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Volumn 9, Issue 1, 2014, Pages

Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB

Author keywords

[No Author keywords available]

Indexed keywords

ALUMINUM;

EID: 84900393799     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0087438     Document Type: Article
Times cited : (35)

References (71)
  • 1
    • 0142033542 scopus 로고    scopus 로고
    • Role of the genotype in tolerance to acidity and aluminum toxicity
    • Rengel Z, ed. New York: Marcel Dekker
    • Garvin D, Carver B (2003) Role of the genotype in tolerance to acidity and aluminum toxicity. In Rengel Z, ed. Handbook of Soil Acidity. New York: Marcel Dekker. 387-406.
    • (2003) Handbook of Soil Acidity , pp. 387-406
    • Garvin, D.1    Carver, B.2
  • 2
    • 3242661009 scopus 로고    scopus 로고
    • How do crop plants tolerate acid soils? Mechanisms of aluminum tolerance and phosphorous efficiency
    • DOI 10.1146/annurev.arplant.55.031903.141655
    • Kochian LV, Hoekenga OA, Piñeros MA (2004) How do crop plants tolerate acid soils? Mechanisms of aluminum tolerance and phosphorous efficiency. Annual Review of Plant Biology 55: 459-493. (Pubitemid 38940940)
    • (2004) Annual Review of Plant Biology , vol.55 , pp. 459-493
    • Kochian, L.V.1    Hoekenga, O.A.2    Pineros, M.A.3
  • 3
    • 0029546097 scopus 로고
    • Global extent, development and economic impact of acid soils
    • von Uexküll HR and Mutert E (1995) Global extent, development and economic impact of acid soils. Plant and Soil 171: 1-15.
    • (1995) Plant and Soil , vol.171 , pp. 1-15
    • Von Uexküll, H.R.1    Mutert, E.2
  • 5
    • 0031982131 scopus 로고    scopus 로고
    • Sorghum growth in acid soils of west Africa: Variations in soil chemical properties
    • Doumbia MD, Hossner LR, Onken AB (1998) Sorghum growth in acid soils of West Africa: variations in soil chemical properties. Arid Land Research and Management 12: 179-190. (Pubitemid 28167323)
    • (1998) Arid Soil Research and Rehabilitation , vol.12 , Issue.2 , pp. 179-190
    • Doumbia, M.D.1    Hossner, L.R.2    Onken, A.B.3
  • 10
    • 34248206152 scopus 로고    scopus 로고
    • The roles of organic anion permeases in aluminium resistance and mineral nutrition
    • DOI 10.1016/j.febslet.2007.03.057, PII S0014579307003110, Plant Transporters and Channels
    • Delhaize E, Gruber BD, Ryan PR (2007) The roles of organic anion permeases in aluminium resistance and mineral nutrition. FEBS Letters 581: 2255-2262. (Pubitemid 46726299)
    • (2007) FEBS Letters , vol.581 , Issue.12 , pp. 2255-2262
    • Delhaize, E.1    Gruber, B.D.2    Ryan, P.R.3
  • 14
    • 84864396948 scopus 로고    scopus 로고
    • A promoter-swap strategy between the AtALMT and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance
    • Liu J, Luo X, Shaff J, Liang C, Jia X, et al. (2012) A promoter-swap strategy between the AtALMT and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance. The Plant Journal 71: 327-337.
    • (2012) The Plant Journal , vol.71 , pp. 327-337
    • Liu, J.1    Luo, X.2    Shaff, J.3    Liang, C.4    Jia, X.5
  • 15
    • 4644260751 scopus 로고    scopus 로고
    • Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the Poaceae
    • DOI 10.1534/genetics.103.023580
    • Magalhaes JV, Garvin DF, Wang Y, Sorrells ME, Klein PE, et al. (2004) Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the Poaceae. Genetics 167: 1905-1914. (Pubitemid 39265926)
    • (2004) Genetics , vol.167 , Issue.4 , pp. 1905-1914
    • Magalhaes, J.V.1    Garvin, D.F.2    Wang, Y.3    Sorrells, M.E.4    Klein, P.E.5    Schaffert, R.E.6    Li, L.7    Kochian, L.V.8
  • 17
    • 78149423704 scopus 로고    scopus 로고
    • The multiple origins of aluminium resistance in hexaploid wheat include Aegilops tauschii and more recent cis mutations to TaALMT1
    • Ryan PR, Raman H, Gupta S, Sasaki T, Yamamoto Y, et al. (2010) The multiple origins of aluminium resistance in hexaploid wheat include Aegilops tauschii and more recent cis mutations to TaALMT1. The Plant Journal 64: 446-455.
    • (2010) The Plant Journal , vol.64 , pp. 446-455
    • Ryan, P.R.1    Raman, H.2    Gupta, S.3    Sasaki, T.4    Yamamoto, Y.5
  • 18
    • 84859177998 scopus 로고    scopus 로고
    • Acquisition of aluminium tolerance by modification of a single gene in barley
    • Fujii M, Yokosho K, Yamaji N, Saisho D, Yamane M, et al. (2012) Acquisition of aluminium tolerance by modification of a single gene in barley. Nature Communications 3: 713.
    • (2012) Nature Communications , vol.3 , pp. 713
    • Fujii, M.1    Yokosho, K.2    Yamaji, N.3    Saisho, D.4    Yamane, M.5
  • 19
    • 84873258995 scopus 로고    scopus 로고
    • Transposon-mediated alteration of TaMATE1B expression in wheat confers constitutive citrate efflux from root apices
    • Tovkach A, Ryan PR, Richardson AE, Lewis DC, Rathjen TM, et al. (2013) Transposon-mediated alteration of TaMATE1B expression in wheat confers constitutive citrate efflux from root apices. Plant Physiology 161: 880-892.
    • (2013) Plant Physiology , vol.161 , pp. 880-892
    • Tovkach, A.1    Ryan, P.R.2    Richardson, A.E.3    Lewis, D.C.4    Rathjen, T.M.5
  • 21
    • 58849124631 scopus 로고    scopus 로고
    • Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance
    • Liu J, Magalhaes JV, Shaff J, Kochian LV (2009) Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance. The Plant Journal 57: 389-399.
    • (2009) The Plant Journal , vol.57 , pp. 389-399
    • Liu, J.1    Magalhaes, J.V.2    Shaff, J.3    Kochian, L.V.4
  • 22
    • 72049129125 scopus 로고    scopus 로고
    • A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice
    • Yamaji N, Huang CF, Nagao S, Yano M, Sato Y, et al. (2009) A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice. The Plant Cell 21: 3339-3349.
    • (2009) The Plant Cell , vol.21 , pp. 3339-3349
    • Yamaji, N.1    Huang, C.F.2    Nagao, S.3    Yano, M.4    Sato, Y.5
  • 24
    • 84857640657 scopus 로고    scopus 로고
    • A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice
    • Huang C-F, Yamaji N, Chen Z, Ma JF (2012) A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice. The Plant Journal 69: 857-867.
    • (2012) The Plant Journal , vol.69 , pp. 857-867
    • Huang, C.-F.1    Yamaji, N.2    Chen, Z.3    Ma, J.F.4
  • 25
    • 83555161640 scopus 로고    scopus 로고
    • An Al-inducible MATE gene is involved in external detoxification of Al in rice
    • Yokosho K, Yamaji N, Ma JF (2011) An Al-inducible MATE gene is involved in external detoxification of Al in rice. The Plant Journal 68: 1061-1069.
    • (2011) The Plant Journal , vol.68 , pp. 1061-1069
    • Yokosho, K.1    Yamaji, N.2    Ma, J.F.3
  • 26
    • 84872498928 scopus 로고    scopus 로고
    • Incomplete transfer of accessory loci influencing SbMATE expression underlies genetic background effects for aluminum tolerance in sorghum
    • Melo JO, Lana UGP, Piñeros MA, Alves VMC, Guimarães CT, et al. (2013) Incomplete transfer of accessory loci influencing SbMATE expression underlies genetic background effects for aluminum tolerance in sorghum. The Plant Journal 1: 276-288.
    • (2013) The Plant Journal , vol.1 , pp. 276-288
    • Melo, J.O.1    Lana, U.G.P.2    Piñeros, M.A.3    Alves, V.M.C.4    Guimarães, C.T.5
  • 29
    • 84858126570 scopus 로고    scopus 로고
    • Genetic structure, linkage disequilibrium and signature of selection in sorghum: Lessons from physically anchored DArT markers
    • Bouchet S, Pot D, Deu M, Rami J-F, Billot C, et al. (2012) Genetic structure, linkage disequilibrium and signature of selection in sorghum: lessons from physically anchored DArT markers. PloS One 7: e33470.
    • (2012) PloS One , vol.7
    • Bouchet, S.1    Pot, D.2    Deu, M.3    Rami, J.-F.4    Billot, C.5
  • 30
    • 79958774138 scopus 로고    scopus 로고
    • The relationship between population structure and aluminum tolerance in cultivated sorghum
    • Caniato FF, Guimarães CT, Hamblin M, Billot C, Rami J-F, et al. (2011) The relationship between population structure and aluminum tolerance in cultivated sorghum. PloS One 6: e20830.
    • (2011) PloS One , vol.6
    • Caniato, F.F.1    Guimarães, C.T.2    Hamblin, M.3    Billot, C.4    Rami, J.-F.5
  • 31
    • 0023430504 scopus 로고
    • Gametic disequilibrium measures: Proceed with caution
    • Hedrick PW (1987) Gametic disequilibrium measures: proceed with caution. Genetics 117: 331-341.
    • (1987) Genetics , vol.117 , pp. 331-341
    • Hedrick, P.W.1
  • 32
    • 0031969999 scopus 로고    scopus 로고
    • To tree or not to tree
    • Smouse PE (1998) To tree or not to tree. Molecular Ecology 7: 399-412.
    • (1998) Molecular Ecology , vol.7 , pp. 399-412
    • Smouse, P.E.1
  • 33
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: Trees grafting into networks
    • DOI 10.1016/S0169-5347(00)02026-7, PII S0169534700020267
    • Posada D, Crandall K (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution 16: 37-45. (Pubitemid 32102347)
    • (2001) Trends in Ecology and Evolution , vol.16 , Issue.1 , pp. 37-45
    • Posada, D.1    Crandall, K.A.2
  • 36
    • 0000031669 scopus 로고
    • Systematics and evolution of sorghum sect. Sorghum (Gramineae)
    • de Wet JMJ (1978) Systematics and evolution of sorghum sect. Sorghum (Gramineae). American Journal of Botany 65: 477-484.
    • (1978) American Journal of Botany , vol.65 , pp. 477-484
    • De Wet, J.M.J.1
  • 37
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DOI 10.1093/molbev/msj030
    • Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-267. (Pubitemid 43100040)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 38
    • 32544443264 scopus 로고    scopus 로고
    • Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor
    • DOI 10.1534/genetics.105.041566
    • Hamblin MT, Fernandez MGS, Casa AM, Mitchell SE, Paterson AH, et al. (2005) Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor. Genetics 171: 1247-1256. (Pubitemid 43234856)
    • (2005) Genetics , vol.171 , Issue.3 , pp. 1247-1256
    • Hamblin, M.T.1    Salas, F.M.G.2    Casa, A.M.3    Mitchell, S.E.4    Paterson, A.H.5    Kresovich, S.6
  • 41
    • 33744980661 scopus 로고    scopus 로고
    • Genetic association mapping and genome organization of maize
    • DOI 10.1016/j.copbio.2006.02.003, PII S0958166906000280
    • Yu J, Buckler E (2006) Genetic association mapping and genome organization of maize. Current Opinion in Biotechnology 17: 155-160. (Pubitemid 46137854)
    • (2006) Current Opinion in Biotechnology , vol.17 , Issue.2 , pp. 155-160
    • Yu, J.1    Buckler, E.S.2
  • 42
    • 77949517584 scopus 로고    scopus 로고
    • Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers
    • Yan J, Shah T, Warburton ML, Buckler ES, McMullen MD, et al. (2009) Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PloS One 4: e8451.
    • (2009) PloS One , vol.4
    • Yan, J.1    Shah, T.2    Warburton, M.L.3    Buckler, E.S.4    McMullen, M.D.5
  • 43
    • 0036468808 scopus 로고    scopus 로고
    • Linkage disequilibrium: What history has to tell us
    • DOI 10.1016/S0168-9525(02)02557-X, PII S0168952501025574
    • Nordborg M, Tavare S (2002) Linkage disequilibrium: what history has to tell us. Trends in Genetics 18: 83-90. (Pubitemid 34127807)
    • (2002) Trends in Genetics , vol.18 , Issue.2 , pp. 83-90
    • Nordborg, M.1    Tavare, S.2
  • 44
    • 84861640412 scopus 로고    scopus 로고
    • Parallel domestication of the Shattering1 genes in cereals
    • Lin Z, Li X, Shannon LM, Yeh C-T, Wang ML, et al. (2012) Parallel domestication of the Shattering1 genes in cereals. Nature Genetics 44: 720-724.
    • (2012) Nature Genetics , vol.44 , pp. 720-724
    • Lin, Z.1    Li, X.2    Shannon, L.M.3    Yeh, C.-T.4    Wang, M.L.5
  • 46
    • 68449094455 scopus 로고    scopus 로고
    • Genetic properties of the maize nested association mapping population
    • McMullen MD, Kresovich S, Villeda HS, Bradbury P, Li H, et al. (2009) Genetic properties of the maize nested association mapping population. Science 325: 737-740.
    • (2009) Science , vol.325 , pp. 737-740
    • McMullen, M.D.1    Kresovich, S.2    Villeda, H.S.3    Bradbury, P.4    Li, H.5
  • 47
    • 84874780997 scopus 로고    scopus 로고
    • Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping
    • Larsson SJ, Lipka AE, Buckler ES (2013) Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping. PLoS Genetics 9: e1003246.
    • (2013) PLoS Genetics , vol.9
    • Larsson, S.J.1    Lipka, A.E.2    Buckler, E.S.3
  • 48
    • 80052334114 scopus 로고    scopus 로고
    • Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping
    • Famoso AN, Zhao K, Clark RT, Tung C-W, Wright MH, et al. (2011) Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genetics 7: e1002221.
    • (2011) PLoS Genetics , vol.7
    • Famoso, A.N.1    Zhao, K.2    Clark, R.T.3    Tung, C.-W.4    Wright, M.H.5
  • 49
    • 78649581906 scopus 로고    scopus 로고
    • Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley
    • Lorenz AJ, Hamblin MT, Jannink J-L (2010) Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley. PloS One 5: e14079.
    • (2010) PloS One , vol.5
    • Lorenz, A.J.1    Hamblin, M.T.2    Jannink, J.-L.3
  • 50
    • 84900398409 scopus 로고    scopus 로고
    • Factors affecting the power of haplotype markers in association studies
    • Hamblin MT, Jannink J-L (2011) Factors affecting the power of haplotype markers in association studies. The Plant Genome 4: 145-153.
    • (2011) The Plant Genome , vol.4 , pp. 145-153
    • Hamblin, M.T.1    Jannink, J.-L.2
  • 51
    • 80053388300 scopus 로고    scopus 로고
    • Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
    • Zhao K, Tung C-W, Eizenga GC, Wright MH, Ali ML, et al. (2011) Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nature communications 2: 467.
    • (2011) Nature Communications , vol.2 , pp. 467
    • Zhao, K.1    Tung, C.-W.2    Eizenga, G.C.3    Wright, M.H.4    Ali, M.L.5
  • 52
    • 33646409268 scopus 로고    scopus 로고
    • A global view of genetic diversity in cultivated sorghums using a core collection
    • Deu M, Rattunde F, Chantereau J (2006) A global view of genetic diversity in cultivated sorghums using a core collection. Genome 49: 168-180.
    • (2006) Genome , vol.49 , pp. 168-180
    • Deu, M.1    Rattunde, F.2    Chantereau, J.3
  • 53
    • 84875637568 scopus 로고    scopus 로고
    • Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources
    • Billot C, Ramu P, Bouchet S, Chantereau J, Deu M, et al. (2013) Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources. PloS One 8: e59714.
    • (2013) PloS One , vol.8
    • Billot, C.1    Ramu, P.2    Bouchet, S.3    Chantereau, J.4    Deu, M.5
  • 54
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz B (1978) Estimating the dimension of a model. Annals of Statistics 6: 461-464.
    • (1978) Annals of Statistics , vol.6 , pp. 461-464
    • Schwarz, B.1
  • 56
    • 0001641283 scopus 로고
    • A simplified classification of cultivated sorghum
    • Harlan JR, de Wet JMJ (1972). A simplified classification of cultivated sorghum. Crop Science 12: 172-176.
    • (1972) Crop Science , vol.12 , pp. 172-176
    • Harlan, J.R.1    De Wet, J.M.J.2
  • 57
    • 0034143589 scopus 로고    scopus 로고
    • Intron-mediated enhancement of gene expression independent of unique intron sequences and splicing
    • Rose AB, Beliakoff JA (2000) Intron-mediated enhancement of gene expression independent of unique intron sequences and splicing. Plant Physiology 122: 535-542. (Pubitemid 30153121)
    • (2000) Plant Physiology , vol.122 , Issue.2 , pp. 535-542
    • Rose, A.B.1    Beliakoff, J.A.2
  • 58
    • 0037406116 scopus 로고    scopus 로고
    • A quantitative analysis of intron effects on mammalian gene expression
    • DOI 10.1261/rna.5250403
    • Nott A, Meislin SH, Moore MJ (2003) A quantitative analysis of intron effects on mammalian gene expression. RNA 9: 607-617. (Pubitemid 36505458)
    • (2003) RNA , vol.9 , Issue.5 , pp. 607-617
    • Nott, A.1    Meislin, S.H.2    Moore, M.J.3
  • 60
    • 85102915670 scopus 로고
    • GEOCHEM-PC: A chemical speciation program for IBM and compatible computers
    • Loeppert RH, Schwab AP, Goldberg S, editors. Madison: Soil Science Society of America
    • Parker DR, Norvell WA, Chaney RL (1995). GEOCHEM-PC: a chemical speciation program for IBM and compatible computers. In: Loeppert RH, Schwab AP, Goldberg S, editors. Chemical Equilibrium and Reaction Models. Madison: Soil Science Society of America. 253-269.
    • (1995) Chemical Equilibrium and Reaction Models , pp. 253-269
    • Parker, D.R.1    Norvell, W.A.2    Chaney, R.L.3
  • 61
  • 63
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 64
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587. (Pubitemid 37102217)
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 65
    • 0002907949 scopus 로고
    • The interaction of selection and linkage. I. General considerations; heterotic models
    • Lewontin RC (1964) The interaction of selection and linkage. I. General considerations; heterotic models. Genetics 49: 49-67.
    • (1964) Genetics , vol.49 , pp. 49-67
    • Lewontin, R.C.1
  • 67
    • 0015070635 scopus 로고
    • Linkage disequilibrium of chromosome segments
    • Sved JA (1971) Linkage disequilibrium of chromosome segments. Theoretical Population Biology 2: 125-141.
    • (1971) Theoretical Population Biology , vol.2 , pp. 125-141
    • Sved, J.A.1
  • 69
    • 0028157336 scopus 로고
    • Estimation of genetic distance and coefficient of gene diversity from single-probe multilocus DNA fingerprinting data
    • Jin L, Chakraborty R (1994) Estimation of genetic distance and coefficient of gene diversity from single-probe multilocus DNA fingerprinting data. Molecular Biology and Evolution 11: 120-127. (Pubitemid 24034129)
    • (1994) Molecular Biology and Evolution , vol.11 , Issue.1 , pp. 120-127
    • Jin, L.1    Chakraborty, R.2
  • 70
    • 18744382780 scopus 로고    scopus 로고
    • PowerMaker: An integrated analysis environment for genetic maker analysis
    • DOI 10.1093/bioinformatics/bti282
    • Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129. (Pubitemid 40668066)
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2128-2129
    • Liu, K.1    Muse, S.V.2
  • 71
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson RR, Kaplan NL (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164. (Pubitemid 16248827)
    • (1985) Genetics , vol.111 , Issue.1 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2


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