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Volumn 15, Issue , 2014, Pages

Genome-wide response to selection and genetic basis of cold tolerance in rice (Oryza sativa L.)

Author keywords

Epistasis; Functional genetic units; Hidden genetic diversity; Non random association; Selection

Indexed keywords

ALLELE; ARTICLE; BIOINFORMATICS; COLD STRESS; COLD TOLERANCE; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC ASSOCIATION; GENETIC SELECTION; GENOTYPE; HETEROZYGOTE; HOMOZYGOTE; INTROGRESSION; LEAF TISSUE; LOW TEMPERATURE; NONHUMAN; PHENOTYPE; REGULATOR GENE; RICE; SEEDLING;

EID: 84900791490     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-15-55     Document Type: Article
Times cited : (25)

References (42)
  • 1
    • 33745808677 scopus 로고    scopus 로고
    • Fine mapping of the qCTS12 locus, a major QTL for seedling cold tolerance in rice (Oryza sativa L.)
    • 10.1007/s00122-006-0311-5, 16741739
    • Andaya VC, Tai TH. Fine mapping of the qCTS12 locus, a major QTL for seedling cold tolerance in rice (Oryza sativa L.). Theor Appl Genet 2006, 113:467-475. 10.1007/s00122-006-0311-5, 16741739.
    • (2006) Theor Appl Genet , vol.113 , pp. 467-475
    • Andaya, V.C.1    Tai, T.H.2
  • 2
    • 79953753791 scopus 로고    scopus 로고
    • Bridging the rice yield gap in China
    • Bangkok: FAO Regional Office for Asia and the Pacific, Papademetriou MK, Dent FJ, Herath EM
    • Zhu DF. Bridging the rice yield gap in China. Bridging the rice yield gap in the Aisa-pacific region 2000, 69-83. Bangkok: FAO Regional Office for Asia and the Pacific, Papademetriou MK, Dent FJ, Herath EM.
    • (2000) Bridging the rice yield gap in the Aisa-pacific region , pp. 69-83
    • Zhu, D.F.1
  • 3
    • 0030757610 scopus 로고    scopus 로고
    • Genetic variation for traits related to temperate adaptation of rice cultivars
    • Mackill DJ, Lei XM. Genetic variation for traits related to temperate adaptation of rice cultivars. Crop Sci 1997, 37:1340-1346.
    • (1997) Crop Sci , vol.37 , pp. 1340-1346
    • Mackill, D.J.1    Lei, X.M.2
  • 4
    • 0000954188 scopus 로고
    • Inheritance of cool-temperature seedling vigor in rice and its relationship with other agronomic characters
    • Li CC, Rutger JN. Inheritance of cool-temperature seedling vigor in rice and its relationship with other agronomic characters. Crop Sci 1980, 20:295-298.
    • (1980) Crop Sci , vol.20 , pp. 295-298
    • Li, C.C.1    Rutger, J.N.2
  • 7
    • 0034486859 scopus 로고    scopus 로고
    • QTL analysis of the rice seedling cold tolerance in a double haploid population derived from anther culture of a hybrid between indica and japonica rice
    • Qian Q, Zeng DL, He P, Zheng XW, Chen Y, Zhu LH. QTL analysis of the rice seedling cold tolerance in a double haploid population derived from anther culture of a hybrid between indica and japonica rice. Chin Sci Bull 2000, 45:448-453.
    • (2000) Chin Sci Bull , vol.45 , pp. 448-453
    • Qian, Q.1    Zeng, D.L.2    He, P.3    Zheng, X.W.4    Chen, Y.5    Zhu, L.H.6
  • 8
    • 0034078994 scopus 로고    scopus 로고
    • Mapping of QTLs for low-temperature response in seedlings of rice (Oryza sativa L.)
    • Misawa S, Mori N, Takumi S, Yoshida S, Nakamura C. Mapping of QTLs for low-temperature response in seedlings of rice (Oryza sativa L.). Cereal Res Commun 2000, 28:33-40.
    • (2000) Cereal Res Commun , vol.28 , pp. 33-40
    • Misawa, S.1    Mori, N.2    Takumi, S.3    Yoshida, S.4    Nakamura, C.5
  • 9
    • 0242628015 scopus 로고    scopus 로고
    • Mapping of QTLs associated with cold tolerance during the vegetative stage in rice
    • 10.1093/jxb/erg243, 12966040
    • Andaya VC, Mackill DJ. Mapping of QTLs associated with cold tolerance during the vegetative stage in rice. J Exp Bot 2003, 54:2579-2585. 10.1093/jxb/erg243, 12966040.
    • (2003) J Exp Bot , vol.54 , pp. 2579-2585
    • Andaya, V.C.1    Mackill, D.J.2
  • 11
    • 34247874684 scopus 로고    scopus 로고
    • Identification of quantitative trait loci for cold response of seedling vigor traits in rice
    • 10.1016/S1673-8527(07)60025-3, 17498621
    • Han LZ, Qiao YL, Zhang SY, Zhang YY, Cao GL, Kim J, Lee K, Koh H. Identification of quantitative trait loci for cold response of seedling vigor traits in rice. J Genet Genomics 2007, 34:239-246. 10.1016/S1673-8527(07)60025-3, 17498621.
    • (2007) J Genet Genomics , vol.34 , pp. 239-246
    • Han, L.Z.1    Qiao, Y.L.2    Zhang, S.Y.3    Zhang, Y.Y.4    Cao, G.L.5    Kim, J.6    Lee, K.7    Koh, H.8
  • 12
    • 10344230477 scopus 로고    scopus 로고
    • A major QTL conferring cold tolerance at the early seedling stage using recombinant inbred lines of rice (Oryza sativa L.)
    • Zhang ZH, Su L, Li W, Chen W, Zhu YG. A major QTL conferring cold tolerance at the early seedling stage using recombinant inbred lines of rice (Oryza sativa L.). Plant Sci 2005, 168:527-534.
    • (2005) Plant Sci , vol.168 , pp. 527-534
    • Zhang, Z.H.1    Su, L.2    Li, W.3    Chen, W.4    Zhu, Y.G.5
  • 13
    • 35348869218 scopus 로고    scopus 로고
    • A major QTL associated with cold tolerance at seedling stage in rice (Oryza sativa L.)
    • Lou QJ, Chen L, Sun ZX, Xing YZ, Li J, Xu XY, Mei HW, Luo LJ. A major QTL associated with cold tolerance at seedling stage in rice (Oryza sativa L.). Euphytica 2007, 158:87-94.
    • (2007) Euphytica , vol.158 , pp. 87-94
    • Lou, Q.J.1    Chen, L.2    Sun, Z.X.3    Xing, Y.Z.4    Li, J.5    Xu, X.Y.6    Mei, H.W.7    Luo, L.J.8
  • 14
    • 42949136413 scopus 로고    scopus 로고
    • QTL analysis of cold tolerance at seedling stage in rice (Oryza sativa L.) using recombination inbred lines
    • Jiang L, Xun MM, Wang JK, Wan JM. QTL analysis of cold tolerance at seedling stage in rice (Oryza sativa L.) using recombination inbred lines. J Cereal Sci 2008, 48:173-179.
    • (2008) J Cereal Sci , vol.48 , pp. 173-179
    • Jiang, L.1    Xun, M.M.2    Wang, J.K.3    Wan, J.M.4
  • 16
    • 78650730493 scopus 로고    scopus 로고
    • Identification of QTLs for rice cold tolerance at plumule and 3-leaf-seedling stages by using QTLNetwork software
    • Ji ZJ, Zeng YX, Zeng DL, Ma LY, Li XM, Liu BX, Yang CD. Identification of QTLs for rice cold tolerance at plumule and 3-leaf-seedling stages by using QTLNetwork software. Rice Sci 2010, 17:282-287.
    • (2010) Rice Sci , vol.17 , pp. 282-287
    • Ji, Z.J.1    Zeng, Y.X.2    Zeng, D.L.3    Ma, L.Y.4    Li, X.M.5    Liu, B.X.6    Yang, C.D.7
  • 17
    • 78650781771 scopus 로고    scopus 로고
    • Mapping of QTLs controlling seedling establishment using a direct seedling method in rice
    • Iwata N, Shinada H, Kiuchi H, Sato T, Fujino K. Mapping of QTLs controlling seedling establishment using a direct seedling method in rice. Breeding Sci 2010, 60:353-360.
    • (2010) Breeding Sci , vol.60 , pp. 353-360
    • Iwata, N.1    Shinada, H.2    Kiuchi, H.3    Sato, T.4    Fujino, K.5
  • 18
    • 34848919125 scopus 로고    scopus 로고
    • Fine mapping of the qCTS4 locus associated with seedling cold tolerance in rice (Oryza sativa L.)
    • Andaya VC, Tai TH. Fine mapping of the qCTS4 locus associated with seedling cold tolerance in rice (Oryza sativa L.). Mol Breed 2007, 20:349-358.
    • (2007) Mol Breed , vol.20 , pp. 349-358
    • Andaya, V.C.1    Tai, T.H.2
  • 19
    • 67349257945 scopus 로고    scopus 로고
    • Challenges for effective marker-assisted selection in plants
    • 10.1007/s10709-008-9307-1, 18695989
    • Hospital F. Challenges for effective marker-assisted selection in plants. Genetica 2009, 136:303-310. 10.1007/s10709-008-9307-1, 18695989.
    • (2009) Genetica , vol.136 , pp. 303-310
    • Hospital, F.1
  • 23
    • 84901276142 scopus 로고    scopus 로고
    • Simultaneous improvement of cold tolerance and yield of temperate japonica rice (Oryza sativa L.) by introgression breeding
    • Meng LJ, Lin XY, Wang JM, Chen K, Cui YR, Xu JL, Li ZK. Simultaneous improvement of cold tolerance and yield of temperate japonica rice (Oryza sativa L.) by introgression breeding. Plant Breed 2013, 132:604-612.
    • (2013) Plant Breed , vol.132 , pp. 604-612
    • Meng, L.J.1    Lin, X.Y.2    Wang, J.M.3    Chen, K.4    Cui, Y.R.5    Xu, J.L.6    Li, Z.K.7
  • 24
    • 85010471619 scopus 로고    scopus 로고
    • Selection efficiencies for improving drought/salt tolerances and yield using introgression breeding in rice (Oryza sativa L.)
    • Wang Y, Zhang LB, Nafisah A, Zhu LH, Xu JL, Li ZK. Selection efficiencies for improving drought/salt tolerances and yield using introgression breeding in rice (Oryza sativa L.). The Crop J 2013, 1:134-142.
    • (2013) The Crop J , vol.1 , pp. 134-142
    • Wang, Y.1    Zhang, L.B.2    Nafisah, A.3    Zhu, L.H.4    Xu, J.L.5    Li, Z.K.6
  • 26
    • 79251637003 scopus 로고    scopus 로고
    • Dissecting genetic networks underlying complex phenotypes: the theoretical framework
    • 10.1371/journal.pone.0014541, 3024316, 21283795
    • Zhang F, Zhai HQ, Paterson AH, Xu JL, Gao YM, Zheng TQ, Wu RL, Fu BY, Ali J, Li ZK. Dissecting genetic networks underlying complex phenotypes: the theoretical framework. PLoS One 2011, 6:e14541. 10.1371/journal.pone.0014541, 3024316, 21283795.
    • (2011) PLoS One , vol.6
    • Zhang, F.1    Zhai, H.Q.2    Paterson, A.H.3    Xu, J.L.4    Gao, Y.M.5    Zheng, T.Q.6    Wu, R.L.7    Fu, B.Y.8    Ali, J.9    Li, Z.K.10
  • 27
    • 8744296509 scopus 로고    scopus 로고
    • Cary: SAS Institute Inc, SAS Institute Inc
    • SAS Institute Inc SAS/STAT 9.1 User's Guide 2004, Cary: SAS Institute Inc, SAS Institute Inc.
    • (2004) SAS/STAT 9.1 User's Guide
  • 29
    • 58149247705 scopus 로고    scopus 로고
    • QTL detection with bidirectional and unidirectional selective genotyping: marker-based and trait-based analyses
    • 10.1007/s00122-008-0904-2, 18854970
    • Navabi A, Mather DE, Bernier J, Spaner DM, Atlin GN. QTL detection with bidirectional and unidirectional selective genotyping: marker-based and trait-based analyses. Theor Appl Genet 2009, 118:347-358. 10.1007/s00122-008-0904-2, 18854970.
    • (2009) Theor Appl Genet , vol.118 , pp. 347-358
    • Navabi, A.1    Mather, D.E.2    Bernier, J.3    Spaner, D.M.4    Atlin, G.N.5
  • 30
    • 0015399061 scopus 로고
    • Is the gene the unit of selection? Evidence from two experimental plant populations
    • 10.1073/pnas.69.9.2474, 426968, 4506768
    • Clegg MT, Allard RW, Kahler AL. Is the gene the unit of selection? Evidence from two experimental plant populations. Proc Natl Acad Sci U S A 1972, 69:2474-2478. 10.1073/pnas.69.9.2474, 426968, 4506768.
    • (1972) Proc Natl Acad Sci U S A , vol.69 , pp. 2474-2478
    • Clegg, M.T.1    Allard, R.W.2    Kahler, A.L.3
  • 31
    • 0033836138 scopus 로고    scopus 로고
    • Geographic distribution and multilocus structure of isozyme variation in rice
    • Li ZK, Rutger JN. Geographic distribution and multilocus structure of isozyme variation in rice. Theor Appl Genet 2000, 101:379-387.
    • (2000) Theor Appl Genet , vol.101 , pp. 379-387
    • Li, Z.K.1    Rutger, J.N.2
  • 32
    • 0036273511 scopus 로고    scopus 로고
    • Cell signaling during cold, drought, and salt stress
    • 150558, 11826306
    • Xiong L, Schumaker KS, Zhu JK. Cell signaling during cold, drought, and salt stress. Plant Cell 2002, 14(Suppl 1):165-183. 150558, 11826306.
    • (2002) Plant Cell , vol.14 , Issue.SUPPL.1 , pp. 165-183
    • Xiong, L.1    Schumaker, K.S.2    Zhu, J.K.3
  • 33
    • 70349572797 scopus 로고    scopus 로고
    • Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis
    • 10.5483/BMBRep.2009.42.8.486, 19712584
    • Zhang Y, Chen C, Jin XF, Xiong AS, Peng RH, Hong YH, Yao QH, Chen JM. Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis. BMB Rep 2009, 42:486-492. 10.5483/BMBRep.2009.42.8.486, 19712584.
    • (2009) BMB Rep , vol.42 , pp. 486-492
    • Zhang, Y.1    Chen, C.2    Jin, X.F.3    Xiong, A.S.4    Peng, R.H.5    Hong, Y.H.6    Yao, Q.H.7    Chen, J.M.8
  • 34
    • 0037342492 scopus 로고    scopus 로고
    • Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase
    • 10.1105/tpc.008714, 150027, 12615946
    • Xiong L, Yang Y. Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. Plant Cell 2003, 15:745-759. 10.1105/tpc.008714, 150027, 12615946.
    • (2003) Plant Cell , vol.15 , pp. 745-759
    • Xiong, L.1    Yang, Y.2
  • 35
    • 1942501590 scopus 로고    scopus 로고
    • Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco
    • 10.1073/pnas.0401572101, 395965, 15079051
    • Mukhopadhyay A, Vij S, Tyagi AK. Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco. Proc Natl Acad Sci U S A 2004, 101:6309-6314. 10.1073/pnas.0401572101, 395965, 15079051.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 6309-6314
    • Mukhopadhyay, A.1    Vij, S.2    Tyagi, A.K.3
  • 36
    • 0037297787 scopus 로고    scopus 로고
    • OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression
    • 10.1046/j.1365-313X.2003.01661.x, 12609047
    • Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J 2003, 33:751-763. 10.1046/j.1365-313X.2003.01661.x, 12609047.
    • (2003) Plant J , vol.33 , pp. 751-763
    • Dubouzet, J.G.1    Sakuma, Y.2    Ito, Y.3    Kasuga, M.4    Dubouzet, E.G.5    Miura, S.6    Seki, M.7    Shinozaki, K.8    Yamaguchi-Shinozaki, K.9
  • 37
    • 77955795385 scopus 로고    scopus 로고
    • Cold stress tolerance mechanisms in plants. A review
    • Yadav SK. Cold stress tolerance mechanisms in plants. A review. Agron Sustain Dev 2010, 30:515-527.
    • (2010) Agron Sustain Dev , vol.30 , pp. 515-527
    • Yadav, S.K.1
  • 38
    • 84865827945 scopus 로고    scopus 로고
    • Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background
    • 10.1186/1471-2164-13-461, 3526417, 22953761
    • Zhang F, Huang LY, Wang WS, Zhao XQ, Zhu LH, Fu BY, Li ZK. Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background. BMC Genomics 2012, 13:461. 10.1186/1471-2164-13-461, 3526417, 22953761.
    • (2012) BMC Genomics , vol.13 , pp. 461
    • Zhang, F.1    Huang, L.Y.2    Wang, W.S.3    Zhao, X.Q.4    Zhu, L.H.5    Fu, B.Y.6    Li, Z.K.7
  • 39
    • 3042758677 scopus 로고    scopus 로고
    • 100 generations of selection for oil and protein in corn
    • John Oxford, UK: Wiley & Sons, Janick J
    • Dudley JW, Lambert RJ. 100 generations of selection for oil and protein in corn. Plant breeding reviews: long-term selection: maize 2010, 79-110. John Oxford, UK: Wiley & Sons, Janick J.
    • (2010) Plant breeding reviews: long-term selection: maize , pp. 79-110
    • Dudley, J.W.1    Lambert, R.J.2
  • 40
    • 77957346489 scopus 로고    scopus 로고
    • Genome-wide analysis of a long-term evolution experiment with Drosophila
    • 10.1038/nature09352, 20844486
    • Burke MK, Dunham JP, Shahrestani P, Thomton KR, Rose MR, Long AD. Genome-wide analysis of a long-term evolution experiment with Drosophila. Nature 2010, 467:587-590. 10.1038/nature09352, 20844486.
    • (2010) Nature , vol.467 , pp. 587-590
    • Burke, M.K.1    Dunham, J.P.2    Shahrestani, P.3    Thomton, K.R.4    Rose, M.R.5    Long, A.D.6
  • 41
    • 0030975235 scopus 로고    scopus 로고
    • Genetics of hybrid sterility and hybrid breakdown in an inter-subspecific rice (Oryza sativa L.) population
    • 1207882, 9093864
    • Li ZK, Pinson SRM, Paterson AH, Park WD, Stansel JW. Genetics of hybrid sterility and hybrid breakdown in an inter-subspecific rice (Oryza sativa L.) population. Genetics 1997, 145:1139-1148. 1207882, 9093864.
    • (1997) Genetics , vol.145 , pp. 1139-1148
    • Li, Z.K.1    Pinson, S.R.M.2    Paterson, A.H.3    Park, W.D.4    Stansel, J.W.5
  • 42
    • 84979529172 scopus 로고    scopus 로고
    • Utilization of exotic germplasm
    • New York: Springer Science Business Media, Zhang QF, Wing RA
    • Li ZK, Zheng TQ. Utilization of exotic germplasm. Genetics and genomics of rice: crops and models 2013, 349-361. New York: Springer Science Business Media, Zhang QF, Wing RA.
    • (2013) Genetics and genomics of rice: crops and models , pp. 349-361
    • Li, Z.K.1    Zheng, T.Q.2


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