    • Kobayashi, K., Yasuno, N., Sato, Y., Yoda, M., Yamazaki R., Kimizu, M., et al. (2012). Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell 24, 1848-1859. doi: 10.1105/tpc.112.097105
    • (2012) Plant Cell , vol.24 , pp. 1848-1859
    • Kobayashi, K.1    Yasuno, N.2    Sato, Y.3    Yoda, M.4    Yamazaki, R.5    Kimizu, M.6
  • 39
    • 0032809614 scopus 로고    scopus 로고
    • Patterns of molecular evolution among paralogous floral homeotic genes
    • doi: 10.1093/oxford-journals.molbev.a026193
    • Lawton-Rauh, A. L., Buckler, ES, and Purugganan, M. D. (1999). Patterns of molecular evolution among paralogous floral homeotic genes. Mol. Biol. Evol. 16, 1037-1045. doi: 10.1093/oxford-journals.molbev.a026193
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1037-1045
    • Lawton-Rauh, A.L.1    Buckler, E.S.2    Purugganan, M.D.3
  • 40
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland, MA: Sinauer Associates
    • Li, W.-H. (1997). Molecular Evolution. Sunderland, MA: Sinauer Associates.
    • (1997) Molecular Evolution
    • Li, W.-H.1
  • 41
    • 0242381269 scopus 로고    scopus 로고
    • Duplication and diversification in the APETALA1/FRUITFULL floral homeotic gene lineage: Implications for the evolution of floral development
    • Litt, A., and Irish, V. F. (2003). Duplication and diversification in the APETALA1/FRUITFULL floral homeotic gene lineage: implications for the evolution of floral development. Genetics 165, 821-833.
    • (2003) Genetics , vol.165 , pp. 821-833
    • Litt, A.1    Irish, V.F.2
  • 42
    • 77953751381 scopus 로고    scopus 로고
    • Interactions among proteins of floral MADS-box genes in basal eudicots: Implications for evolution of the regulatory network for flower development
    • doi: 10.1093/molbev/msq044
    • Liu, C., Zhang, J., Zhang, N., Shan, H., Su, K., Zhang, J., et al. (2010). Interactions among proteins of floral MADS-box genes in basal eudicots: implications for evolution of the regulatory network for flower development. Mol. Biol. Evol. 27, 1598-1611. doi: 10.1093/molbev/msq044
    • (2010) Mol. Biol. Evol , vol.27 , pp. 1598-1611
    • Liu, C.1    Zhang, J.2    Zhang, N.3    Shan, H.4    Su, K.5    Zhang, J.6
  • 43
    • 47149102754 scopus 로고    scopus 로고
    • Natural selection of protein structural and functional properties: A single nucleotide polymor-fism perspective
    • doi:10.1186/gb-2008-9-4-r69
    • Liu, J., Zhang, Y., Leu, X., and Zhang, Z. (2008). Natural selection of protein structural and functional properties: a single nucleotide polymor-fism perspective. Genome Biol. 9, R69. doi:10.1186/gb-2008-9-4-r69
    • (2008) Genome Biol , vol.9
    • Liu, J.1    Zhang, Y.2    Leu, X.3    Zhang, Z.4
  • 45
    • 0029411283 scopus 로고
    • The Arabidopsis AGL8 MADS box gene is expressed in inflorescence meristems and is negatively regulated by APETALA1
    • Mandel, M. A., and Yanofsky, M. F. (1995). The Arabidopsis AGL8 MADS box gene is expressed in inflorescence meristems and is negatively regulated by APETALA1. Plant Cell 7, 1763-1771.
    • (1995) Plant Cell , vol.7 , pp. 1763-1771
    • Mandel, M.A.1    Yanofsky, M.F.2
  • 46
    • 56749180608 scopus 로고    scopus 로고
    • Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana
    • doi: 10.1038/ng.253
    • Melzer, S., Lens, F., Gennen, J., Vanneste, S., Rohde, A., and Beeckman, T. (2008). Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana. Nat. Genetics 40, 1489-1492. doi: 10.1038/ng.253
    • (2008) Nat. Genetics , vol.40 , pp. 1489-1492
    • Melzer, S.1    Lens, F.2    Gennen, J.3    Vanneste, S.4    Rohde, A.5    Beeckman, T.6
  • 47
    • 0034710897 scopus 로고    scopus 로고
    • A census of glutamine/asparagine-rich regions: Implications for their conserved function and the prediction of novel prions
    • doi: 10.1073/pnas.97.22.11910
    • Michleitsch, M., and Weissman, J. (2000). A census of glutamine/asparagine-rich regions: implications for their conserved function and the prediction of novel prions. Proc. Natl. Acad. Sci. U.S.A. 97, 11910-11915. doi: 10.1073/pnas.97.22.11910
    • (2000) Proc. Natl. Acad. Sci. U.S.A , vol.97 , pp. 11910-11915
    • Michleitsch, M.1    Weissman, J.2
  • 49
    • 0033180547 scopus 로고    scopus 로고
    • Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid System
    • doi: 10.1104/pp.120.4.1193
    • Moon, Y.-H., Hang, H.-G., Jung, J.-Y., Jeon, J.-S., Sung, S.-K., and An, G. (1999). Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid System. Plant Physiol. 120, 1193-1203. doi: 10.1104/pp.120.4.1193
    • (1999) Plant Physiol , vol.120 , pp. 1193-1203
    • Moon, Y.-H.1    Hang, H.-G.2    Jung, J.-Y.3    Jeon, J.-S.4    Sung, S.-K.5    An, G.6
  • 50
    • 0034766678 scopus 로고    scopus 로고
    • The MADS-box gene DEFH28 from Antirrhinum is involved in the regulation of floral meristem identity and fruit development
    • doi: 10.1046/j.1365-313X. 2001.01139.x
    • Müller, B. M., Saedler, H., and Zachgo, S. (2001). The MADS-box gene DEFH28 from Antirrhinum is involved in the regulation of floral meristem identity and fruit development. Plant J. 28, 169-179. doi: 10.1046/j.1365-313X. 2001.01139.x
    • (2001) Plant J , vol.28 , pp. 169-179
    • Müller, B.M.1    Saedler, H.2    Zachgo, S.3
  • 51
    • 0742270781 scopus 로고    scopus 로고
    • WAP1, a wheat APETALA1 homolog, plays a central role in the phase transition from vegetative to reproductive growth
    • doi: 10.1093/pcp/pcg171
    • Murai, K., Miyamae, M., Kato, H., Takumi, S., and Ogihara, Y. (2003). WAP1, a wheat APETALA1 homolog, plays a central role in the phase transition from vegetative to reproductive growth. Plant Cell Physiol. 44, 1255-1265. doi: 10.1093/pcp/pcg171
    • (2003) Plant Cell Physiol , vol.44 , pp. 1255-1265
    • Murai, K.1    Miyamae, M.2    Kato, H.3    Takumi, S.4    Ogihara, Y.5
  • 52
    • 0034500239 scopus 로고    scopus 로고
    • Polyploid incidence and evolution
    • doi: 10.1146/annurev.genet.34.1.401
    • Otto, S. P., and Whitton, J. (2000). Polyploid incidence and evolution. Annu. Rev. Genet. 34, 401-437. doi: 10.1146/annurev.genet.34.1.401
    • (2000) Annu. Rev. Genet , vol.34 , pp. 401-437
    • Otto, S.P.1    Whitton, J.2
  • 53
    • 84859323553 scopus 로고    scopus 로고
    • Poppy APETALA1/FRUITFULL orthologs control flowering time, branching, perianth identity, and fruit development
    • doi: 10.1104/pp.111. 192104
    • Pabón-Mora, N., Ambrose, B. A., and Litt, A. (2012). Poppy APETALA1/FRUITFULL orthologs control flowering time, branching, perianth identity, and fruit development. Plant Physiol. 158, 1685-1704. doi: 10.1104/pp.111. 192104
    • (2012) Plant Physiol , vol.158 , pp. 1685-1704
    • Pabón-Mora, N.1    Ambrose, B.A.2    Litt, A.3
  • 54
    • 84876290131 scopus 로고    scopus 로고
    • The Aquilegia FRUITFULL-like genes play key roles in leaf morphogenesis and inflorescence development
    • doi: 10.1111/tpj.12113
    • Pabón-Mora, N., Sharma, B., Holappa, L., Kramer, E., and Litt, A. (2013). The Aquilegia FRUITFULL-like genes play key roles in leaf morphogenesis and inflorescence development. Plant J. 74, 197-212. doi: 10.1111/tpj.12113
    • (2013) Plant J , vol.74 , pp. 197-212
    • Pabón-Mora, N.1    Sharma, B.2    Holappa, L.3    Kramer, E.4    Litt, A.5
  • 55
    • 19244384030 scopus 로고    scopus 로고
    • Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: New openings to the MADS world
    • doi: 10.1105/ tpc.011544
    • Parenicová, L., deFolter, S., Kieffer, M., Horner, D. S., Favalli, C., Busscher, J., et al. (2003). Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell 15, 1538-1551. doi: 10.1105/ tpc.011544
    • (2003) Plant Cell , vol.15 , pp. 1538-1551
    • Parenicová, L.1    Defolter, S.2    Kieffer, M.3    Horner, D.S.4    Favalli, C.5    Busscher, J.6
  • 56
    • 0028283985 scopus 로고
    • Glutamine repeats as polar zippers: Their possible role in inherited neurodegen-erative diseases
    • doi: 10.1073/pnas.91.12.5355
    • Perutz, M., Johnson, T., Suzuki, M., and Finch, J. (1994). Glutamine repeats as polar zippers: their possible role in inherited neurodegen-erative diseases. Proc. Natl. Acad. Sci. U.S.A. 91, 5355-5358. doi: 10.1073/pnas.91.12.5355
    • (1994) Proc. Natl. Acad. Sci. U.S.A , vol.91 , pp. 5355-5358
    • Perutz, M.1    Johnson, T.2    Suzuki, M.3    Finch, J.4
  • 57
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • doi: 10.1093/bioinfor-matics/14.9.817
    • Posada, D., and Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818. doi: 10.1093/bioinfor-matics/14.9.817
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 58
    • 33748884876 scopus 로고    scopus 로고
    • Reconstructing the evolutionary history of paralogous APETALA1/FRUITFULL-like genes in grasses (Poaceae)
    • doi: 10.1534/genetics.106. 057125
    • Preston, J. C., and Kellogg, E. A. (2006). Reconstructing the evolutionary history of paralogous APETALA1/FRUITFULL-like genes in grasses (Poaceae). Genetics 174, 421-437. doi: 10.1534/genetics.106. 057125
    • (2006) Genetics , vol.174 , pp. 421-437
    • Preston, J.C.1    Kellogg, E.A.2
  • 59
    • 0032493347 scopus 로고    scopus 로고
    • Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: Nonneutral evolution and naturally occurring variation in floral homeotic function
    • doi: 10.1073/pnas.95. 14.8130
    • Purugganan, M. D., and Suddith, J. I. (1998). Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function. Proc. Natl. Acad. Sci. U.S.A. 96, 8130-8134. doi: 10.1073/pnas.95. 14.8130
    • (1998) Proc. Natl. Acad. Sci. U.S.A , vol.96 , pp. 8130-8134
    • Purugganan, M.D.1    Suddith, J.I.2
  • 60
    • 0031884087 scopus 로고    scopus 로고
    • The activities of acidic and glutamine-rich transcriptional activation domains in plant cells: Design of modular transcription factors for high level expression Plant Mol
    • doi: 10.1023/A:100599032 1918
    • Schwechheimer, C., Smith, C., and Bevan, M. W. (1998). The activities of acidic and glutamine-rich transcriptional activation domains in plant cells: design of modular transcription factors for high level expression Plant Mol. Biol. 36, 195-204. doi: 10.1023/A:100599032 1918
    • (1998) Biol , vol.36 , pp. 195-204
    • Schwechheimer, C.1    Smith, C.2    Bevan, M.W.3
  • 61
    • 34249712966 scopus 로고    scopus 로고
    • Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes
    • doi: 10.1016/j.ympev.2007. 02.016
    • Shan, H., Zhang, N., Liu, C., Xu, G., Zhang, J., Chen, Z., et al. (2007). Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. Mol. Phylogenet. Evol. 44, 26-41. doi: 10.1016/j.ympev.2007. 02.016
    • (2007) Mol. Phylogenet. Evol , vol.44 , pp. 26-41
    • Shan, H.1    Zhang, N.2    Liu, C.3    Xu, G.4    Zhang, J.5    Chen, Z.6
  • 62
    • 79960559240 scopus 로고    scopus 로고
    • Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution
    • doi: 10.1111/j.1469-8137. 2011.03744.x
    • Sharma, B., Guo, C., Kong, H., and Kramer, E. M. (2011). Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution. New Phytol. 191, 870-883. doi: 10.1111/j.1469-8137. 2011.03744.x
    • (2011) New Phytol , vol.191 , pp. 870-883
    • Sharma, B.1    Guo, C.2    Kong, H.3    Kramer, E.M.4
  • 63
    • 84863116642 scopus 로고    scopus 로고
    • Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development
    • doi: 10.1073/pnas.1112871109
    • Smaczniak, C., Immink, R. G. H., Muiño, J. M., Blanvillain, R., Busscher, M., Busscher-Lange, J., et al. (2012). Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development. Proc. Natl. Acad. Sci. U.S.A. 109, 1560-1565. doi: 10.1073/pnas.1112871109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 1560-1565
    • Smaczniak, C.1    Immink, R.G.H.2    Muiño, J.M.3    Blanvillain, R.4    Busscher, M.5    Busscher-Lange, J.6
  • 64
    • 50249100595 scopus 로고    scopus 로고
    • A fast bootstrapping algorithm for the RAxML web-servers
    • doi: 10.1080/106351508 02429642
    • Stamatakis, A., Hoover, P., and Rougemont, J. (2008). A fast bootstrapping algorithm for the RAxML web-servers. Syst. Biol. 57, 758-771. doi: 10.1080/106351508 02429642
    • (2008) Syst. Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 65
    • 84859044328 scopus 로고    scopus 로고
    • Analysis of the Arabidopsis shoot meristem tran-scriptome during floral transition identifies distinct regulatory patterns and a leucine-rich repeat protein that promotes flowering
    • doi: 10.1105/tpc.111.092791
    • Torti, S., Fornara, F., Vincent, C., Andrés, F., Nordström, K., Göbel, U., et al. (2012). Analysis of the Arabidopsis shoot meristem tran-scriptome during floral transition identifies distinct regulatory patterns and a leucine-rich repeat protein that promotes flowering. Plant Cell 24, 444-462. doi: 10.1105/tpc.111.092791
    • (2012) Plant Cell , vol.24 , pp. 444-462
    • Torti, S.1    Fornara, F.2    Vincent, C.3    Andrés, F.4    Nordström, K.5    Göbel, U.6
  • 66
    • 78649668530 scopus 로고    scopus 로고
    • Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction
    • doi:10.1371/journal.pcbi.1001017
    • Van Dijk, A. D. J., Morabito, G., Fiers, M., van Ham, RCHJ., Angenent, G. C., and Immink, R. G. H. (2010). Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction. PLOS Comput. Biol. 6:e1001017. doi:10.1371/journal.pcbi.1001017
    • (2010) PLOS Comput. Biol , vol.6
    • van Dijk, A.D.J.1    Morabito, G.2    Fiers, M.3    van Ham, R.C.H.J.4    Angenent, G.C.5    Immink, R.G.H.6
  • 67
    • 84869018936 scopus 로고    scopus 로고
    • Gamma paleo-hexaploidy in the stem lineage of core eudicots: Significance for MADS-box gene and species diversification
    • doi: 10.1093/molbev/ mss183
    • Vekemans, D., Proost, S., Vanneste, K., Coenen, H., Viaene, T., Ruelens, P., et al. (2012). Gamma paleo-hexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification. Mol. Biol. Evol. 29, 3793-3806. doi: 10.1093/molbev/ mss183
    • (2012) Mol. Biol. Evol , vol.29 , pp. 3793-3806
    • Vekemans, D.1    Proost, S.2    Vanneste, K.3    Coenen, H.4    Viaene, T.5    Ruelens, P.6
  • 68
    • 0037066465 scopus 로고    scopus 로고
    • A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus
    • doi: 10.1126/ science.1068181
    • Vrebalov, J., Ruezinsky, D., Padmanabhan, V., White, R., Medrano, D., Drake, R., et al. (2002). A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus. Science 296, 343-346. doi: 10.1126/ science.1068181
    • (2002) Science , vol.296 , pp. 343-346
    • Vrebalov, J.1    Ruezinsky, D.2    Padmanabhan, V.3    White, R.4    Medrano, D.5    Drake, R.6
  • 69
    • 79951799418 scopus 로고    scopus 로고
    • The pleiotropic structure of the genotype-phenotype map: The evolvability of complex organisms
    • doi: 10.1038/nrg2949
    • Wagner, G. P., and Zhang, J. (2011). The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms. Nat. Rev. Genet. 12, 204-213. doi: 10.1038/nrg2949
    • (2011) Nat. Rev. Genet , vol.12 , pp. 204-213
    • Wagner, G.P.1    Zhang, J.2
  • 70
    • 64449086091 scopus 로고    scopus 로고
    • Phylogeny and classification of Ranunculales: Evidence from four molecular loci and morphological data
    • doi: 10.1016/j.ppees. 2009.01.001
    • Wang, W., Lu, A.-M., Ren, Y., Endress, M. E., and Chen, Z.-D. (2009). Phylogeny and classification of Ranunculales: evidence from four molecular loci and morphological data. Perspect. Plant Ecol. Evol. Syst. 11, 81-110. doi: 10.1016/j.ppees. 2009.01.001
    • (2009) Perspect Plant Ecol. Evol. Syst , vol.11 , pp. 81-110
    • Wang, W.1    Lu, A.-M.2    Ren, Y.3    Endress, M.E.4    Chen, Z.-D.5
  • 71
    • 0033556090 scopus 로고    scopus 로고
    • DNA distortion and multimerization: Novel functions of the glutamine-rich domain of gaga factor
    • doi: 10.1006/jmbi. 1998.2356
    • Wilkins, R., and Lis, J. (1999). DNA distortion and multimerization: novel functions of the glutamine-rich domain of gaga factor. J. Mol. Biol. 285, 515-525. doi: 10.1006/jmbi. 1998.2356
    • (1999) J. Mol. Biol , vol.285 , pp. 515-525
    • Wilkins, R.1    Lis, J.2
  • 72
    • 0032483427 scopus 로고    scopus 로고
    • Glutamine-rich domains activate transcription in yeast saccha-romyces cerevisiae
    • doi: 10.1074/jbc. 273.36.22873
    • Xiao, H., and Jeang, K. (1998). Glutamine-rich domains activate transcription in yeast saccha-romyces cerevisiae. J. Biol. Chem. 273, 22873-22876. doi: 10.1074/jbc. 273.36.22873
    • (1998) J. Biol. Chem , vol.273 , pp. 22873-22876
    • Xiao, H.1    Jeang, K.2
  • 73
    • 0033834826 scopus 로고    scopus 로고
    • Prenylation of the floral transcription factor APETALA1 modulates its function
    • doi: 10.2307/3871127
    • Yalovsky, S., Rodríguez-Concepción, M., Bracha, K., Toledo-Ortiz, G., and Gruissem, W. (2000). Prenylation of the floral transcription factor APETALA1 modulates its function. Plant Cell 12, 1257-1266. doi: 10.2307/3871127
    • (2000) Plant Cell , vol.12 , pp. 1257-1266
    • Yalovsky, S.1    Rodríguez-Concepción, M.2    Bracha, K.3    Toledo-Ortiz, G.4    Gruissem, W.5
  • 74
    • 0037244198 scopus 로고    scopus 로고
    • The K domain mediates heterodimerization of the Arabidopsis floral organ identity porteins, APETALA3 and PISTILLATA
    • doi: 10.1046/j.0960-7412.2003.01473.x
    • Yang, Y. Z., Fanning, L., and Jack, T. (2003). The K domain mediates heterodimerization of the Arabidopsis floral organ identity porteins, APETALA3 and PISTILLATA. Plant J. 33, 47-59. doi: 10.1046/j.0960-7412.2003.01473.x
    • (2003) Plant J , vol.33 , pp. 47-59
    • Yang, Y.Z.1    Fanning, L.2    Jack, T.3
  • 75
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • doi: 10.1093/molbev/ms
    • Yang, Z. (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591. doi: 10.1093/molbev/ms
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.