Phosphokinase antibody arrays on dendron-coated surface

PLoS ONE

Volumn 9, Issue 5, 2014, Pages

  Kwak, Ju Won ^a   Jeong, Hyobin ^a   Han, Sun Ho ^b   Kim, Youngkyu ^a   Son, Sung Min ^b   Mook Jung, Inhee ^b   Hwang, Daehee ^a,c   Park, Joon Won ^a  

^a Pohang University of Science and Technology (POSTECH)   (South Korea)

^b Seoul National University   (South Korea)

^c Daegu Gyeongbuk Institute of Science and Technology   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AGE; ALZHEIMER DISEASE; ANALYTIC METHOD; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BINDING KINETICS; CONTROLLED STUDY; DENDRON COATED PHOSPHOKINASE ANTIBODY ARRAY; MOUSE; NONHUMAN; PROTEIN PHOSPHORYLATION; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SIGNAL TRANSDUCTION; STEREOSPECIFICITY; ANIMAL; ANTIGEN ANTIBODY REACTION; BRAIN; CHEMISTRY; DISEASE MODEL; HUMAN; IMMUNOASSAY; IMMUNOLOGY; MALE; PATHOLOGY; PHOSPHORYLATION; PROCEDURES; TRANSGENIC MOUSE;

ANTHRACENE DERIVATIVE; DENDRIMER; DENDRON; IMMOBILIZED ANTIBODY; PHOSPHOTRANSFERASE;

ALZHEIMER DISEASE; ANIMALS; ANTHRACENES; ANTIBODIES, IMMOBILIZED; ANTIGEN-ANTIBODY REACTIONS; BRAIN; DENDRIMERS; DISEASE MODELS, ANIMAL; HUMANS; IMMUNOASSAY; MALE; MICE; MICE, TRANSGENIC; PHOSPHORYLATION; PHOSPHOTRANSFERASES; SIGNAL TRANSDUCTION;

EID: 84900426234     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0096456     Document Type: Article

References (45)

1. Ficarro SB, McCleland ML, Stukenberg PT, Burke DJ, Ross MM, et al. (2002) Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat Biotechnol 20: 301-305. (Pubitemid 34205425)
2. Cutillas PR, Geering B, Waterfield MD, Vanhaesebroeck B (2005) Quantification of gel-separated proteins and their phosphorylation sites by LC-MS using unlabeled internal standards: analysis of phosphoprotein dynamics in a B cell lymphoma cell line. Mol Cell Proteomics 4: 1038-1051. (Pubitemid 41223364)
3. Zhang H, Pelech S (2012) Using protein microarrays to study phosphorylation-mediated signal transduction. Semin Cell Dev Biol 23: 872-882.
4. Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM (2007) Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc Natl Acad Sci U S A 104: 5860-5865. (Pubitemid 47175624)
5. Angenendt P, Glokler J, Sobek J, Lehrach H, Cahill DJ (2003) Next generation of protein microarray support materials: evaluation for protein and antibody microarray applications. J Chromatogr A 1009: 97-104. (Pubitemid 36969803)
6. Chandra H, Reddy PJ, Srivastava S (2011) Protein microarrays and novel detection platforms. Expert Rev Proteomics 8: 61-79.
7. Chan SM, Ermann J, Su L, Fathman CG, Utz PJ (2004) Protein microarrays for multiplex analysis of signal transduction pathways. Nat Med 10: 1390-1396. (Pubitemid 40022723)
8. Paweletz CP, Charboneau L, Bichsel VE, Simone NL, Chen T, et al. (2001) Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene 20: 1981-1989. (Pubitemid 32458030)
9. Nishizuka S, Charboneau L, Young L, Major S, Reinhold WC, et al. (2003) Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays. Proc Natl Acad Sci U S A 100: 14229-14234. (Pubitemid 37499219)
10. Xiao K, Sun J, Kim J, Rajagopal S, Zhai B, et al. (2010) Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR). Proc Natl Acad Sci U S A 107: 15299-15304.
11. Allaeys I, Marceau F, Poubelle PE (2013) NLRP3 promotes autophagy of urate crystals phagocytized by human osteoblasts. Arthritis Res Ther 15: R176.
12. El-Haibi CP, Singh R, Gupta P, Sharma PK, Greenleaf KN, et al. (2012) Antibody Microarray Analysis of Signaling Networks Regulated by Cxcl13 and Cxcr5 in Prostate Cancer. J Proteomics Bioinform 5: 177-184.
13. Mayya V, Han DK (2009) Phosphoproteomics by mass spectrometry: insights, implications, applications and limitations. Expert Rev Proteomics 6: 605-618.
14. Benters R, Niemeyer CM, Wohrle D (2001) Dendrimer-activated solid supports for nucleic acid and protein microarrays. Chembiochem 2: 686-694. (Pubitemid 33722620)
15. Cretich M, Pirri G, Damin F, Solinas I, Chiari M (2004) A new polymeric coating for protein microarrays. Anal Biochem 332: 67-74. (Pubitemid 39099472)
16. Dai J, Baker GL, Bruening ML (2006) Use of porous membranes modified with polyelectrolyte multilayers as substrates for protein arrays with low nonspecific adsorption. Anal Chem 78: 135-140. (Pubitemid 43050148)
17. Hong BJ, Sunkara V, Park JW (2005) DNA microarrays on nanoscale-controlled surface. Nucleic Acids Res 33: e106.
18. Oh SJ, Ju J, Kim BC, Ko E, Hong BJ, et al. (2005) DNA microarrays on a dendron-modified surface improve significantly the detection of single nucleotide variations in the p53 gene. Nucleic Acids Res 33: e90.
19. Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 40: D109-114.
20. BioCarta website. Available: http://www.biocarta.com. Accessed 2014 Apr 10.
21. Yang YH, Dudoit S, Luu P, Lin DM, Peng V, et al. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30: e15.
22. Chae S, Ahn BY, Byun K, Cho YM, Yu MH, et al. (2013) A systems approach for decoding mitochondrial retrograde signaling pathways. Sci Signal 6: rs4.
23. Marwarha G, Prasanthi JR, Schommer J, Dasari B, Ghribi O (2011) Molecular interplay between leptin, insulin-like growth factor-1, and beta-amyloid in organotypic slices from rabbit hippocampus. Mol Neurodegener 6: 41.
24. Wan J, Fu AK, Ip FC, Ng HK, Hugon J, et al. (2010) Tyk2/STAT3 signaling mediates beta-amyloid-induced neuronal cell death: implications in Alzheimer's disease. J Neurosci 30: 6873-6881.
25. Ho L, Qin W, Pompl PN, Xiang Z, Wang J, et al. (2004) Diet-induced insulin resistance promotes amyloidosis in a transgenic mouse model of Alzheimer's disease. FASEB J 18: 902-904.
26. Ploia C, Antoniou X, Sclip A, Grande V, Cardinetti D, et al. (2011) JNK plays a key role in tau hyperphosphorylation in Alzheimer's disease models. J Alzheimers Dis 26: 315-329.
27. Sze CI, Su M, Pugazhenthi S, Jambal P, Hsu LJ, et al. (2004) Down-regulation of WW domain-containing oxidoreductase induces Tau phosphorylation in vitro. A potential role in Alzheimer's disease. J Biol Chem 279: 30498-30506. (Pubitemid 38937980)
28. Dewachter I, Ris L, Jaworski T, Seymour CM, Kremer A, et al. (2009) GSK3beta, a centre-staged kinase in neuropsychiatric disorders, modulates long term memory by inhibitory phosphorylation at serine-9. Neurobiol Dis 35: 193-200.
29. Wang L, Chiang HC, Wu W, Liang B, Xie Z, et al. (2012) Epidermal growth factor receptor is a preferred target for treating amyloid-beta-induced memory loss. Proc Natl Acad Sci U S A 109: 16743-16748.
30. Mizuno S, Iijima R, Ogishima S, Kikuchi M, Matsuoka Y, et al. (2012) AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. BMC Syst Biol 6: 52.
31. Bader GD, Betel D, Hogue CW (2003) BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res 31: 248-250. (Pubitemid 36150376)
32. Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, et al. (2003) Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res 13: 2363-2371. (Pubitemid 37266003)
33. Chatr-Aryamontri A, Breitkreutz BJ, Heinicke S, Boucher L, Winter A, et al. (2013) The BioGRID interaction database: 2013 update. Nucleic Acids Res 41: D816-823.
34. Fang X, Yu SX, Lu Y, Bast RC Jr, Woodgett JR, et al. (2000) Phosphorylation and inactivation of glycogen synthase kinase 3 by protein kinase A. Proc Natl Acad Sci U S A 97: 11960-11965.
35. Hernandez F, Lucas JJ, Avila J (2013) GSK3 and tau: two convergence points in Alzheimer's disease. J Alzheimers Dis 33 Suppl 1: S141-144.
36. Kim T, Hinton DJ, Choi DS (2011) Protein kinase C-regulated abeta production and clearance. Int J Alzheimers Dis 2011: 857368.
37. Mattson MP, Camandola S (2001) NF-kappaB in neuronal plasticity and neurodegenerative disorders. J Clin Invest 107: 247-254. (Pubitemid 32162153)
38. Kwak J-W CT, Han MH (1998) New monoclonal antibodies against human plasma apolipoprotein A-I and recombinant hybridoma cells for the production of them. Patent
39. Kwak J-W HM, Choi BK (1999) cDNAs encoding murine antibody against human plasma apolipoprotein B-100.
40. Kwak JW, Lee DI, Choi BK, Cho WK, Lee SH, et al. (1996) Cloning and characterization of cDNAs coding for heavy and light chains of a monoclonal antibody (MabA34) specific for human plasma apolipoprotein A-I. Gene 173: 257-259.
41. Kwak JW, Choi BK, Lee DI, Kang YK, Seo YG, et al. (1996) Cloning and characterization of cDNAs coding for heavy and light chains of a monoclonal antibody (MabB23) specific for human plasma apolipoprotein B-100. Gene 169: 237-239.
42. Cahill DJ (2001) Protein and antibody arrays and their medical applications. J Immunol Methods 250: 81-91.
43. Oakley H, Cole SL, Logan S, Maus E, Shao P, et al. (2006) Intraneuronal beta-amyloid aggregates, neurodegeneration, and neuron loss in transgenic mice with five familial Alzheimer's disease mutations: potential factors in amyloid plaque formation. J Neurosci 26: 10129-10140. (Pubitemid 44527407)
44. Son SM, Jung ES, Shin HJ, Byun J, Mook-Jung I (2012) Abeta-induced formation of autophagosomes is mediated by RAGE-CaMKKbeta-AMPK signaling. Neurobiol Aging 33: 1006 e1011-1023.
45. Hornbeck PV, Kornhauser JM, Tkachev S, Zhang B, Skrzypek E, et al. (2012) PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res 40: D261-270.